+D GENES KO
#
KEGG Orthology (KO) - Acetivibrio clariflavus
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:ccl00010]
D Clocl_3057 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D Clocl_3860 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Clocl_1322 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Clocl_2229 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Clocl_3109 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Clocl_1150 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Clocl_3108 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Clocl_1154 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Clocl_1152 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Clocl_1153 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Clocl_1155 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Clocl_4004 putative phosphoglycerate mutase, AP superfamily K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Clocl_2260 proposed homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Clocl_1193 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Clocl_1090 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Clocl_2755 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Clocl_0927 phosphoenolpyruvate synthase/pyruvate phosphate dikinase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Clocl_2720 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Clocl_2719 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Clocl_2722 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Clocl_2721 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Clocl_0023 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Clocl_0756 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Clocl_0628 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Clocl_1343 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Clocl_1344 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Clocl_3325 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Clocl_1449 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Clocl_0117 alcohol dehydrogenase, class IV K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Clocl_3758 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Clocl_2592 acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Clocl_2158 haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D Clocl_2234 phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Clocl_0992 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
C 00020 Citrate cycle (TCA cycle) [PATH:ccl00020]
D Clocl_3833 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Clocl_3344 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Clocl_3832 aconitate hydratase, putative, Aquifex type K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Clocl_1077 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Clocl_1343 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Clocl_1344 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Clocl_1345 2-oxoacid:ferredoxin oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D Clocl_1342 hypothetical protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D Clocl_3292 hydro-lyase, Fe-S type, tartrate/fumarate subfamily K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Clocl_3291 hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Clocl_0992 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D Clocl_2720 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Clocl_2719 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Clocl_2722 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Clocl_2721 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Clocl_0023 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Clocl_0756 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Clocl_0628 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:ccl00030]
D Clocl_1322 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Clocl_2564 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Clocl_0414 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Clocl_0415 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Clocl_1012 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Clocl_1013 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Clocl_1257 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Clocl_1258 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Clocl_0289 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Clocl_0610 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D Clocl_0788 sugar kinase, ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D Clocl_1468 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D Clocl_2234 phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Clocl_0323 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Clocl_3108 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Clocl_2229 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Clocl_3109 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Clocl_1150 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:ccl00040]
D Clocl_3004 glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D Clocl_0929 mannitol-1-phosphate/altronate dehydrogenase K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D Clocl_1015 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Clocl_2817 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Clocl_4130 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Clocl_2439 ribulose-5-phosphate 4-epimerase-like epimerase or aldolase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D Clocl_2564 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Clocl_2224 hypothetical protein K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15]
C 00051 Fructose and mannose metabolism [PATH:ccl00051]
D Clocl_1564 PDK repeat-containing protein K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Clocl_1824 beta-mannanase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Clocl_0901 beta-mannanase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Clocl_1827 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Clocl_1331 phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Clocl_0585 Nucleoside-diphosphate-sugar pyrophosphorylase family protein K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8]
D Clocl_1424 Nucleoside-diphosphate-sugar pyrophosphorylase family protein K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8]
D Clocl_1328 Nucleoside-diphosphate-sugar pyrophosphorylase family protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Clocl_2229 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Clocl_3109 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Clocl_1150 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Clocl_0594 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D Clocl_3108 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Clocl_1154 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Clocl_3957 nucleoside-diphosphate-sugar epimerase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D Clocl_0289 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:ccl00052]
D Clocl_1229 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Clocl_4077 nucleoside-diphosphate-sugar epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Clocl_4130 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Clocl_2234 phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Clocl_3057 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D Clocl_3860 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Clocl_2639 family 4 glycosyl hydrolase, alpha-galactosidase/6-phospho-beta-glucosidase K07406 melA; alpha-galactosidase [EC:3.2.1.22]
D Clocl_1580 phosphotransferase system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
D Clocl_2229 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Clocl_3109 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Clocl_1150 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00053 Ascorbate and aldarate metabolism [PATH:ccl00053]
D Clocl_1015 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Clocl_2817 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Clocl_2439 ribulose-5-phosphate 4-epimerase-like epimerase or aldolase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D Clocl_3758 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:ccl00500]
D Clocl_4130 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Clocl_2223 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Clocl_2040 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Clocl_3244 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Clocl_3253 thioredoxin domain protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1981 endoglucanase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1806 dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_3001 Cellulose binding domain-containing protein,dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_3038 Cellulose binding domain-containing protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_3255 dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1566 Cellulose binding domain-containing protein,dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1567 thioredoxin domain protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1975 dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_2225 thioredoxin domain protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_3029 dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_3917 putative carbohydrate binding protein,dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_0350 endoglucanase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_3932 endoglucanase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1056 Cellulose binding domain-containing protein,dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1122 endoglucanase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1864 Cellulose binding domain-containing protein,dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_0464 cellobiose phosphorylase K00702 E2.4.1.20; cellobiose phosphorylase [EC:2.4.1.20]
D Clocl_0465 cellobiose phosphorylase K00702 E2.4.1.20; cellobiose phosphorylase [EC:2.4.1.20]
D Clocl_2870 glucose-1-phosphate adenylyltransferase, GlgD subunit K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Clocl_2871 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Clocl_2252 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D Clocl_1073 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D Clocl_3394 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Clocl_3100 alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D Clocl_2020 glycosidase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D Clocl_0563 glycosyl hydrolase, glucoamylase K01178 SGA1; glucoamylase [EC:3.2.1.3]
D Clocl_2234 phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Clocl_3057 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D Clocl_3860 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Clocl_1322 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Clocl_1827 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ccl00520]
D Clocl_3239 chitinase K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D Clocl_2920 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D Clocl_1827 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Clocl_2979 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Clocl_2980 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D Clocl_0322 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Clocl_2922 hypothetical protein K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Clocl_0307 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Clocl_4170 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Clocl_1133 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Clocl_0293 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Clocl_1020 putative nucleoside-diphosphate sugar epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D Clocl_4079 pseudaminic acid biosynthesis-associated protein PseG K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57]
D Clocl_4082 N-acetylneuraminate synthase K15898 pseI; pseudaminic acid synthase [EC:2.5.1.97]
D Clocl_4179 UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing K18429 legG; GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolysing) [EC:3.2.1.184]
D Clocl_4180 N-acetylneuraminate synthase K18430 legI; N,N'-diacetyllegionaminate synthase [EC:2.5.1.101]
D Clocl_4178 CMP-N-acetylneuraminic acid synthetase K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82]
D Clocl_2445 alpha-L-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D Clocl_2437 beta-xylosidase K15921 xynD; arabinoxylan arabinofuranohydrolase [EC:3.2.1.55]
D Clocl_2443 beta-xylosidase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D Clocl_3057 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D Clocl_3860 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Clocl_2234 phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Clocl_4130 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Clocl_1015 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Clocl_2817 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Clocl_1229 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Clocl_4077 nucleoside-diphosphate-sugar epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Clocl_1322 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Clocl_1331 phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Clocl_0585 Nucleoside-diphosphate-sugar pyrophosphorylase family protein K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8]
D Clocl_1424 Nucleoside-diphosphate-sugar pyrophosphorylase family protein K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8]
D Clocl_1328 Nucleoside-diphosphate-sugar pyrophosphorylase family protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Clocl_3957 nucleoside-diphosphate-sugar epimerase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D Clocl_1021 putative PLP-dependent enzyme possibly involved in cell wall biogenesis K13010 per; perosamine synthetase [EC:2.6.1.102]
D Clocl_1022 putative PLP-dependent enzyme possibly involved in cell wall biogenesis K13010 per; perosamine synthetase [EC:2.6.1.102]
D Clocl_2870 glucose-1-phosphate adenylyltransferase, GlgD subunit K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Clocl_2871 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:ccl00620]
D Clocl_2592 acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Clocl_2720 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Clocl_2719 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Clocl_2722 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Clocl_2721 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Clocl_0023 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Clocl_0756 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Clocl_0628 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Clocl_1343 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Clocl_1344 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Clocl_0907 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Clocl_1930 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Clocl_3110 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Clocl_0117 alcohol dehydrogenase, class IV K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Clocl_2523 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Clocl_2524 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Clocl_1090 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Clocl_3758 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Clocl_3325 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Clocl_1449 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Clocl_0236 lactoylglutathione lyase-like lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Clocl_0151 lactoylglutathione lyase-like lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Clocl_3682 Zn-dependent hydrolase, glyoxylase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Clocl_2782 Zn-dependent hydrolase, glyoxylase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Clocl_1669 Zn-dependent hydrolase, glyoxylase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Clocl_3760 Zn-dependent hydrolase, glyoxylase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Clocl_3326 malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D Clocl_1499 pyruvate/oxaloacetate carboxyltransferase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D Clocl_1926 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Clocl_3292 hydro-lyase, Fe-S type, tartrate/fumarate subfamily K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Clocl_3291 hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Clocl_0992 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D Clocl_2755 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Clocl_0927 phosphoenolpyruvate synthase/pyruvate phosphate dikinase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Clocl_4140 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Clocl_4141 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Clocl_1269 isopropylmalate/homocitrate/citramalate synthase K02594 nifV; homocitrate synthase NifV [EC:2.3.3.14]
D Clocl_1270 isopropylmalate/homocitrate/citramalate synthase K02594 nifV; homocitrate synthase NifV [EC:2.3.3.14]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ccl00630]
D Clocl_2592 acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Clocl_3833 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Clocl_3344 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Clocl_3832 aconitate hydratase, putative, Aquifex type K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Clocl_0367 haloacid dehalogenase superfamily enzyme, subfamily IA K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Clocl_0953 haloacid dehalogenase superfamily enzyme, subfamily IA K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Clocl_3945 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Clocl_1346 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Clocl_2938 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Clocl_1445 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Clocl_3357 hydrogenase, Fe-only K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Clocl_0620 putative metal-dependent hydrolase K07130 kynB; arylformamidase [EC:3.5.1.9]
C 00640 Propanoate metabolism [PATH:ccl00640]
D Clocl_2592 acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Clocl_2523 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Clocl_2524 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Clocl_2720 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Clocl_2719 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Clocl_2722 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Clocl_2721 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Clocl_0907 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Clocl_1930 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Clocl_3110 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Clocl_3325 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Clocl_1449 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Clocl_1119 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
C 00650 Butanoate metabolism [PATH:ccl00650]
D Clocl_1655 putative paraquat-inducible protein B K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D Clocl_0117 alcohol dehydrogenase, class IV K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Clocl_1926 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Clocl_1498 biotin carboxyl carrier protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D Clocl_2258 hypothetical protein K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
D Clocl_0907 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Clocl_1930 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Clocl_3110 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Clocl_2720 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Clocl_2719 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Clocl_2722 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Clocl_2721 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Clocl_0023 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Clocl_0756 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Clocl_0628 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Clocl_1343 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Clocl_1344 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Clocl_4144 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Clocl_4066 thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Clocl_0647 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Clocl_4143 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:ccl00660]
D Clocl_4144 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Clocl_4066 thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Clocl_0647 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Clocl_4143 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Clocl_2902 homoaconitate hydratase family protein/3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Clocl_2901 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Clocl_4061 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:ccl00562]
D Clocl_2848 Zinc dependent phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D Clocl_1154 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:ccl00190]
D Clocl_0299 ATP synthase F1 subcomplex alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Clocl_0301 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Clocl_0300 ATP synthase, F1 gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Clocl_0298 ATP synthase F1 subcomplex delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Clocl_0302 ATP synthase, F1 epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Clocl_0295 F0F1-type ATP synthase, alpha subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Clocl_0297 ATP synthase F0 subcomplex B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Clocl_0296 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Clocl_0109 ATP synthase, A subunit K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D Clocl_0108 archaeal/vacuolar-type H+-ATPase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D Clocl_0111 archaeal/vacuolar-type H+-ATPase subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D Clocl_0107 H(+)-transporting ATP synthase, vacuolar type, subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D Clocl_0112 archaeal/vacuolar-type H+-ATPase subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D Clocl_0110 archaeal/vacuolar-type H+-ATPase subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D Clocl_0115 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D Clocl_0114 archaeal/vacuolar-type H+-ATPase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D Clocl_0113 ATP synthase subunit C K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D Clocl_4051 inorganic pyrophosphatase/exopolyphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:ccl00680]
D Clocl_3357 hydrogenase, Fe-only K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Clocl_0806 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Clocl_0520 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Clocl_2938 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Clocl_1445 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Clocl_1193 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Clocl_3108 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Clocl_2229 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Clocl_3109 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Clocl_1150 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Clocl_2523 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Clocl_2524 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Clocl_2592 acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Clocl_2720 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Clocl_2719 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Clocl_2722 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Clocl_2721 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Clocl_0927 phosphoenolpyruvate synthase/pyruvate phosphate dikinase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Clocl_1155 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Clocl_4004 putative phosphoglycerate mutase, AP superfamily K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Clocl_2260 proposed homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Clocl_3331 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Clocl_3224 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Clocl_1853 fructose-2,6-bisphosphatase K22305 psp; phosphoserine phosphatase [EC:3.1.3.3]
D Clocl_0783 methanol:corrinoid methyltransferase K04480 mtaB; methanol---5-hydroxybenzimidazolylcobamide Co-methyltransferase [EC:2.1.1.90]
D Clocl_2711 putative cobalamin binding protein K16179 mtbC; dimethylamine corrinoid protein
D Clocl_2304 putative cobalamin binding protein K16179 mtbC; dimethylamine corrinoid protein
C 00910 Nitrogen metabolism [PATH:ccl00910]
D Clocl_3420 sulfite reductase, beta subunit (hemoprotein) K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
D Clocl_1264 Mo-nitrogenase MoFe protein subunit NifD precursor K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
D Clocl_1281 nitrogenase molybdenum-iron protein, alpha and beta chains K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
D Clocl_2139 nitrogenase molybdenum-iron protein, alpha and beta chains K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
D Clocl_3788 nitrogenase molybdenum-iron protein, alpha and beta chains K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
D Clocl_2301 nitrogenase molybdenum-iron protein, alpha and beta chains K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
D Clocl_1280 nitrogenase molybdenum-iron protein, alpha and beta chains K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D Clocl_3789 nitrogenase molybdenum-iron protein, alpha and beta chains K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D Clocl_1265 Mo-nitrogenase MoFe protein subunit NifK K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D Clocl_2302 nitrogenase molybdenum-iron protein, alpha and beta chains K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D Clocl_2138 nitrogenase molybdenum-iron protein, alpha and beta chains K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D Clocl_1261 Mo-nitrogenase iron protein subunit NifH K02588 nifH; nitrogenase iron protein NifH
D Clocl_2292 nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D Clocl_2140 Mo-nitrogenase iron protein subunit NifH K02588 nifH; nitrogenase iron protein NifH
D Clocl_0917 hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D Clocl_0082 glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Clocl_3945 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Clocl_1346 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Clocl_0016 glutamate synthase family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Clocl_0015 NADH/NADPH-dependent glutamate synthase small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Clocl_0079 NADPH-dependent glutamate synthase, homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
C 00920 Sulfur metabolism [PATH:ccl00920]
D Clocl_0513 sulfate/thiosulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Clocl_0514 sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Clocl_0515 sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D Clocl_0516 sulfate ABC transporter, ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Clocl_3417 sulfate adenylyltransferase subunit 1, adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D Clocl_3418 PAPS reductase/FAD synthetase family protein K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Clocl_2451 exopolyphosphatase-like enzyme K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D Clocl_3419 thioredoxin-dependent phosophoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D Clocl_3981 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Clocl_2202 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Clocl_2305 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Clocl_2206 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D Clocl_3421 cystathionine beta-lyase/cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:ccl00061]
D Clocl_1860 acyl carrier protein K02078 acpP; acyl carrier protein
D Clocl_4084 acyl carrier protein K02078 acpP; acyl carrier protein
D Clocl_2377 acyl carrier protein K02078 acpP; acyl carrier protein
D Clocl_2664 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Clocl_2379 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Clocl_1859 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Clocl_1861 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Clocl_2380 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Clocl_2376 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Clocl_1010 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Clocl_1027 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Clocl_2378 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Clocl_0318 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Clocl_1655 putative paraquat-inducible protein B K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D Clocl_3390 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_3396 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_3969 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_1858 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_1719 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:ccl00071]
D Clocl_3390 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_3396 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_3969 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_1858 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_1719 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_0117 alcohol dehydrogenase, class IV K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Clocl_3758 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:ccl00561]
D Clocl_3758 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Clocl_2381 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Clocl_2518 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Clocl_1846 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Clocl_0053 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D Clocl_1218 phosphoglycerol transferase family protein, alkaline phosphatase superfamily K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D Clocl_1081 phosphoglycerol transferase family protein, alkaline phosphatase superfamily K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D Clocl_2639 family 4 glycosyl hydrolase, alpha-galactosidase/6-phospho-beta-glucosidase K07406 melA; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:ccl00564]
D Clocl_2517 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D Clocl_3405 putative dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D Clocl_2518 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Clocl_1846 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Clocl_2848 Zinc dependent phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D Clocl_2100 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Clocl_2461 CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D Clocl_2383 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D Clocl_2218 phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D Clocl_2227 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
D Clocl_0519 glycerol dehydrogenase-like oxidoreductase K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261]
C 00565 Ether lipid metabolism
D Clocl_2848 Zinc dependent phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
C 00600 Sphingolipid metabolism [PATH:ccl00600]
D Clocl_2639 family 4 glycosyl hydrolase, alpha-galactosidase/6-phospho-beta-glucosidase K07406 melA; alpha-galactosidase [EC:3.2.1.22]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:ccl00230]
D Clocl_2716 NTP pyrophosphohydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Clocl_1465 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Clocl_1468 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D Clocl_2234 phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Clocl_0323 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Clocl_3070 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Clocl_3346 glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Clocl_3066 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D Clocl_3068 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Clocl_2589 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D Clocl_1175 hypothetical protein K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D Clocl_3069 phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D Clocl_3071 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D Clocl_3926 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D Clocl_1803 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Clocl_3067 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Clocl_2785 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Clocl_2480 sugar kinase, ribokinase K22026 K22026; nucleoside kinase [EC:2.7.1.73 2.7.1.213 2.7.1.-]
D Clocl_3012 purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Clocl_1727 purine-nucleoside phosphorylase, DeoD family K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Clocl_2149 uncharacterized protein, YfiH family K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Clocl_0126 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D Clocl_2156 IMP dehydrogenase/GMP reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Clocl_1843 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Clocl_0577 hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D Clocl_1232 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D Clocl_3083 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Clocl_4147 cytosine/adenosine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D Clocl_2759 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D Clocl_3262 ribonucleoside-diphosphate reductase class II K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Clocl_0720 ribonucleoside-triphosphate reductase class III catalytic subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Clocl_1999 ribonucleoside-triphosphate reductase class III catalytic subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Clocl_2120 deoxyguanosinetriphosphate triphosphohydrolase, putative K01129 dgt; dGTPase [EC:3.1.5.1]
D Clocl_2134 deoxyguanosinetriphosphate triphosphohydrolase, putative K01129 dgt; dGTPase [EC:3.1.5.1]
D Clocl_2784 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Clocl_0801 hypothetical protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D Clocl_1050 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D Clocl_3289 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Clocl_1407 metallophosphoesterase, MG_246/BB_0505 family K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D Clocl_3874 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D Clocl_0329 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Clocl_3417 sulfate adenylyltransferase subunit 1, adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D Clocl_3418 PAPS reductase/FAD synthetase family protein K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:ccl00240]
D Clocl_2391 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Clocl_3349 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Clocl_2392 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Clocl_2395 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Clocl_2394 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Clocl_2389 dihydroorotate dehydrogenase family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D Clocl_2390 2-polyprenylphenol hydroxylase-like oxidoreductase K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D Clocl_2393 orotidine 5''-phosphate decarboxylase, subfamily 2 K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D Clocl_2465 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D Clocl_1843 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Clocl_0329 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Clocl_1111 MAF protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D Clocl_0634 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D Clocl_1847 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D Clocl_1303 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D Clocl_2479 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D Clocl_0290 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D Clocl_2397 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Clocl_1407 metallophosphoesterase, MG_246/BB_0505 family K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D Clocl_1469 pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]
D Clocl_2480 sugar kinase, ribokinase K22026 K22026; nucleoside kinase [EC:2.7.1.73 2.7.1.213 2.7.1.-]
D Clocl_1976 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D Clocl_1720 cytidine deaminase, homotetrameric K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D Clocl_0776 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D Clocl_0720 ribonucleoside-triphosphate reductase class III catalytic subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Clocl_1999 ribonucleoside-triphosphate reductase class III catalytic subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Clocl_3496 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D Clocl_3262 ribonucleoside-diphosphate reductase class II K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Clocl_0291 deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D Clocl_4030 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D Clocl_4002 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Clocl_0576 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Clocl_3035 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:ccl00250]
D Clocl_1804 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_2562 aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_4214 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Clocl_1088 aspartate-ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D Clocl_2585 asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Clocl_1384 putative amidohydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3]
D Clocl_1573 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D Clocl_1223 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Clocl_1222 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Clocl_3289 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Clocl_1803 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Clocl_2395 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Clocl_0016 glutamate synthase family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Clocl_0015 NADH/NADPH-dependent glutamate synthase small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Clocl_0079 NADPH-dependent glutamate synthase, homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Clocl_0082 glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Clocl_3945 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Clocl_1346 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Clocl_2391 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Clocl_3349 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Clocl_2392 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Clocl_2979 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Clocl_3070 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Clocl_3346 glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:ccl00260]
D Clocl_2886 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Clocl_1416 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Clocl_2887 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Clocl_2892 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Clocl_2938 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Clocl_1445 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Clocl_1155 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Clocl_4004 putative phosphoglycerate mutase, AP superfamily K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Clocl_2260 proposed homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Clocl_3331 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Clocl_3224 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Clocl_1853 fructose-2,6-bisphosphatase K22305 psp; phosphoserine phosphatase [EC:3.1.3.3]
D Clocl_0905 monoamine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D Clocl_0590 methyltransferase family protein K18896 gsmt; glycine/sarcosine N-methyltransferase [EC:2.1.1.156]
D Clocl_2476 tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Clocl_0967 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Clocl_0966 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Clocl_0996 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:ccl00270]
D Clocl_3981 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Clocl_2202 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Clocl_2305 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Clocl_2730 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Clocl_2004 Homocysteine S-methyltransferase/B12 binding domain/Pterin binding enzyme K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Clocl_0130 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Clocl_1844 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Clocl_1066 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Clocl_1492 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Clocl_3528 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Clocl_2010 methylthioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
D Clocl_2149 uncharacterized protein, YfiH family K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Clocl_3010 cytosine deaminase-like metal-dependent hydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D Clocl_2011 methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D Clocl_0518 haloacid dehalogenase superfamily protein, phosphoserine phosphatase/2,3-diketo-5-methylthio-1-phosphopentane phosphatase K08966 mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [EC:3.1.3.87]
D Clocl_1256 ribulose 1,5-bisphosphate carboxylase, large subunit K25035 rlp; S-methyl-5-thioribulose 1-phosphate isomerase [EC:5.3.3.23]
D Clocl_3011 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Clocl_2886 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Clocl_1416 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Clocl_2887 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Clocl_2206 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D Clocl_3421 cystathionine beta-lyase/cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Clocl_2203 O-acetylhomoserine sulfhydrolase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D Clocl_1354 branched-chain amino acid aminotransferase, group II K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Clocl_1804 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_2562 aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_3325 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Clocl_1449 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Clocl_3331 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Clocl_3224 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:ccl00280]
D Clocl_1354 branched-chain amino acid aminotransferase, group II K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Clocl_3758 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:ccl00290]
D Clocl_2902 homoaconitate hydratase family protein/3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Clocl_2901 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Clocl_4061 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Clocl_4144 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Clocl_4066 thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Clocl_0647 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Clocl_4143 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Clocl_4142 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Clocl_0646 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Clocl_1354 branched-chain amino acid aminotransferase, group II K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Clocl_4140 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Clocl_4141 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:ccl00300]
D Clocl_2887 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Clocl_2886 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Clocl_1416 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Clocl_2406 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Clocl_1796 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D Clocl_2407 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D Clocl_0490 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Clocl_3279 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Clocl_3278 LL-diaminopimelate aminotransferase apoenzyme K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D Clocl_1318 aspartate/tyrosine/aromatic aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D Clocl_1481 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Clocl_2080 diaminopimelate dehydrogenase K03340 dapdh; diaminopimelate dehydrogenase [EC:1.4.1.16]
D Clocl_2424 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Clocl_2423 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation
D Clocl_3758 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:ccl00220]
D Clocl_0489 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D Clocl_1223 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Clocl_1222 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Clocl_3945 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Clocl_1346 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Clocl_0082 glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Clocl_1804 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_2562 aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_1103 glutamate N-acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D Clocl_0492 N-acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D Clocl_0493 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D Clocl_0490 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:ccl00330]
D Clocl_0637 arginine/lysine/ornithine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D Clocl_1493 agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D Clocl_1492 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Clocl_3528 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Clocl_1844 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Clocl_1066 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Clocl_3758 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Clocl_0905 monoamine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D Clocl_1463 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Clocl_3823 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Clocl_1046 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D Clocl_1804 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_2562 aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:ccl00340]
D Clocl_3930 ATP phosphoribosyltransferase catalytic subunit K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D Clocl_3931 ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D Clocl_3922 phosphoribosyl-AMP cyclohydrolase, phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D Clocl_3924 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D Clocl_3925 imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D Clocl_1771 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D Clocl_3923 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D Clocl_3927 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D Clocl_3928 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Clocl_0744 PHP family phosphohydrolase, histidinol phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D Clocl_1834 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D Clocl_3929 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D Clocl_3758 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Clocl_0905 monoamine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00350 Tyrosine metabolism [PATH:ccl00350]
D Clocl_1804 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_2562 aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_3928 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Clocl_0905 monoamine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D Clocl_0117 alcohol dehydrogenase, class IV K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Clocl_1892 tryptophanase K01668 E4.1.99.2; tyrosine phenol-lyase [EC:4.1.99.2]
C 00360 Phenylalanine metabolism [PATH:ccl00360]
D Clocl_0905 monoamine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D Clocl_2724 coenzyme F390 synthetase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D Clocl_1735 coenzyme F390 synthetase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D Clocl_1804 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_2562 aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_3928 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Clocl_3102 isopropylmalate/homocitrate/citramalate synthase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00380 Tryptophan metabolism [PATH:ccl00380]
D Clocl_0620 putative metal-dependent hydrolase K07130 kynB; arylformamidase [EC:3.5.1.9]
D Clocl_0905 monoamine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D Clocl_3758 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ccl00400]
D Clocl_0540 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Clocl_2636 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Clocl_2012 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D Clocl_1361 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D Clocl_0073 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Clocl_1830 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Clocl_3296 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D Clocl_1829 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D Clocl_2630 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Clocl_2629 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Clocl_2628 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D Clocl_2626 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D Clocl_2627 Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D Clocl_2476 tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Clocl_0967 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Clocl_0966 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Clocl_0996 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Clocl_1848 monofunctional chorismate mutase, clade 1 K06208 aroH; chorismate mutase [EC:5.4.99.5]
D Clocl_2888 ACT domain-containing protein K06209 pheB; chorismate mutase [EC:5.4.99.5]
D Clocl_0539 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Clocl_0120 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D Clocl_1804 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_2562 aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_3928 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:ccl00410]
D Clocl_2124 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D Clocl_3758 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Clocl_2125 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:ccl00430]
D Clocl_2524 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Clocl_2523 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:ccl00450]
D Clocl_3421 cystathionine beta-lyase/cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Clocl_2730 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Clocl_2004 Homocysteine S-methyltransferase/B12 binding domain/Pterin binding enzyme K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Clocl_0605 thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Clocl_0606 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Clocl_3417 sulfate adenylyltransferase subunit 1, adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D Clocl_3418 PAPS reductase/FAD synthetase family protein K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Clocl_4020 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:ccl00460]
D Clocl_2223 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Clocl_2040 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Clocl_3244 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Clocl_1088 aspartate-ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D Clocl_2938 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Clocl_1445 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:ccl00470]
D Clocl_0406 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Clocl_2750 ATP-grasp enzyme, D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Clocl_0623 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Clocl_0624 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Clocl_1676 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Clocl_3279 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Clocl_1481 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:ccl00480]
D Clocl_1731 uncharacterized protein involved in cation transport K00682 GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]
D Clocl_1889 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D Clocl_1077 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Clocl_1492 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Clocl_3528 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis [PATH:ccl00515]
D Clocl_3039 dolichyl-phosphate-mannose--protein O-mannosyl transferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D Clocl_3282 dolichyl-phosphate-mannose--protein O-mannosyl transferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00514 Other types of O-glycan biosynthesis [PATH:ccl00514]
D Clocl_3039 dolichyl-phosphate-mannose--protein O-mannosyl transferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D Clocl_3282 dolichyl-phosphate-mannose--protein O-mannosyl transferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
D Clocl_2638 hypothetical protein K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:ccl00542]
D Clocl_0292 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ccl00541]
D Clocl_4130 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Clocl_1229 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Clocl_4077 nucleoside-diphosphate-sugar epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Clocl_1015 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Clocl_2817 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Clocl_2830 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Clocl_4191 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Clocl_1420 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Clocl_2832 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Clocl_2831 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Clocl_1331 phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Clocl_3957 nucleoside-diphosphate-sugar epimerase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D Clocl_1021 putative PLP-dependent enzyme possibly involved in cell wall biogenesis K13010 per; perosamine synthetase [EC:2.6.1.102]
D Clocl_1022 putative PLP-dependent enzyme possibly involved in cell wall biogenesis K13010 per; perosamine synthetase [EC:2.6.1.102]
D Clocl_0322 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Clocl_2922 hypothetical protein K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Clocl_0293 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Clocl_1020 putative nucleoside-diphosphate sugar epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D Clocl_4079 pseudaminic acid biosynthesis-associated protein PseG K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57]
D Clocl_4082 N-acetylneuraminate synthase K15898 pseI; pseudaminic acid synthase [EC:2.5.1.97]
C 00550 Peptidoglycan biosynthesis [PATH:ccl00550]
D Clocl_0307 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Clocl_4170 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Clocl_1133 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Clocl_0319 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Clocl_1676 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Clocl_2424 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Clocl_2750 ATP-grasp enzyme, D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Clocl_0623 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Clocl_2423 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Clocl_2462 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Clocl_3365 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Clocl_2422 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Clocl_2420 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Clocl_3816 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Clocl_1115 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Clocl_2472 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Clocl_2425 cell division protein FtsI/penicillin-binding protein 2 K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D Clocl_3308 cell division protein FtsI/penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A
D Clocl_3042 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_2042 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_1057 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_2993 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_1470 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_2858 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_2192 UDP-N-acetylmuramyl tripeptide synthase K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D Clocl_2193 putative glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:ccl00552]
D Clocl_3365 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Clocl_0292 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Clocl_0411 exopolysaccharide biosynthesis protein, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D Clocl_1348 cell envelope-related function transcriptional attenuator common domain protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Clocl_1831 cell envelope-related function transcriptional attenuator common domain protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Clocl_3277 cell envelope-related function transcriptional attenuator common domain protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Clocl_0053 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D Clocl_1218 phosphoglycerol transferase family protein, alkaline phosphatase superfamily K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D Clocl_1081 phosphoglycerol transferase family protein, alkaline phosphatase superfamily K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D Clocl_1018 LPS biosynthesis protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:ccl00543]
D Clocl_0292 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Clocl_1329 glycosyltransferase K20999 pslF; polysaccharide biosynthesis protein PslF
D Clocl_3981 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:ccl00730]
D Clocl_2542 hydroxymethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D Clocl_3523 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D Clocl_2544 thiamine biosynthesis protein ThiF, family 2 K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D Clocl_1838 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Clocl_1439 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Clocl_1440 thiazole biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Clocl_1570 iron-only hydrogenase maturation protein HydG K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D Clocl_2545 tyrosine lyase ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D Clocl_2058 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Clocl_2546 putative enzyme of thiazole biosynthesis K03149 thiG; thiazole synthase [EC:2.8.1.10]
D Clocl_3526 hydroxyethylthiazole kinase, sugar kinase family K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D Clocl_3525 thiamine monophosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D Clocl_2543 thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D Clocl_2565 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Clocl_2563 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D Clocl_3874 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:ccl00740]
D Clocl_1126 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Clocl_1124 diaminohydroxyphosphoribosylaminopyrimidine deaminase, 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Clocl_1127 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D Clocl_1125 riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D Clocl_2449 riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D Clocl_3526 hydroxyethylthiazole kinase, sugar kinase family K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D Clocl_2716 NTP pyrophosphohydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Clocl_1465 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:ccl00750]
D Clocl_3224 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Clocl_2892 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Clocl_2200 pyridoxal phosphate synthase yaaD subunit K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D Clocl_2199 pyridoxal phosphate synthase yaaE subunit K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:ccl00760]
D Clocl_4214 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Clocl_4215 quinolinate synthetase K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D Clocl_4213 nicotinate-nucleotide pyrophosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D Clocl_0991 putative nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D Clocl_3012 purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Clocl_1727 purine-nucleoside phosphorylase, DeoD family K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Clocl_0753 cytidyltransferase-related enzyme K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D Clocl_3056 nicotinate/nicotinamide nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D Clocl_0329 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Clocl_1271 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D Clocl_2411 NAD-dependent protein deacetylase, SIR2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D Clocl_2037 putative sugar kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:ccl00770]
D Clocl_4144 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Clocl_4066 thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Clocl_0647 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Clocl_4143 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Clocl_4142 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Clocl_0646 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Clocl_2126 ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D Clocl_2125 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D Clocl_4036 pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D Clocl_2757 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D Clocl_0329 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Clocl_2243 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D Clocl_2644 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D Clocl_1800 phosphopantetheine--protein transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D Clocl_1856 phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D Clocl_1354 branched-chain amino acid aminotransferase, group II K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Clocl_2124 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D Clocl_3758 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:ccl00780]
D Clocl_2376 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Clocl_1010 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Clocl_1027 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Clocl_2378 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Clocl_0318 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Clocl_1572 iron-only hydrogenase maturation protein HydE K01012 bioB; biotin synthase [EC:2.8.1.6]
D Clocl_0758 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D Clocl_4039 biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:ccl00790]
D Clocl_4052 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D Clocl_4042 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D Clocl_4041 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D Clocl_4043 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D Clocl_2605 folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D Clocl_1126 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Clocl_1790 anthranilate/para-aminobenzoate synthase component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D Clocl_1791 branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D Clocl_3272 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Clocl_3271 organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Clocl_3273 preQ(0) biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Clocl_3559 metal-dependent hydrolase, beta-lactamase superfamily II K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
C 00670 One carbon pool by folate [PATH:ccl00670]
D Clocl_0029 formyltetrahydrofolate synthetase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D Clocl_1404 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Clocl_2938 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Clocl_1445 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Clocl_3068 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Clocl_3067 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Clocl_4081 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Clocl_2572 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Clocl_2004 Homocysteine S-methyltransferase/B12 binding domain/Pterin binding enzyme K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Clocl_0576 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Clocl_3035 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D Clocl_2279 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:ccl00860]
D Clocl_0943 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Clocl_1783 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Clocl_3592 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Clocl_1788 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Clocl_3586 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Clocl_1787 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Clocl_3587 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Clocl_1785 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Clocl_3589 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Clocl_0779 uroporphyrinogen-III decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D Clocl_0789 uroporphyrinogen-III decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D Clocl_2303 uroporphyrinogen-III decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D Clocl_2710 methyltransferase, MtaA/CmuA family K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D Clocl_1287 Fe-S oxidoreductase, coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D Clocl_1786 uroporphyrinogen-III C-methyltransferase, uroporphyrinogen-III synthase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D Clocl_3588 uroporphyrin-III C-methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D Clocl_1784 siroheme synthase, N-terminal domain protein K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D Clocl_1789 hypothetical protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D Clocl_3595 precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D Clocl_3591 precorrin-3B C17-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D Clocl_3594 cobalt-precorrin 4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D Clocl_3593 cobalamin biosynthesis protein CbiG K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D Clocl_3590 precorrin-6x reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D Clocl_3596 cobalt-precorrin 5B C1-methyltransferase K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D Clocl_3584 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit,precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D Clocl_3578 precorrin isomerase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D Clocl_3810 cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D Clocl_3583 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing), cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D Clocl_3579 ATP:corrinoid adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Clocl_2409 ATP:corrinoid adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Clocl_3580 adenosylcobyric acid synthase (glutamine-hydrolysing) K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D Clocl_2885 cobalamin biosynthesis protein cobD/CbiB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D Clocl_3582 cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D Clocl_2884 adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D Clocl_2883 cobalamin-5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D Clocl_0785 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D Clocl_2882 alpha-ribazole phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D Clocl_3581 L-threonine-O-3-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
D Clocl_2285 protein of unknown function (DUF2383) K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:ccl00900]
D Clocl_2058 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Clocl_2460 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D Clocl_0568 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D Clocl_0034 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D Clocl_0573 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D Clocl_2458 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D Clocl_0865 isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D Clocl_2061 geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Clocl_2462 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D Clocl_3758 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D Clocl_0414 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Clocl_0415 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Clocl_1012 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Clocl_1013 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Clocl_1257 transketolase, alpha subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Clocl_1258 transketolase, beta subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
D Clocl_3956 Nucleoside-diphosphate-sugar pyrophosphorylase family protein K21210 ncsC; NDP-mannose synthase
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:ccl00523]
D Clocl_2830 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Clocl_4191 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Clocl_1420 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Clocl_2832 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Clocl_2831 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Clocl_4196 nucleoside-diphosphate-sugar epimerase K17947 wbiB; dTDP-L-rhamnose 4-epimerase [EC:5.1.3.25]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D Clocl_1776 chorismate mutase K04782 pchB; isochorismate pyruvate lyase [EC:4.2.99.21]
C 01055 Biosynthesis of vancomycin group antibiotics [PATH:ccl01055]
D Clocl_0919 alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46]
D Clocl_4191 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Clocl_1420 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:ccl00946]
D Clocl_2223 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Clocl_2040 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Clocl_3244 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis [PATH:ccl00311]
D Clocl_2221 acetyl esterase (deacetylase) K01060 cah; cephalosporin-C deacetylase [EC:3.1.1.41]
D Clocl_2991 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Clocl_0587 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:ccl00332]
D Clocl_3823 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Clocl_1046 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:ccl00261]
D Clocl_0919 alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46]
D Clocl_3417 sulfate adenylyltransferase subunit 1, adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D Clocl_3418 PAPS reductase/FAD synthetase family protein K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Clocl_2886 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Clocl_1416 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Clocl_2406 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Clocl_1796 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D Clocl_2407 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:ccl00521]
D Clocl_3057 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D Clocl_3860 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Clocl_2234 phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Clocl_2830 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Clocl_4191 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Clocl_1420 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Clocl_2832 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Clocl_2831 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D Clocl_3057 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D Clocl_3860 ROK family protein, putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:ccl00525]
D Clocl_2830 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Clocl_4191 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Clocl_1420 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:ccl00401]
D Clocl_0539 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Clocl_1804 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_2562 aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_3928 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D Clocl_2630 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Clocl_2629 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D Clocl_2664 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Clocl_2379 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Clocl_1010 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Clocl_1027 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Clocl_2378 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D Clocl_1860 acyl carrier protein K02078 acpP; acyl carrier protein
D Clocl_4084 acyl carrier protein K02078 acpP; acyl carrier protein
D Clocl_2377 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:ccl00999]
D Clocl_0130 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Clocl_2223 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Clocl_2040 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Clocl_3244 beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:ccl00362]
D Clocl_3102 isopropylmalate/homocitrate/citramalate synthase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D Clocl_0827 uncharacterized protein, 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D Clocl_1926 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Clocl_1498 biotin carboxyl carrier protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D Clocl_2258 hypothetical protein K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:ccl00625]
D Clocl_0117 alcohol dehydrogenase, class IV K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Clocl_3758 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Clocl_1280 nitrogenase molybdenum-iron protein, alpha and beta chains K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D Clocl_3789 nitrogenase molybdenum-iron protein, alpha and beta chains K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D Clocl_1265 Mo-nitrogenase MoFe protein subunit NifK K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D Clocl_2302 nitrogenase molybdenum-iron protein, alpha and beta chains K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D Clocl_2138 nitrogenase molybdenum-iron protein, alpha and beta chains K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D Clocl_1261 Mo-nitrogenase iron protein subunit NifH K02588 nifH; nitrogenase iron protein NifH
D Clocl_2292 nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D Clocl_2140 Mo-nitrogenase iron protein subunit NifH K02588 nifH; nitrogenase iron protein NifH
D Clocl_1264 Mo-nitrogenase MoFe protein subunit NifD precursor K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
D Clocl_1281 nitrogenase molybdenum-iron protein, alpha and beta chains K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
D Clocl_2139 nitrogenase molybdenum-iron protein, alpha and beta chains K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
D Clocl_3788 nitrogenase molybdenum-iron protein, alpha and beta chains K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
D Clocl_2301 nitrogenase molybdenum-iron protein, alpha and beta chains K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation [PATH:ccl00622]
D Clocl_0827 uncharacterized protein, 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D Clocl_3102 isopropylmalate/homocitrate/citramalate synthase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00633 Nitrotoluene degradation [PATH:ccl00633]
D Clocl_0951 Ni,Fe-hydrogenase I large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Clocl_0806 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Clocl_0520 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Clocl_2720 2-oxoacid:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Clocl_2719 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Clocl_2722 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Clocl_2721 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation [PATH:ccl00621]
D Clocl_0827 uncharacterized protein, 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D Clocl_3102 isopropylmalate/homocitrate/citramalate synthase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00626 Naphthalene degradation [PATH:ccl00626]
D Clocl_0117 alcohol dehydrogenase, class IV K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:ccl03020]
D Clocl_0655 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Clocl_0656 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Clocl_3866 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Clocl_2758 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D Clocl_3240 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:ccl03010]
D Clocl_2467 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Clocl_3889 ribosomal protein S3, bacterial type K02982 RP-S3; small subunit ribosomal protein S3
D Clocl_3867 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D Clocl_3878 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D Clocl_4134 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D Clocl_0659 ribosomal protein S7, bacterial/organelle K02992 RP-S7; small subunit ribosomal protein S7
D Clocl_3881 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Clocl_3857 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Clocl_3896 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D Clocl_3868 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Clocl_0658 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D Clocl_3869 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D Clocl_3882 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Clocl_1385 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Clocl_1760 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Clocl_3886 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D Clocl_4132 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D Clocl_3891 ribosomal protein S19, bacterial/organelle K02965 RP-S19; small subunit ribosomal protein S19
D Clocl_2536 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D Clocl_2790 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D Clocl_0652 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Clocl_3892 ribosomal protein L2, bacterial/organellar K02886 RP-L2; large subunit ribosomal protein L2
D Clocl_3895 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D Clocl_3894 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4
D Clocl_3883 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Clocl_3880 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D Clocl_0654 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12
D Clocl_0123 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D Clocl_0653 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Clocl_0651 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D Clocl_3858 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D Clocl_3885 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D Clocl_3876 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D Clocl_3888 ribosomal protein L16, bacterial/organelle K02878 RP-L16; large subunit ribosomal protein L16
D Clocl_3865 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Clocl_3879 ribosomal protein L18, bacterial type K02881 RP-L18; large subunit ribosomal protein L18
D Clocl_1816 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D Clocl_3031 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D Clocl_1209 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D Clocl_3890 ribosomal protein L22, bacterial type K02890 RP-L22; large subunit ribosomal protein L22
D Clocl_3893 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D Clocl_3884 ribosomal protein L24, bacterial/organelle K02895 RP-L24; large subunit ribosomal protein L24
D Clocl_1332 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25
D Clocl_2282 ribosomal protein L25 (general stress protein Ctc) K02897 RP-L25; large subunit ribosomal protein L25
D Clocl_1211 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D Clocl_2246 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D Clocl_3887 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Clocl_3877 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D Clocl_4116 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D Clocl_2521 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Clocl_0648 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Clocl_4230 Ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D Clocl_3032 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D Clocl_3870 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36
D Clocl_0657 ribosomal protein HS6-type (S12/L30/L7a) K07590 RP-L7A; large subunit ribosomal protein L7A
D Clocl_4220 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_2270 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3316 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3268 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3901 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3906 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3900 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_3266 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_3904 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_2269 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_4218 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_3315 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_2268 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_3265 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_4217 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_3903 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_3899 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_3314 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:ccl00970]
D Clocl_2558 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Clocl_3267 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Clocl_4219 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Clocl_0059 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Clocl_0084 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Clocl_0385 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Clocl_1234 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Clocl_3444 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Clocl_2116 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Clocl_3264 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Clocl_2267 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Clocl_0505 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Clocl_3286 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Clocl_0508 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Clocl_2741 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Clocl_1296 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Clocl_3965 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Clocl_2754 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Clocl_3287 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Clocl_0380 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Clocl_1130 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Clocl_1233 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Clocl_3976 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Clocl_0507 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Clocl_1129 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Clocl_1295 tRNA-His K14226 tRNA-His; tRNA His
D Clocl_3905 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Clocl_1325 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Clocl_2410 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Clocl_1907 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Clocl_0336 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Clocl_1674 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Clocl_1297 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Clocl_3966 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Clocl_3288 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Clocl_1906 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Clocl_1680 tRNA-Met K14230 tRNA-Met; tRNA Met
D Clocl_2115 tRNA-Met K14230 tRNA-Met; tRNA Met
D Clocl_0337 tRNA-Met K14230 tRNA-Met; tRNA Met
D Clocl_0379 tRNA-Met K14230 tRNA-Met; tRNA Met
D Clocl_0506 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Clocl_1679 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Clocl_4125 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Clocl_1663 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Clocl_3837 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Clocl_4164 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Clocl_0012 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Clocl_0013 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Clocl_0086 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Clocl_4119 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Clocl_3975 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Clocl_3007 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Clocl_3285 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Clocl_1462 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Clocl_1678 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Clocl_3284 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Clocl_2868 tRNA-Val K14237 tRNA-Val; tRNA Val
D Clocl_0381 tRNA-Val K14237 tRNA-Val; tRNA Val
D Clocl_4120 tRNA-Val K14237 tRNA-Val; tRNA Val
D Clocl_0504 tRNA-Val K14237 tRNA-Val; tRNA Val
D Clocl_0943 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Clocl_2526 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Clocl_2525 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Clocl_2527 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Clocl_2154 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Clocl_2838 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Clocl_2779 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Clocl_1089 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Clocl_2756 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Clocl_3036 Ser-tRNA(Thr) hydrolase, threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Clocl_0011 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Clocl_3980 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Clocl_4020 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Clocl_4081 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Clocl_2572 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Clocl_1259 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Clocl_1028 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Clocl_1048 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Clocl_3911 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Clocl_0626 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Clocl_2197 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Clocl_1049 prolyl-tRNA synthetase, family I K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Clocl_2780 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Clocl_1319 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Clocl_1320 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Clocl_1835 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Clocl_1485 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:ccl03060]
D Clocl_3875 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Clocl_0649 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Clocl_1194 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Clocl_2128 protein-export membrane protein, SecD/SecF family K03072 secD; preprotein translocase subunit SecD
D Clocl_2127 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF
D Clocl_2402 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Clocl_4227 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Clocl_2606 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Clocl_1759 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Clocl_0136 Bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D Clocl_2651 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Clocl_3998 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Clocl_1815 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Clocl_2778 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Clocl_3107 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Clocl_3384 hypothetical protein K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Clocl_3693 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Clocl_2133 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Clocl_2090 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:ccl04122]
D Clocl_1838 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Clocl_1439 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Clocl_1836 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Clocl_1440 thiazole biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Clocl_2547 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D Clocl_2544 thiamine biosynthesis protein ThiF, family 2 K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:ccl03018]
D Clocl_1193 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Clocl_1386 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Clocl_1197 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Clocl_2631 DNA/RNA helicase, superfamily II K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Clocl_4117 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Clocl_1406 hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Clocl_0952 hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Clocl_2287 hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Clocl_2229 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Clocl_2768 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Clocl_3918 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Clocl_1745 RNA-binding protein Hfq K03666 hfq; host factor-I protein
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:ccl03030]
D Clocl_2233 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Clocl_1903 DNA polymerase III, alpha chain K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Clocl_0137 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Clocl_4028 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Clocl_2537 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Clocl_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Clocl_0124 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Clocl_0245 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Clocl_0178 hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101]
D Clocl_2119 DNA primase, catalytic core K02316 dnaG; DNA primase [EC:2.7.7.101]
D Clocl_4133 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Clocl_1464 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Clocl_1813 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Clocl_2645 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Clocl_2532 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:ccl03410]
D Clocl_3983 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D Clocl_2251 endonuclease III, DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Clocl_3269 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Clocl_3270 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Clocl_1091 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Clocl_1360 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D Clocl_2645 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Clocl_1239 putative exonuclease, RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Clocl_2786 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Clocl_2532 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:ccl03420]
D Clocl_0325 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Clocl_3128 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D Clocl_3129 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D Clocl_0668 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D Clocl_3940 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Clocl_0472 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Clocl_1237 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Clocl_2645 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Clocl_2532 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Clocl_3240 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03430 Mismatch repair [PATH:ccl03430]
D Clocl_1742 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Clocl_0975 mismatch repair ATPase (MutS family) K03555 mutS; DNA mismatch repair protein MutS
D Clocl_2506 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D Clocl_1743 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Clocl_3940 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Clocl_0472 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Clocl_1237 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Clocl_2063 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Clocl_2062 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Clocl_1239 putative exonuclease, RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Clocl_2786 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Clocl_4133 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Clocl_2233 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Clocl_1903 DNA polymerase III, alpha chain K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Clocl_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Clocl_0137 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Clocl_2537 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Clocl_4028 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Clocl_2532 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:ccl03440]
D Clocl_1239 putative exonuclease, RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Clocl_2786 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Clocl_4133 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Clocl_0004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D Clocl_1436 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Clocl_0139 DNA replication and repair protein RecR K06187 recR; recombination protein RecR
D Clocl_1452 protein RecA K03553 recA; recombination protein RecA
D Clocl_2645 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Clocl_1225 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Clocl_1226 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Clocl_1224 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Clocl_2931 putative transcriptional regulator with HTH domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Clocl_2245 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Clocl_0280 putative transcriptional regulator with HTH domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Clocl_3921 putative transcriptional regulator with HTH domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Clocl_0134 helicase, putative, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Clocl_0924 helicase, putative, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Clocl_2233 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Clocl_1903 DNA polymerase III, alpha chain K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Clocl_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Clocl_0137 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Clocl_2537 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Clocl_4028 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Clocl_2574 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:ccl02010]
D Clocl_0513 sulfate/thiosulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Clocl_0514 sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Clocl_0515 sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D Clocl_0516 sulfate ABC transporter, ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Clocl_1299 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Clocl_1300 molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D Clocl_1301 ABC-type sulfate/molybdate transport systems, ATPase component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Clocl_1898 spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D Clocl_1899 ABC-type spermidine/putrescine transport system, permease component II K11070 potC; spermidine/putrescine transport system permease protein
D Clocl_1900 ABC-type spermidine/putrescine transport system, permease component I K11071 potB; spermidine/putrescine transport system permease protein
D Clocl_1901 spermidine/putrescine ABC transporter ATP-binding subunit K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D Clocl_0494 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Clocl_1244 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17318 lplA; putative aldouronate transport system substrate-binding protein
D Clocl_2087 ABC-type sugar transport system, periplasmic component K17318 lplA; putative aldouronate transport system substrate-binding protein
D Clocl_1242 ABC-type polysaccharide transport system, permease component K17319 lplB; putative aldouronate transport system permease protein
D Clocl_2086 ABC-type polysaccharide transport system, permease component K17319 lplB; putative aldouronate transport system permease protein
D Clocl_1243 carbohydrate ABC transporter membrane protein 2, CUT1 family K17320 lplC; putative aldouronate transport system permease protein
D Clocl_2085 carbohydrate ABC transporter membrane protein 2, CUT1 family K17320 lplC; putative aldouronate transport system permease protein
D Clocl_2515 ABC-type sugar transport system, periplasmic component K10240 cebE; cellobiose transport system substrate-binding protein
D Clocl_0388 carbohydrate ABC transporter substrate-binding protein, CUT1 family K10240 cebE; cellobiose transport system substrate-binding protein
D Clocl_2514 carbohydrate ABC transporter membrane protein 1, CUT1 family K10241 cebF; cellobiose transport system permease protein
D Clocl_2513 carbohydrate ABC transporter membrane protein 2, CUT1 family K10242 cebG; cellobiose transport system permease protein
D Clocl_4055 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10546 chvE; putative multiple sugar transport system substrate-binding protein
D Clocl_4053 ABC-type xylose transport system, permease component K10547 gguB; putative multiple sugar transport system permease protein
D Clocl_4054 ABC-type sugar transport system, ATPase component K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Clocl_2485 putative ABC-type transport system, periplasmic component/surface lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Clocl_1726 putative ABC-type transport system, periplasmic component/surface lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Clocl_1722 ABC-type uncharacterized transport system, permease component K23535 nupB; general nucleoside transport system permease protein
D Clocl_2483 ABC-type uncharacterized transport system, permease component K23535 nupB; general nucleoside transport system permease protein
D Clocl_2482 putative ABC-type transport system, permease component K23536 nupC; general nucleoside transport system permease protein
D Clocl_1721 putative ABC-type transport system, permease component K23536 nupC; general nucleoside transport system permease protein
D Clocl_2484 ATPase component of uncharacterized ABC-type transporter K23537 nupA; general nucleoside transport system ATP-binding protein
D Clocl_1723 ATPase component of uncharacterized ABC-type transporter K23537 nupA; general nucleoside transport system ATP-binding protein
D Clocl_0792 ABC-type sugar transport system, ATPase component K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Clocl_0793 ABC-type ribose transport system, auxiliary component K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D Clocl_1706 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein
D Clocl_1707 phosphate ABC transporter membrane protein 1, PhoT family K02037 pstC; phosphate transport system permease protein
D Clocl_1708 phosphate ABC transporter membrane protein 2, PhoT family K02038 pstA; phosphate transport system permease protein
D Clocl_1709 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Clocl_2275 amino acid ABC transporter substrate-binding protein, PAAT family K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D Clocl_2274 amino acid ABC transporter membrane protein, PAAT family K17077 artQ; arginine/lysine/histidine transport system permease protein
D Clocl_2273 amino acid ABC transporter ATP-binding protein, PAAT family K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D Clocl_2727 ABC-type metal ion transport system, periplasmic component/surface antigen K02073 metQ; D-methionine transport system substrate-binding protein
D Clocl_3783 ABC-type metal ion transport system, periplasmic component/surface antigen K02073 metQ; D-methionine transport system substrate-binding protein
D Clocl_3784 ABC-type metal ion transport system, permease component K02072 metI; D-methionine transport system permease protein
D Clocl_2725 ABC-type metal ion transport system, permease component K02072 metI; D-methionine transport system permease protein
D Clocl_3785 ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein
D Clocl_2726 ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein
D Clocl_0722 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Clocl_0871 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Clocl_0524 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Clocl_0875 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15581 oppB; oligopeptide transport system permease protein
D Clocl_0874 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15582 oppC; oligopeptide transport system permease protein
D Clocl_0873 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D Clocl_0872 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D Clocl_0998 ABC-type metal ion transport system, periplasmic component/surface adhesin K09815 znuA; zinc transport system substrate-binding protein
D Clocl_1000 ABC-type Mn2+/Zn2+ transport system, permease component K09816 znuB; zinc transport system permease protein
D Clocl_0999 ATPase component of Mn/Zn ABC-type transporter K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Clocl_3599 cobalt transport protein K02009 cbiN; cobalt/nickel transport protein
D Clocl_3600 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D Clocl_0362 ABC-type Co2+ transport system, permease component K02007 cbiM; cobalt/nickel transport system permease protein
D Clocl_3598 cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Clocl_0363 cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Clocl_3597 cobalt transport protein ATP-binding subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Clocl_0364 ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Clocl_3225 hypothetical protein K03523 bioY; biotin transport system substrate-specific component
D Clocl_3861 ABC-type cobalt transport system, permease component CbiQ K16785 ecfT; energy-coupling factor transport system permease protein
D Clocl_3864 ABC-type cobalt transport system, ATPase component K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Clocl_3862 ABC-type cobalt transport system, ATPase component K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Clocl_0570 ABC-type Na+ efflux pump, permease component K09696 natB; sodium transport system permease protein
D Clocl_0569 ABC-type Na+ transport system, ATPase component K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D Clocl_0770 lantibiotic protection ABC transporter permease subunit, MutE/EpiE family K20491 nisE; lantibiotic transport system permease protein
D Clocl_0771 lantibiotic protection ABC transporter permease subunit, MutG family K20492 nisG; lantibiotic transport system permease protein
D Clocl_0769 gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit K20490 nisF; lantibiotic transport system ATP-binding protein
D Clocl_0356 putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K19084 braE; bacitracin transport system permease protein
D Clocl_0357 ABC-type antimicrobial peptide transport system, ATPase component K19083 braD; bacitracin transport system ATP-binding protein
D Clocl_0497 cell division protein K09811 ftsX; cell division transport system permease protein
D Clocl_0496 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Clocl_3342 ABC-type multidrug transport system, ATPase and permease component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Clocl_0803 ABC-type multidrug transport system, ATPase and permease component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Clocl_0361 ABC-type multidrug transport system, ATPase and permease component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Clocl_0804 ABC-type multidrug transport system, ATPase and permease component K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Clocl_0360 ABC-type multidrug transport system, ATPase and permease component K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Clocl_3341 ABC-type multidrug transport system, ATPase and permease component K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Clocl_3387 ABC-type bacteriocin transporter K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D Clocl_2413 ATPase component of ABC transporters with duplicated ATPase domain K18231 msr; macrolide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:ccl02060]
D Clocl_0667 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Clocl_0666 phosphotransferase system HPr (HPr) family protein K02784 ptsH; phosphocarrier protein HPr
D Clocl_1138 phosphotransferase system HPr (HPr) family protein K02784 ptsH; phosphocarrier protein HPr
D Clocl_1199 HPr-related phosphotransferase system component K02784 ptsH; phosphocarrier protein HPr
D Clocl_1580 phosphotransferase system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
D Clocl_0594 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:ccl03070]
D Clocl_2128 protein-export membrane protein, SecD/SecF family K03072 secD; preprotein translocase subunit SecD
D Clocl_2127 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF
D Clocl_0649 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Clocl_1194 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Clocl_3875 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Clocl_2402 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Clocl_4227 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Clocl_2606 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Clocl_2651 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Clocl_1759 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:ccl02020]
D Clocl_2055 signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Clocl_1712 PAS domain S-box K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Clocl_2054 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D Clocl_1711 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D Clocl_3680 histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D Clocl_1706 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein
D Clocl_1890 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107]
D Clocl_2254 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107]
D Clocl_4092 flagellin/flagellar hook associated protein K02406 fliC; flagellin
D Clocl_4093 flagellin/flagellar hook associated protein K02406 fliC; flagellin
D Clocl_4094 flagellin/flagellar hook associated protein K02406 fliC; flagellin
D Clocl_1936 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D Clocl_0061 flagellar motor component K02556 motA; chemotaxis protein MotA
D Clocl_4174 signal transduction histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D Clocl_4175 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07668 vicR; two-component system, OmpR family, response regulator VicR
D Clocl_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Clocl_0356 putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K19084 braE; bacitracin transport system permease protein
D Clocl_0357 ABC-type antimicrobial peptide transport system, ATPase component K19083 braD; bacitracin transport system ATP-binding protein
D Clocl_0358 signal transduction histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D Clocl_0359 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR
D Clocl_3630 signal transduction histidine kinase K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Clocl_3631 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K18349 vanRC; two-component system, OmpR family, response regulator VanR
D Clocl_2787 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Clocl_1780 putative vancomycin resistance protein K18346 vanW; vancomycin resistance protein VanW
D Clocl_0773 histidine kinase,HAMP domain-containing protein,histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D Clocl_0772 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D Clocl_0769 gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit K20490 nisF; lantibiotic transport system ATP-binding protein
D Clocl_0770 lantibiotic protection ABC transporter permease subunit, MutE/EpiE family K20491 nisE; lantibiotic transport system permease protein
D Clocl_0771 lantibiotic protection ABC transporter permease subunit, MutG family K20492 nisG; lantibiotic transport system permease protein
D Clocl_3295 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D Clocl_2033 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D Clocl_3326 malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D Clocl_0569 ABC-type Na+ transport system, ATPase component K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D Clocl_0570 ABC-type Na+ efflux pump, permease component K09696 natB; sodium transport system permease protein
D Clocl_0766 protein possibly involved in post-translational modification of quorum-sensing peptides K07813 agrB; accessory gene regulator B
D Clocl_3548 protein possibly involved in post-translational modification of quorum-sensing peptides K07813 agrB; accessory gene regulator B
D Clocl_4216 protein possibly involved in post-translational modification of quorum-sensing peptides K07813 agrB; accessory gene regulator B
D Clocl_4106 hypothetical protein K07800 agrD; AgrD protein
D Clocl_3037 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D Clocl_4095 carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D Clocl_2240 histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D Clocl_2239 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07692 degU; two-component system, NarL family, response regulator DegU
D Clocl_3799 hypothetical protein K11621 liaG; lia operon protein LiaG
D Clocl_0421 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Clocl_2853 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Clocl_3120 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Clocl_0422 hypothetical protein K12510 tadB; tight adherence protein B
D Clocl_2852 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B
D Clocl_0423 Flp pilus assembly protein TadC K12511 tadC; tight adherence protein C
D Clocl_2851 Flp pilus assembly protein TadC K12511 tadC; tight adherence protein C
D Clocl_3942 nitrogen regulatory protein PII K04751 glnB; nitrogen regulatory protein P-II 1
D Clocl_3945 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Clocl_1346 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Clocl_1393 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D Clocl_1064 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D Clocl_0951 Ni,Fe-hydrogenase I large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Clocl_1842 methylase of chemotaxis methyl-accepting protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Clocl_2029 methylase of chemotaxis methyl-accepting protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Clocl_0763 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_0764 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_0974 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1821 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3354 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_4050 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_2879 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3398 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3402 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3487 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3509 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1324 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1548 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1549 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1779 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_2030 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_1102 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_0973 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_1940 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_2635 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_2031 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_1941 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_1097 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_2891 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_2764 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_2026 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_2032 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_1096 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_1952 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_0037 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Clocl_2028 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Clocl_1942 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Clocl_0386 putative signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Clocl_0387 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D Clocl_2872 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D Clocl_0781 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D Clocl_0293 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Clocl_3253 thioredoxin domain protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1981 endoglucanase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1806 dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_3001 Cellulose binding domain-containing protein,dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_3038 Cellulose binding domain-containing protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_3255 dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1566 Cellulose binding domain-containing protein,dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1567 thioredoxin domain protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1975 dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_2225 thioredoxin domain protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_3029 dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_3917 putative carbohydrate binding protein,dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_0350 endoglucanase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_3932 endoglucanase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1056 Cellulose binding domain-containing protein,dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1122 endoglucanase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_1864 Cellulose binding domain-containing protein,dockerin-like protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Clocl_4102 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:ccl02024]
D Clocl_1745 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Clocl_2630 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Clocl_2629 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Clocl_3390 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_3396 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_3969 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_1858 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_1719 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_1564 PDK repeat-containing protein K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Clocl_1824 beta-mannanase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Clocl_0901 beta-mannanase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Clocl_1124 diaminohydroxyphosphoribosylaminopyrimidine deaminase, 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Clocl_4106 hypothetical protein K07800 agrD; AgrD protein
D Clocl_0766 protein possibly involved in post-translational modification of quorum-sensing peptides K07813 agrB; accessory gene regulator B
D Clocl_3548 protein possibly involved in post-translational modification of quorum-sensing peptides K07813 agrB; accessory gene regulator B
D Clocl_4216 protein possibly involved in post-translational modification of quorum-sensing peptides K07813 agrB; accessory gene regulator B
D Clocl_3037 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D Clocl_0722 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Clocl_0871 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Clocl_0524 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Clocl_0875 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15581 oppB; oligopeptide transport system permease protein
D Clocl_0874 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15582 oppC; oligopeptide transport system permease protein
D Clocl_0873 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D Clocl_0872 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D Clocl_3387 ABC-type bacteriocin transporter K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D Clocl_0886 hypothetical protein K20345 blpB; membrane fusion protein, peptide pheromone/bacteriocin exporter
D Clocl_3386 hypothetical protein K20345 blpB; membrane fusion protein, peptide pheromone/bacteriocin exporter
D Clocl_0820 hypothetical protein K20345 blpB; membrane fusion protein, peptide pheromone/bacteriocin exporter
D Clocl_2148 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Clocl_4227 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Clocl_0649 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Clocl_1194 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Clocl_3875 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Clocl_2402 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Clocl_2606 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Clocl_2651 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Clocl_1759 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Clocl_2239 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07692 degU; two-component system, NarL family, response regulator DegU
D Clocl_3295 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D Clocl_2033 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D Clocl_2848 Zinc dependent phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D Clocl_0773 histidine kinase,HAMP domain-containing protein,histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D Clocl_0772 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D Clocl_0769 gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit K20490 nisF; lantibiotic transport system ATP-binding protein
D Clocl_0770 lantibiotic protection ABC transporter permease subunit, MutE/EpiE family K20491 nisE; lantibiotic transport system permease protein
D Clocl_0771 lantibiotic protection ABC transporter permease subunit, MutG family K20492 nisG; lantibiotic transport system permease protein
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:ccl02030]
D Clocl_0763 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_0764 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_0974 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1821 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3354 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_4050 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_2879 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3398 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3402 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3487 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3509 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1324 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1548 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1549 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1779 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_2031 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_1941 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_1097 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_2030 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_1102 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_0973 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_1940 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_2635 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_2891 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_2764 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_2026 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_2032 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_1096 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_1952 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_1939 chemotaxis protein CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC
D Clocl_1147 putative inhibitor of MCP methylation, CheC K03409 cheX; chemotaxis protein CheX
D Clocl_2162 putative inhibitor of MCP methylation, CheC K03409 cheX; chemotaxis protein CheX
D Clocl_0037 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Clocl_2028 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Clocl_1942 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Clocl_1938 chemotaxis protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D Clocl_1842 methylase of chemotaxis methyl-accepting protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Clocl_2029 methylase of chemotaxis methyl-accepting protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Clocl_1966 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Clocl_1954 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Clocl_1953 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Clocl_0061 flagellar motor component K02556 motA; chemotaxis protein MotA
D Clocl_0062 flagellar motor protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:ccl02040]
D Clocl_1968 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D Clocl_1967 flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF K02409 fliF; flagellar M-ring protein FliF
D Clocl_1966 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Clocl_1965 flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH
D Clocl_1964 type III secretion system ATPase, FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Clocl_1963 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D Clocl_1960 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D Clocl_1954 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Clocl_1953 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Clocl_1951 flagellar biogenesis protein K02418 fliO; flagellar protein FliO/FliZ
D Clocl_1950 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Clocl_1949 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Clocl_1948 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Clocl_1946 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Clocl_1947 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Clocl_1970 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Clocl_1969 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D Clocl_1959 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Clocl_1957 flagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE
D Clocl_0315 flagellar hook-basal body protein K02391 flgF; flagellar basal-body rod protein FlgF
D Clocl_0316 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D Clocl_0317 Rod binding protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D Clocl_4099 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Clocl_4100 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Clocl_4098 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D Clocl_4092 flagellin/flagellar hook associated protein K02406 fliC; flagellin
D Clocl_4093 flagellin/flagellar hook associated protein K02406 fliC; flagellin
D Clocl_4094 flagellin/flagellar hook associated protein K02406 fliC; flagellin
D Clocl_4075 flagellar capping protein K02407 fliD; flagellar hook-associated protein 2
D Clocl_4074 flagellar biosynthetic protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Clocl_0061 flagellar motor component K02556 motA; chemotaxis protein MotA
D Clocl_0062 flagellar motor protein K02557 motB; chemotaxis protein MotB
D Clocl_4102 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D Clocl_2118 RNA polymerase, sigma 38 subunit, RpoS K03086 rpoD; RNA polymerase primary sigma factor
D Clocl_1936 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D Clocl_1193 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D Clocl_2004 Homocysteine S-methyltransferase/B12 binding domain/Pterin binding enzyme K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:ccl01501]
D Clocl_0722 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Clocl_0871 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Clocl_0524 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Clocl_0875 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15581 oppB; oligopeptide transport system permease protein
D Clocl_0874 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15582 oppC; oligopeptide transport system permease protein
D Clocl_0873 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D Clocl_0872 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D Clocl_3433 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_1896 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_3512 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_3654 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_3534 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_1895 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_3655 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_2025 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_0904 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_3533 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_3432 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_2991 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Clocl_0587 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Clocl_3816 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Clocl_1115 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Clocl_2472 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:ccl01502]
D Clocl_3630 signal transduction histidine kinase K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Clocl_3631 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K18349 vanRC; two-component system, OmpR family, response regulator VanR
D Clocl_2787 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Clocl_2750 ATP-grasp enzyme, D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Clocl_0623 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Clocl_0406 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Clocl_2423 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Clocl_2422 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Clocl_2420 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Clocl_1780 putative vancomycin resistance protein K18346 vanW; vancomycin resistance protein VanW
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ccl01503]
D Clocl_0527 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_1228 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_1668 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_2534 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_2508 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_1890 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107]
D Clocl_2254 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:ccl01000]
C 01001 Protein kinases [BR:ccl01001]
D Clocl_2566 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Clocl_1241 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Clocl_1305 anti-sigma regulatory factor (Ser/Thr protein kinase) K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
D Clocl_3907 anti-sigma regulatory factor (Ser/Thr protein kinase) K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Clocl_3909 anti-sigma regulatory factor (Ser/Thr protein kinase) K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Clocl_2856 anti-sigma regulatory factor (Ser/Thr protein kinase) K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Clocl_1005 capsular exopolysaccharide biosynthesis protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D Clocl_2833 capsular exopolysaccharide biosynthesis protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D Clocl_2055 signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Clocl_1712 PAS domain S-box K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Clocl_3680 histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D Clocl_4174 signal transduction histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D Clocl_0358 signal transduction histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D Clocl_3630 signal transduction histidine kinase K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Clocl_0773 histidine kinase,HAMP domain-containing protein,histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D Clocl_2240 histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D Clocl_3037 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D Clocl_0571 signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Clocl_0572 signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Clocl_2031 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_1941 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_1097 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_0386 putative signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:ccl01009]
D Clocl_3011 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Clocl_2229 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Clocl_2593 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG
D Clocl_2894 serine/threonine protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D Clocl_0435 serine/threonine protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D Clocl_1240 serine/threonine protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D Clocl_2567 serine/threonine protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:ccl01002]
D Clocl_3384 hypothetical protein K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Clocl_3693 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Clocl_2133 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Clocl_0432 Flp pilus assembly protein, protease CpaA K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Clocl_2895 prepilin signal peptidase PulO-like peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Clocl_1358 prepilin signal peptidase PulO-like peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Clocl_2595 Flp pilus assembly protein, protease CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D Clocl_2535 GPR endopeptidase K06012 gpr; spore protease [EC:3.4.24.78]
D Clocl_2185 sigma-E processing peptidase SpoIIGA K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-]
D Clocl_3083 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Clocl_4108 putative glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase
D Clocl_3387 ABC-type bacteriocin transporter K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D Clocl_0044 cell wall-associated hydrolase, invasion-associated protein K20742 ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]
D Clocl_3070 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Clocl_3346 glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Clocl_0016 glutamate synthase family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Clocl_2979 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Clocl_2585 asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Clocl_0766 protein possibly involved in post-translational modification of quorum-sensing peptides K07813 agrB; accessory gene regulator B
D Clocl_3548 protein possibly involved in post-translational modification of quorum-sensing peptides K07813 agrB; accessory gene regulator B
D Clocl_4216 protein possibly involved in post-translational modification of quorum-sensing peptides K07813 agrB; accessory gene regulator B
D Clocl_0056 putative metal-dependent membrane protease K07052 K07052; CAAX protease family protein
D Clocl_3949 putative metal-dependent membrane protease K07052 K07052; CAAX protease family protein
D Clocl_2278 CAAX amino terminal protease family K07052 K07052; CAAX protease family protein
D Clocl_0076 oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D Clocl_4150 gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase I K01308 yqgT; g-D-glutamyl-meso-diaminopimelate peptidase [EC:3.4.19.11]
D Clocl_2787 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Clocl_1805 Zn-dependent dipeptidase, microsomal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D Clocl_1149 peptidase T-like protein K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D Clocl_1889 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D Clocl_3873 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Clocl_2600 Xaa-Pro aminopeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D Clocl_1362 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D Clocl_0075 leucyl aminopeptidase (aminopeptidase T) K19689 ampS; aminopeptidase [EC:3.4.11.-]
D Clocl_4059 isoaspartyl dipeptidase IadA K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]
D Clocl_3845 ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Clocl_0127 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Clocl_1121 Zn-dependent protease K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-]
D Clocl_2459 RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D Clocl_3803 hypothetical protein K16922 yydH; putative peptide zinc metalloprotease protein
D Clocl_3433 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_1896 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_3512 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_3654 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_3534 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_1890 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107]
D Clocl_2254 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107]
D Clocl_1293 subtilisin-like serine protease K13277 epr; minor extracellular protease Epr [EC:3.4.21.-]
D Clocl_3042 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_2042 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_1057 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_2993 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_1470 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_2858 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_0671 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Clocl_3717 protease subunit of ATP-dependent protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Clocl_1104 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Clocl_2929 hypothetical protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Clocl_0256 hypothetical protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Clocl_0674 ATP-dependent protease LonB K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53]
D Clocl_1746 SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Clocl_4060 SOS response transcriptional repressor, RecA-mediated autopeptidase K01356 lexA; repressor LexA [EC:3.4.21.88]
D Clocl_3998 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Clocl_1815 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Clocl_2778 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Clocl_3107 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Clocl_2090 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D Clocl_0499 C-terminal processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Clocl_0631 C-terminal processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Clocl_4057 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6]
D Clocl_3313 putative membrane protein K19225 gluP; rhomboid protease GluP [EC:3.4.21.105]
D Clocl_2034 stage IV sporulation protein B K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116]
D Clocl_2471 collagenase-like protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D Clocl_4003 collagenase-like protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D Clocl_1071 large extracellular alpha-helical protein K06894 yfhM; alpha-2-macroglobulin
D Clocl_0467 large extracellular alpha-helical protein K06894 yfhM; alpha-2-macroglobulin
D Clocl_1454 membrane protease subunit, stomatin/prohibitin K04087 hflC; modulator of FtsH protease HflC
D Clocl_1453 HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:ccl01003]
D Clocl_3407 glycosyl transferase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D Clocl_3039 dolichyl-phosphate-mannose--protein O-mannosyl transferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D Clocl_3282 dolichyl-phosphate-mannose--protein O-mannosyl transferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D Clocl_0053 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D Clocl_2252 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D Clocl_1073 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D Clocl_3816 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Clocl_1329 glycosyltransferase K20999 pslF; polysaccharide biosynthesis protein PslF
D Clocl_3959 glycosyltransferase K21011 pelF; polysaccharide biosynthesis protein PelF
D Clocl_0411 exopolysaccharide biosynthesis protein, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D Clocl_0292 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Clocl_3028 cellobiose phosphorylase K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:ccl01005]
D Clocl_3410 glycosyl transferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D Clocl_3283 glycosyl transferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D Clocl_0292 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Clocl_2555 glycosyl transferase K12999 rgpI; glucosyltransferase [EC:2.4.1.-]
D Clocl_4198 glycosyl transferase possibly involved in lipopolysaccharide synthesis K13012 wbqP; O-antigen biosynthesis protein WbqP
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ccl01011]
D Clocl_0307 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Clocl_4170 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Clocl_1133 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Clocl_0319 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Clocl_1676 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Clocl_2424 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Clocl_2750 ATP-grasp enzyme, D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Clocl_0623 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Clocl_0406 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Clocl_0624 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Clocl_2422 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Clocl_2420 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Clocl_3365 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Clocl_0399 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Clocl_1451 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Clocl_3816 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Clocl_1115 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Clocl_2472 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Clocl_2425 cell division protein FtsI/penicillin-binding protein 2 K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D Clocl_3308 cell division protein FtsI/penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A
D Clocl_3042 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_2042 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_1057 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_2993 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_1470 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_2858 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Clocl_2787 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Clocl_1565 soluble lytic murein transglycosylase-like protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Clocl_2643 soluble lytic murein transglycosylase-like protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Clocl_2469 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D Clocl_0598 spore cortex-lytic enzyme K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Clocl_0054 spore cortex-lytic enzyme K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Clocl_0308 stage II sporulation protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D Clocl_2405 SpoIID/LytB domain protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D Clocl_0527 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_1228 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_1668 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_2534 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_2508 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:ccl01004]
D Clocl_2664 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Clocl_2379 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Clocl_1859 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Clocl_1861 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Clocl_2380 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Clocl_2376 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Clocl_1010 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Clocl_1027 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Clocl_2378 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Clocl_0318 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Clocl_1655 putative paraquat-inducible protein B K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D Clocl_2592 acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Clocl_3390 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_3396 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_3969 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_1858 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_1719 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_0938 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D Clocl_2381 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Clocl_2518 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Clocl_1846 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:ccl01008]
D Clocl_0919 alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46]
C 01006 Prenyltransferases [BR:ccl01006]
D Clocl_2061 geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Clocl_2462 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Clocl_1744 tRNA isopentenyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
C 01007 Amino acid related enzymes [BR:ccl01007]
D Clocl_0943 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Clocl_2154 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Clocl_1835 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Clocl_1485 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Clocl_3980 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Clocl_0626 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Clocl_4020 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Clocl_1048 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Clocl_1259 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Clocl_1028 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Clocl_3911 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Clocl_2779 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Clocl_1089 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Clocl_2780 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Clocl_2756 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Clocl_0011 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Clocl_2197 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Clocl_1049 prolyl-tRNA synthetase, family I K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Clocl_3036 Ser-tRNA(Thr) hydrolase, threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Clocl_2838 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Clocl_1319 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Clocl_1320 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Clocl_1804 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_2562 aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Clocl_3278 LL-diaminopimelate aminotransferase apoenzyme K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D Clocl_1318 aspartate/tyrosine/aromatic aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D Clocl_3093 aspartate/tyrosine/aromatic aminotransferase K10907 K10907; aminotransferase [EC:2.6.1.-]
D Clocl_3928 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Clocl_2730 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Clocl_0490 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Clocl_1788 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Clocl_3586 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Clocl_1354 branched-chain amino acid aminotransferase, group II K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Clocl_3224 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Clocl_1021 putative PLP-dependent enzyme possibly involved in cell wall biogenesis K13010 per; perosamine synthetase [EC:2.6.1.102]
D Clocl_1022 putative PLP-dependent enzyme possibly involved in cell wall biogenesis K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:ccl00194]
D Clocl_0302 ATP synthase, F1 epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Clocl_0301 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Clocl_0300 ATP synthase, F1 gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Clocl_0299 ATP synthase F1 subcomplex alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Clocl_0298 ATP synthase F1 subcomplex delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Clocl_0297 ATP synthase F0 subcomplex B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Clocl_0296 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Clocl_0295 F0F1-type ATP synthase, alpha subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:ccl03000]
D Clocl_3489 DNA-binding domain-containing protein, AraC-type K13653 K13653; AraC family transcriptional regulator
D Clocl_3184 DNA-binding domain-containing protein, AraC-type K13653 K13653; AraC family transcriptional regulator
D Clocl_0734 hypothetical protein K13653 K13653; AraC family transcriptional regulator
D Clocl_1317 DNA-binding domain-containing protein, AraC-type K07506 K07506; AraC family transcriptional regulator
D Clocl_0313 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D Clocl_0787 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Clocl_0463 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Clocl_4167 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Clocl_1812 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Clocl_2436 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Clocl_2486 transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D Clocl_2201 transcriptional regulator with HTH domain and aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Clocl_2594 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Clocl_0934 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Clocl_0170 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Clocl_2114 cAMP-binding protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D Clocl_2732 rrf2 family protein, putative transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D Clocl_3786 rrf2 family protein, putative transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D Clocl_2205 rrf2 family protein, putative transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D Clocl_1839 rrf2 family protein, putative transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D Clocl_0228 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Clocl_2974 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Clocl_0154 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Clocl_3243 putative transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D Clocl_3695 putative transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D Clocl_3801 putative transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D Clocl_4048 putative transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D Clocl_2990 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D Clocl_2911 Mn-dependent transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D Clocl_1895 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_3655 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_2025 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_0904 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_3533 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_3432 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_4039 biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Clocl_0753 cytidyltransferase-related enzyme K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D Clocl_0320 pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D Clocl_0495 sugar diacid utilization regulator K02647 cdaR; carbohydrate diacid regulator
D Clocl_0534 AT-rich DNA-binding protein K01926 rex; redox-sensing transcriptional repressor
D Clocl_3642 putative transcriptional regulator K07727 K07727; putative transcriptional regulator
D Clocl_3769 putative transcriptional regulator K07727 K07727; putative transcriptional regulator
D Clocl_0698 putative transcriptional regulator K07727 K07727; putative transcriptional regulator
D Clocl_4152 putative transcriptional regulator K07729 K07729; putative transcriptional regulator
D Clocl_0407 putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
D Clocl_3097 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Clocl_4023 looped-hinge helix DNA binding domain, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D Clocl_0327 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D Clocl_0008 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Clocl_4222 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Clocl_0567 CarD-like transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Clocl_2036 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism
D Clocl_2770 heat shock gene repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Clocl_0544 transcriptional repressor of class III stress genes K03708 ctsR; transcriptional regulator of stress and heat shock response
D Clocl_1093 putative stress-responsive transcriptional regulator K03973 pspC; phage shock protein C
D Clocl_4010 putative stress-responsive transcriptional regulator K03973 pspC; phage shock protein C
D Clocl_2232 Tryptophan RNA-binding attenuator protein K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D Clocl_2397 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Clocl_2181 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D Clocl_2428 mraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:ccl03021]
D Clocl_3240 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D Clocl_3866 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Clocl_0655 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Clocl_0656 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Clocl_2758 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Clocl_2118 RNA polymerase, sigma 38 subunit, RpoS K03086 rpoD; RNA polymerase primary sigma factor
D Clocl_3544 DNA-directed RNA polymerase specialized sigma subunit K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Clocl_1370 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Clocl_1336 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Clocl_1877 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Clocl_3756 RNA polymerase, sigma subunit, SigV K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Clocl_3339 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Clocl_3613 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Clocl_0612 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Clocl_2625 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Clocl_2649 RNA polymerase, sigma-24 subunit, RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Clocl_3653 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Clocl_3908 RNA polymerase sigma-70 factor, sigma-B/F/G subfamily K03090 sigB; RNA polymerase sigma-B factor
D Clocl_1141 RNA polymerase, sigma subunit, RpoX/SigF K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D Clocl_2183 RNA polymerase, sigma subunit, RpsG/SigG K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D Clocl_2184 RNA polymerase, sigma 29 subunit, SigE K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D Clocl_2474 RNA polymerase, sigma 27/28 subunit, RpsK/SigK K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D Clocl_3977 RNA polymerase, sigma 30 subunit, SigH K27000 sigH; RNA polymerase sigma-H factor
D Clocl_4137 RNA polymerase sigma-I factor K03093 sigI; RNA polymerase sigma-I factor
D Clocl_2748 RNA polymerase sigma-I factor K03093 sigI; RNA polymerase sigma-I factor
D Clocl_2798 RNA polymerase sigma-I factor K03093 sigI; RNA polymerase sigma-I factor
D Clocl_2045 RNA polymerase sigma-I factor K03093 sigI; RNA polymerase sigma-I factor
D Clocl_1054 RNA polymerase sigma-I factor K03093 sigI; RNA polymerase sigma-I factor
D Clocl_4009 RNA polymerase sigma-I factor K03093 sigI; RNA polymerase sigma-I factor
D Clocl_2099 RNA polymerase sigma-I factor K03093 sigI; RNA polymerase sigma-I factor
D Clocl_2844 RNA polymerase sigma-I factor K03093 sigI; RNA polymerase sigma-I factor
D Clocl_1936 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D Clocl_2456 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D Clocl_2064 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D Clocl_0650 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D Clocl_2829 transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG
D Clocl_1305 anti-sigma regulatory factor (Ser/Thr protein kinase) K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
D Clocl_1249 PAS domain S-box K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D Clocl_2560 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D Clocl_4114 PAS domain S-box K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D Clocl_3910 anti-anti-sigma factor K04749 rsbV; anti-sigma B factor antagonist
D Clocl_3907 anti-sigma regulatory factor (Ser/Thr protein kinase) K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Clocl_3909 anti-sigma regulatory factor (Ser/Thr protein kinase) K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Clocl_2856 anti-sigma regulatory factor (Ser/Thr protein kinase) K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Clocl_3332 transcription elongation factor K03624 greA; transcription elongation factor GreA
D Clocl_3912 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Clocl_4117 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:ccl03019]
D Clocl_1208 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-]
D Clocl_2375 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Clocl_0952 hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Clocl_2287 hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Clocl_1406 hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Clocl_1197 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Clocl_2631 DNA/RNA helicase, superfamily II K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Clocl_1193 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Clocl_1386 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Clocl_4117 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Clocl_2229 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Clocl_2768 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Clocl_3918 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Clocl_1745 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Clocl_4095 carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D Clocl_1134 putative P-loop-containing kinase K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:ccl03011]
D Clocl_2467 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Clocl_3889 ribosomal protein S3, bacterial type K02982 RP-S3; small subunit ribosomal protein S3
D Clocl_3867 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D Clocl_3878 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D Clocl_4134 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D Clocl_0659 ribosomal protein S7, bacterial/organelle K02992 RP-S7; small subunit ribosomal protein S7
D Clocl_3881 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Clocl_3857 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Clocl_3896 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D Clocl_3868 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Clocl_0658 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D Clocl_3869 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D Clocl_3882 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Clocl_1385 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Clocl_1760 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Clocl_3886 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D Clocl_4132 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D Clocl_3891 ribosomal protein S19, bacterial/organelle K02965 RP-S19; small subunit ribosomal protein S19
D Clocl_2536 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D Clocl_2790 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D Clocl_0652 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Clocl_3892 ribosomal protein L2, bacterial/organellar K02886 RP-L2; large subunit ribosomal protein L2
D Clocl_3895 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D Clocl_3894 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4
D Clocl_3883 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Clocl_3880 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D Clocl_0123 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D Clocl_0653 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Clocl_0651 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D Clocl_0654 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12
D Clocl_3858 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D Clocl_3885 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D Clocl_3876 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D Clocl_3888 ribosomal protein L16, bacterial/organelle K02878 RP-L16; large subunit ribosomal protein L16
D Clocl_3865 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Clocl_3879 ribosomal protein L18, bacterial type K02881 RP-L18; large subunit ribosomal protein L18
D Clocl_1816 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D Clocl_3031 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D Clocl_1209 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D Clocl_3890 ribosomal protein L22, bacterial type K02890 RP-L22; large subunit ribosomal protein L22
D Clocl_3893 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D Clocl_3884 ribosomal protein L24, bacterial/organelle K02895 RP-L24; large subunit ribosomal protein L24
D Clocl_1211 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D Clocl_2246 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D Clocl_3887 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Clocl_3877 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D Clocl_4116 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D Clocl_2521 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Clocl_0648 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Clocl_4230 Ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D Clocl_3032 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D Clocl_3870 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36
D Clocl_1332 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25
D Clocl_2282 ribosomal protein L25 (general stress protein Ctc) K02897 RP-L25; large subunit ribosomal protein L25
D Clocl_0657 ribosomal protein HS6-type (S12/L30/L7a) K07590 RP-L7A; large subunit ribosomal protein L7A
D Clocl_2268 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_3265 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_4217 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_3903 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_3899 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_3314 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_4220 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_2270 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3316 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3268 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3901 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3906 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3900 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_3266 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_3904 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_2269 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_4218 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_3315 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:ccl03009]
D Clocl_2375 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Clocl_1434 GTP-binding protein Era K03595 era; GTPase
D Clocl_1212 Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D Clocl_2456 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D Clocl_2064 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D Clocl_0650 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D Clocl_2829 transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG
D Clocl_2877 pseudouridine synthase family protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D Clocl_4016 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Clocl_2569 ribosomal RNA small subunit methyltransferase RsmB/transcription antitermination factor NusB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Clocl_3863 16S RNA G1207 methylase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D Clocl_2244 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Clocl_2765 RNA methyltransferase, RsmE family K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Clocl_4223 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Clocl_2427 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Clocl_4024 putative S-adenosylmethionine-dependent methyltransferase, YraL family K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Clocl_2057 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D Clocl_3978 rRNA methylase, putative, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Clocl_4168 rRNA large subunit m3Psi methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Clocl_1068 putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Clocl_1732 putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Clocl_2568 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Clocl_3749 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Clocl_1490 pseudouridine synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Clocl_0584 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D Clocl_2021 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Clocl_1069 23S RNA-specific pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Clocl_2132 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Clocl_3839 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Clocl_1762 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D Clocl_2384 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D Clocl_2766 (LSU ribosomal protein L11P)-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D Clocl_1208 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-]
D Clocl_1203 RNAse H-fold protein YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D Clocl_3979 hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
D Clocl_2631 DNA/RNA helicase, superfamily II K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Clocl_2565 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Clocl_2519 ribosome-associated GTPase EngA K03977 engA; GTPase
D Clocl_1814 ribosome biogenesis GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A
D Clocl_4000 GTP-binding protein HflX K03665 hflX; GTPase
D Clocl_0287 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Clocl_2784 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Clocl_2452 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D Clocl_2457 hypothetical protein K09748 rimP; ribosome maturation factor RimP
D Clocl_0003 S4 domain protein YaaA K14761 rlbA; ribosome-associated protein
D Clocl_3053 iojap-like ribosome-associated protein K09710 ybeB; ribosome-associated protein
D Clocl_1433 metalloprotein, YbeY/UPF0054 family K07042 ybeY; probable rRNA maturation factor
D Clocl_1214 putative RNA-binding protein, YhbY family K07574 yhbY; RNA-binding protein
D Clocl_3941 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D Clocl_2634 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D Clocl_2522 putative metal-binding protein, possibly nucleic-acid binding protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:ccl03016]
D Clocl_0799 RNAse Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D Clocl_1483 tRNA nucleotidyltransferase/poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D Clocl_2610 tRNA nucleotidyltransferase/poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D Clocl_0797 hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D Clocl_0943 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Clocl_2197 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Clocl_1049 prolyl-tRNA synthetase, family I K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Clocl_1048 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Clocl_1028 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Clocl_4020 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Clocl_2154 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Clocl_0626 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Clocl_3911 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Clocl_2779 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Clocl_2838 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Clocl_1089 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Clocl_2756 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Clocl_3036 Ser-tRNA(Thr) hydrolase, threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Clocl_0011 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Clocl_3980 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Clocl_1259 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Clocl_2780 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Clocl_1319 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Clocl_1320 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Clocl_1835 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Clocl_1485 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Clocl_2783 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Clocl_2837 HIT family hydrolase, diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Clocl_0959 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Clocl_1078 pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Clocl_3859 pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Clocl_2450 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Clocl_1838 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Clocl_1439 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Clocl_0287 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Clocl_1744 tRNA isopentenyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Clocl_4225 tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Clocl_4224 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Clocl_2735 hypothetical protein K10761 THG1; tRNA(His) guanylyltransferase [EC:2.7.7.79]
D Clocl_4229 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D Clocl_2109 Bacterial RNase P class A K01978 rnpB; M1 RNA
D Clocl_1231 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D Clocl_3530 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D Clocl_0759 RNA:NAD 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
D Clocl_0958 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D Clocl_0085 cytosine/adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D Clocl_0391 tRNA-U20-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D Clocl_1740 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D Clocl_1200 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D Clocl_1677 methyltransferase family protein K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D Clocl_1687 methylase involved in ubiquinone/menaquinone biosynthesis K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D Clocl_1971 tRNA:m(5)U-54 methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D Clocl_1763 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Clocl_2111 putative SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D Clocl_1148 rRNA methylase, putative, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Clocl_4025 putative O-methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D Clocl_3030 rRNA methylase, putative, group 3 K03437 spoU; RNA methyltransferase, TrmH family
D Clocl_1836 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Clocl_4126 putative ATPase of the PP-loop superfamily implicated in cell cycle control K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D Clocl_2404 S-adenosylmethionine--tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Clocl_3273 preQ(0) biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Clocl_3272 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Clocl_3271 organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Clocl_1989 hypothetical protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Clocl_0706 hypothetical protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Clocl_4033 uncharacterized Fe-S protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Clocl_1216 hypothetical protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Clocl_2403 tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D Clocl_1440 thiazole biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Clocl_0125 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Clocl_3840 universal bacterial protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Clocl_0675 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Clocl_3841 ATPase, YjeE family K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Clocl_1557 dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D Clocl_2286 putative nucleotidyltransferase K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
D Clocl_1197 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Clocl_1386 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:ccl03012]
D Clocl_2453 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D Clocl_3033 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D Clocl_0535 ATPase component of ABC transporters with duplicated ATPase domain K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D Clocl_2466 translation elongation factor Ts K02357 tsf; elongation factor Ts
D Clocl_0661 translation elongation factor TU K02358 tuf; elongation factor Tu
D Clocl_0541 translation elongation factor EF-G K02355 fusA; elongation factor G
D Clocl_0660 translation elongation factor EF-G K02355 fusA; elongation factor G
D Clocl_0285 bacterial peptide chain release factor 1 (bRF-1) K02835 prfA; peptide chain release factor 1
D Clocl_2464 ribosome recycling factor K02838 frr; ribosome recycling factor
D Clocl_0064 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Clocl_0324 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D Clocl_3871 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D Clocl_1363 translation elongation factor P (EF-P) K02356 efp; elongation factor P
D Clocl_3089 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D Clocl_1302 bacterial peptide chain release factor 3 (bRF-3) K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:ccl03110]
D Clocl_3023 ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D Clocl_0376 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D Clocl_0547 ATPase with chaperone activity, ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D Clocl_3127 ATPase with chaperone activity, ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D Clocl_0672 endopeptidase Clp ATP-binding regulatory subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D Clocl_2593 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG
D Clocl_2768 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Clocl_2905 molecular chaperone K04045 hscC; molecular chaperone HscC
D Clocl_1820 molecular chaperone K04045 hscC; molecular chaperone HscC
D Clocl_3918 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Clocl_2767 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Clocl_0375 DnaJ-class molecular chaperone with C-terminal Zn finger domain K05516 cbpA; curved DNA-binding protein
D Clocl_0503 disulfide bond chaperone K04083 hslO; molecular chaperone Hsp33
D Clocl_2769 molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE
D Clocl_0396 molecular chaperone (small heat shock protein) K13993 HSP20; HSP20 family protein
D Clocl_3919 Co-chaperonin GroES K04078 groES; chaperonin GroES
D Clocl_1890 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107]
D Clocl_2254 trypsin-like serine protease with C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107]
D Clocl_3845 ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Clocl_0127 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Clocl_0295 F0F1-type ATP synthase, alpha subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Clocl_0983 hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D Clocl_0984 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D Clocl_1293 subtilisin-like serine protease K13277 epr; minor extracellular protease Epr [EC:3.4.21.-]
D Clocl_1087 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D Clocl_0366 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D Clocl_0326 PPIC-type PPIASE family protein K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D Clocl_1826 parvulin-like peptidyl-prolyl isomerase K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D Clocl_1865 parvulin-like peptidyl-prolyl isomerase K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D Clocl_1872 parvulin-like peptidyl-prolyl isomerase K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D Clocl_3125 parvulin-like peptidyl-prolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D Clocl_3096 thioredoxin K03671 TXN; thioredoxin
D Clocl_2873 Glutaredoxin-like protein, YruB-family K03676 grxC; glutaredoxin 3
C 04131 Membrane trafficking [BR:ccl04131]
D Clocl_1843 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Clocl_1152 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Clocl_1090 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Clocl_2593 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:ccl03051]
D Clocl_2593 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:ccl03032]
D Clocl_1464 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Clocl_3294 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Clocl_0330 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Clocl_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Clocl_0124 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Clocl_0057 DNA replication protein K02315 dnaC; DNA replication protein DnaC
D Clocl_0245 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Clocl_0178 hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101]
D Clocl_2119 DNA primase, catalytic core K02316 dnaG; DNA primase [EC:2.7.7.101]
D Clocl_4133 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Clocl_2233 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Clocl_1903 DNA polymerase III, alpha chain K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Clocl_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Clocl_2537 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Clocl_4028 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Clocl_0137 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Clocl_1813 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Clocl_2645 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Clocl_2532 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Clocl_3211 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Clocl_4221 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Clocl_0006 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Clocl_3212 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Clocl_1972 DNA topoisomerase I, bacterial K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Clocl_4153 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:ccl03036]
D Clocl_2375 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Clocl_3294 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Clocl_0330 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Clocl_0375 DnaJ-class molecular chaperone with C-terminal Zn finger domain K05516 cbpA; curved DNA-binding protein
D Clocl_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Clocl_1745 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Clocl_2652 chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D Clocl_1486 hypothetical protein K05896 scpA; segregation and condensation protein A
D Clocl_1487 segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D Clocl_2188 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D Clocl_0334 septum formation initiator K05589 ftsB; cell division protein FtsB
D Clocl_0496 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Clocl_1402 DNA segregation ATPase, FtsK/SpoIIIE family K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Clocl_2081 DNA segregation ATPase, FtsK/SpoIIIE family K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Clocl_0860 DNA segregation ATPase, FtsK/SpoIIIE family K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Clocl_2426 Cell division protein FtsL K03586 ftsL; cell division protein FtsL
D Clocl_2190 cell division septal protein K03589 ftsQ; cell division protein FtsQ
D Clocl_2421 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D Clocl_0497 cell division protein K09811 ftsX; cell division transport system permease protein
D Clocl_2187 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Clocl_4005 hypothetical protein K09888 zapA; cell division protein ZapA
D Clocl_0527 N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_1228 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_1668 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_2534 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_2508 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_1116 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D Clocl_1117 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D Clocl_1118 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D Clocl_2013 DivIVA domain protein K04074 divIVA; cell division initiation protein
D Clocl_2016 hypothetical protein K09772 sepF; cell division inhibitor SepF
D Clocl_1112 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Clocl_0314 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Clocl_1113 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D Clocl_1114 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D Clocl_2429 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D Clocl_0007 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D Clocl_0008 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Clocl_4222 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Clocl_4224 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Clocl_4223 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Clocl_1971 tRNA:m(5)U-54 methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D Clocl_1797 site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD
D Clocl_1467 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D Clocl_0268 site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD
D Clocl_3973 protein involved in cell division K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D Clocl_2548 ribosome biogenesis GTP-binding protein YsxC/EngB K03978 engB; GTP-binding protein
D Clocl_1137 hypothetical protein K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:ccl03400]
D Clocl_3771 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Clocl_3983 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D Clocl_2251 endonuclease III, DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Clocl_3240 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D Clocl_1314 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Clocl_0989 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Clocl_4002 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Clocl_3269 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Clocl_3270 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Clocl_1091 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Clocl_1360 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D Clocl_1239 putative exonuclease, RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Clocl_2786 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Clocl_2532 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Clocl_2645 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Clocl_3128 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D Clocl_3129 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D Clocl_0668 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D Clocl_3940 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Clocl_0472 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Clocl_1237 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Clocl_0655 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Clocl_0656 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Clocl_3866 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Clocl_2758 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Clocl_0325 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Clocl_1742 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Clocl_0975 mismatch repair ATPase (MutS family) K03555 mutS; DNA mismatch repair protein MutS
D Clocl_2506 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D Clocl_1743 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Clocl_2063 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Clocl_2062 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Clocl_2233 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Clocl_1903 DNA polymerase III, alpha chain K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Clocl_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Clocl_2537 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Clocl_4028 DNA polymerase III, delta'' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Clocl_0137 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Clocl_4133 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Clocl_0134 helicase, putative, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Clocl_0924 helicase, putative, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Clocl_1452 protein RecA K03553 recA; recombination protein RecA
D Clocl_1225 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Clocl_1226 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Clocl_1224 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Clocl_2574 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Clocl_2386 Rad50 zinc hook motif protein K03546 sbcC; DNA repair protein SbcC/Rad50
D Clocl_0042 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D Clocl_2387 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D Clocl_0564 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D Clocl_0004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D Clocl_2931 putative transcriptional regulator with HTH domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Clocl_2245 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Clocl_0280 putative transcriptional regulator with HTH domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Clocl_3921 putative transcriptional regulator with HTH domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Clocl_1436 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Clocl_0139 DNA replication and repair protein RecR K06187 recR; recombination protein RecR
D Clocl_2035 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Clocl_3382 recombination helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D Clocl_3383 DNA helicase/exodeoxyribonuclease V, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Clocl_2166 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D Clocl_0619 putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D Clocl_0270 superfamily II helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
D Clocl_3211 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Clocl_4221 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Clocl_0006 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Clocl_3212 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Clocl_1972 DNA topoisomerase I, bacterial K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Clocl_3294 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Clocl_0330 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Clocl_2222 nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Clocl_2265 nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Clocl_1746 SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Clocl_4060 SOS response transcriptional repressor, RecA-mediated autopeptidase K01356 lexA; repressor LexA [EC:3.4.21.88]
D Clocl_1665 hypothetical protein K03565 recX; regulatory protein
D Clocl_3262 ribonucleoside-diphosphate reductase class II K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Clocl_2451 exopolyphosphatase-like enzyme K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:ccl03029]
D Clocl_2453 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D Clocl_3033 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D Clocl_2466 translation elongation factor Ts K02357 tsf; elongation factor Ts
D Clocl_0661 translation elongation factor TU K02358 tuf; elongation factor Tu
D Clocl_0541 translation elongation factor EF-G K02355 fusA; elongation factor G
D Clocl_0660 translation elongation factor EF-G K02355 fusA; elongation factor G
D Clocl_1434 GTP-binding protein Era K03595 era; GTPase
D Clocl_1835 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Clocl_1028 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Clocl_2779 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Clocl_2756 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Clocl_0626 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Clocl_2526 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Clocl_2525 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Clocl_2527 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Clocl_2996 hypothetical protein K23499 RMND1; required for meiotic nuclear division protein 1
D Clocl_4133 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Clocl_2768 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Clocl_2769 molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE
D Clocl_3918 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Clocl_3919 Co-chaperonin GroES K04078 groES; chaperonin GroES
D Clocl_2767 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Clocl_1838 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Clocl_1439 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Clocl_4227 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Clocl_2593 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:ccl02000]
D Clocl_3342 ABC-type multidrug transport system, ATPase and permease component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Clocl_0803 ABC-type multidrug transport system, ATPase and permease component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Clocl_0361 ABC-type multidrug transport system, ATPase and permease component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Clocl_0804 ABC-type multidrug transport system, ATPase and permease component K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Clocl_0360 ABC-type multidrug transport system, ATPase and permease component K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Clocl_3341 ABC-type multidrug transport system, ATPase and permease component K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Clocl_3322 ABC-type multidrug transport system, ATPase and permease component K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Clocl_2089 ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Clocl_3387 ABC-type bacteriocin transporter K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D Clocl_2413 ATPase component of ABC transporters with duplicated ATPase domain K18231 msr; macrolide transport system ATP-binding/permease protein
D Clocl_0513 sulfate/thiosulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Clocl_0514 sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Clocl_0515 sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D Clocl_0516 sulfate ABC transporter, ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Clocl_1299 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Clocl_1300 molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D Clocl_1301 ABC-type sulfate/molybdate transport systems, ATPase component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Clocl_1898 spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D Clocl_1899 ABC-type spermidine/putrescine transport system, permease component II K11070 potC; spermidine/putrescine transport system permease protein
D Clocl_1900 ABC-type spermidine/putrescine transport system, permease component I K11071 potB; spermidine/putrescine transport system permease protein
D Clocl_1901 spermidine/putrescine ABC transporter ATP-binding subunit K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D Clocl_2142 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D Clocl_0807 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D Clocl_2707 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D Clocl_1584 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D Clocl_2705 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Clocl_1042 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Clocl_0808 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Clocl_2299 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Clocl_2300 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Clocl_1283 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Clocl_2135 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Clocl_2136 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Clocl_2143 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Clocl_2144 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Clocl_1583 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Clocl_2297 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Clocl_2706 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Clocl_1040 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Clocl_1582 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Clocl_0809 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Clocl_0494 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Clocl_2515 ABC-type sugar transport system, periplasmic component K10240 cebE; cellobiose transport system substrate-binding protein
D Clocl_0388 carbohydrate ABC transporter substrate-binding protein, CUT1 family K10240 cebE; cellobiose transport system substrate-binding protein
D Clocl_2514 carbohydrate ABC transporter membrane protein 1, CUT1 family K10241 cebF; cellobiose transport system permease protein
D Clocl_2513 carbohydrate ABC transporter membrane protein 2, CUT1 family K10242 cebG; cellobiose transport system permease protein
D Clocl_1244 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17318 lplA; putative aldouronate transport system substrate-binding protein
D Clocl_2087 ABC-type sugar transport system, periplasmic component K17318 lplA; putative aldouronate transport system substrate-binding protein
D Clocl_1242 ABC-type polysaccharide transport system, permease component K17319 lplB; putative aldouronate transport system permease protein
D Clocl_2086 ABC-type polysaccharide transport system, permease component K17319 lplB; putative aldouronate transport system permease protein
D Clocl_1243 carbohydrate ABC transporter membrane protein 2, CUT1 family K17320 lplC; putative aldouronate transport system permease protein
D Clocl_2085 carbohydrate ABC transporter membrane protein 2, CUT1 family K17320 lplC; putative aldouronate transport system permease protein
D Clocl_4055 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10546 chvE; putative multiple sugar transport system substrate-binding protein
D Clocl_4053 ABC-type xylose transport system, permease component K10547 gguB; putative multiple sugar transport system permease protein
D Clocl_4054 ABC-type sugar transport system, ATPase component K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Clocl_0792 ABC-type sugar transport system, ATPase component K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Clocl_2485 putative ABC-type transport system, periplasmic component/surface lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Clocl_1726 putative ABC-type transport system, periplasmic component/surface lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Clocl_1722 ABC-type uncharacterized transport system, permease component K23535 nupB; general nucleoside transport system permease protein
D Clocl_2483 ABC-type uncharacterized transport system, permease component K23535 nupB; general nucleoside transport system permease protein
D Clocl_2482 putative ABC-type transport system, permease component K23536 nupC; general nucleoside transport system permease protein
D Clocl_1721 putative ABC-type transport system, permease component K23536 nupC; general nucleoside transport system permease protein
D Clocl_2484 ATPase component of uncharacterized ABC-type transporter K23537 nupA; general nucleoside transport system ATP-binding protein
D Clocl_1723 ATPase component of uncharacterized ABC-type transporter K23537 nupA; general nucleoside transport system ATP-binding protein
D Clocl_3427 hypothetical protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Clocl_0475 transcriptional regulator K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Clocl_2510 ABC-type sugar transport system, periplasmic component K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Clocl_0790 monosaccharide ABC transporter substrate-binding protein, CUT2 family K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D Clocl_0791 permease component of ribose/xylose/arabinose/galactoside ABC-type transporters K02057 ABC.SS.P; simple sugar transport system permease protein
D Clocl_1706 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein
D Clocl_1707 phosphate ABC transporter membrane protein 1, PhoT family K02037 pstC; phosphate transport system permease protein
D Clocl_1708 phosphate ABC transporter membrane protein 2, PhoT family K02038 pstA; phosphate transport system permease protein
D Clocl_1709 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Clocl_2275 amino acid ABC transporter substrate-binding protein, PAAT family K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D Clocl_2274 amino acid ABC transporter membrane protein, PAAT family K17077 artQ; arginine/lysine/histidine transport system permease protein
D Clocl_2273 amino acid ABC transporter ATP-binding protein, PAAT family K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D Clocl_2727 ABC-type metal ion transport system, periplasmic component/surface antigen K02073 metQ; D-methionine transport system substrate-binding protein
D Clocl_3783 ABC-type metal ion transport system, periplasmic component/surface antigen K02073 metQ; D-methionine transport system substrate-binding protein
D Clocl_3784 ABC-type metal ion transport system, permease component K02072 metI; D-methionine transport system permease protein
D Clocl_2725 ABC-type metal ion transport system, permease component K02072 metI; D-methionine transport system permease protein
D Clocl_3785 ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein
D Clocl_2726 ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein
D Clocl_3774 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Clocl_3767 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Clocl_1772 periplasmic component of amino acid ABC-type transporter/signal transduction system K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Clocl_3766 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein
D Clocl_3777 amino acid ABC transporter membrane protein 1, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein
D Clocl_3776 amino acid ABC transporter membrane protein 2, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein
D Clocl_3775 amino acid ABC transporter ATP-binding protein, PAAT family K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Clocl_3765 amino acid ABC transporter ATP-binding protein, PAAT family K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Clocl_0722 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Clocl_0871 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Clocl_0524 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Clocl_0875 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15581 oppB; oligopeptide transport system permease protein
D Clocl_0874 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K15582 oppC; oligopeptide transport system permease protein
D Clocl_0873 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D Clocl_0872 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D Clocl_2148 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Clocl_3577 ABC-type Fe3+-hydroxamate transport system, periplasmic component K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D Clocl_3576 ABC-type Fe3+-siderophore transport system, permease component K02015 ABC.FEV.P; iron complex transport system permease protein
D Clocl_4123 ABC-type Fe3+-hydroxamate transport system, periplasmic component K25034 btuF; cobalamin transport system substrate-binding protein
D Clocl_4122 ABC-type Fe3+-siderophore transport system, permease component K25027 btuC; cobalamin transport system permease protein
D Clocl_4121 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D Clocl_0998 ABC-type metal ion transport system, periplasmic component/surface adhesin K09815 znuA; zinc transport system substrate-binding protein
D Clocl_1000 ABC-type Mn2+/Zn2+ transport system, permease component K09816 znuB; zinc transport system permease protein
D Clocl_0999 ATPase component of Mn/Zn ABC-type transporter K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Clocl_3599 cobalt transport protein K02009 cbiN; cobalt/nickel transport protein
D Clocl_3598 cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Clocl_0363 cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Clocl_3600 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D Clocl_0362 ABC-type Co2+ transport system, permease component K02007 cbiM; cobalt/nickel transport system permease protein
D Clocl_3597 cobalt transport protein ATP-binding subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Clocl_0364 ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Clocl_3225 hypothetical protein K03523 bioY; biotin transport system substrate-specific component
D Clocl_3861 ABC-type cobalt transport system, permease component CbiQ K16785 ecfT; energy-coupling factor transport system permease protein
D Clocl_3864 ABC-type cobalt transport system, ATPase component K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Clocl_3862 ABC-type cobalt transport system, ATPase component K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Clocl_0570 ABC-type Na+ efflux pump, permease component K09696 natB; sodium transport system permease protein
D Clocl_0569 ABC-type Na+ transport system, ATPase component K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D Clocl_0770 lantibiotic protection ABC transporter permease subunit, MutE/EpiE family K20491 nisE; lantibiotic transport system permease protein
D Clocl_0771 lantibiotic protection ABC transporter permease subunit, MutG family K20492 nisG; lantibiotic transport system permease protein
D Clocl_0769 gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit K20490 nisF; lantibiotic transport system ATP-binding protein
D Clocl_0640 hypothetical protein K25151 gldF; gliding motility-associated transport system permease protein
D Clocl_0639 ABC-type multidrug transport system, ATPase component K25152 gldA; gliding motility-associated transport system ATP-binding protein
D Clocl_0641 ABC-type uncharacterized transporter K25153 gldG; gliding motility-associatede transport system auxiliary component
D Clocl_0356 putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K19084 braE; bacitracin transport system permease protein
D Clocl_0357 ABC-type antimicrobial peptide transport system, ATPase component K19083 braD; bacitracin transport system ATP-binding protein
D Clocl_0497 cell division protein K09811 ftsX; cell division transport system permease protein
D Clocl_0496 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Clocl_1373 ABC-type uncharacterized transport system, permease component K25154 evrC; viologen exporter family transport system permease protein
D Clocl_1372 ABC-type uncharacterized transport system, permease component K25155 evrB; viologen exporter family transport system permease protein
D Clocl_1374 ABC-type uncharacterized transport system, ATPase component K25156 evrA; viologen exporter family transport system ATP-binding protein
D Clocl_1879 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Clocl_3319 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Clocl_1003 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Clocl_0455 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Clocl_3555 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Clocl_3853 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Clocl_3318 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Clocl_3556 daunorubicin resistance ABC transporter ATP-binding subunit K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Clocl_1002 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Clocl_1559 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Clocl_1715 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Clocl_0441 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Clocl_1880 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Clocl_0456 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Clocl_3050 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Clocl_2656 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D Clocl_3679 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D Clocl_3798 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D Clocl_3818 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D Clocl_2049 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D Clocl_3535 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D Clocl_2655 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Clocl_3678 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Clocl_3820 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Clocl_3179 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Clocl_2050 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Clocl_1276 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Clocl_3797 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Clocl_3536 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Clocl_2942 NhaP-type Na+(K+)/H+ antiporter K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2
D Clocl_1039 putative efflux protein, MATE family K26939 norM; MATE family, multidrug efflux pump
D Clocl_1769 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D Clocl_0087 Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D Clocl_1417 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D Clocl_0575 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D Clocl_2095 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D Clocl_0829 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D Clocl_0954 sugar phosphate permease K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D Clocl_0667 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Clocl_0666 phosphotransferase system HPr (HPr) family protein K02784 ptsH; phosphocarrier protein HPr
D Clocl_1138 phosphotransferase system HPr (HPr) family protein K02784 ptsH; phosphocarrier protein HPr
D Clocl_1199 HPr-related phosphotransferase system component K02784 ptsH; phosphocarrier protein HPr
D Clocl_1580 phosphotransferase system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
D Clocl_3943 ammonium transporter (TC 1.A.11) K03320 amt; ammonium transporter, Amt family
D Clocl_0048 Mg-chelatase subunit ChlD K07114 yfbK; Ca-activated chloride channel homolog
D Clocl_0049 N-terminal double-transmembrane domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D Clocl_2418 uncharacterized protein containing a von Willebrand factor type A (vWA) domain K07114 yfbK; Ca-activated chloride channel homolog
D Clocl_0047 hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog
D Clocl_0909 formate/nitrite transporter family protein K21993 fdhC; formate transporter
D Clocl_4105 small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D Clocl_3484 Mg2+ transporter MgtE K06213 mgtE; magnesium transporter
D Clocl_0061 flagellar motor component K02556 motA; chemotaxis protein MotA
D Clocl_0062 flagellar motor protein K02557 motB; chemotaxis protein MotB
D Clocl_0971 CBS domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Clocl_1871 putative effector of murein hydrolase LrgA K06518 cidA; holin-like protein
D Clocl_3220 spore germination protein, amino acid permease K06296 gerKB; spore germination protein KB
D Clocl_1456 spore germination protein, amino acid permease K06311 yndE; spore germination protein
D Clocl_0912 putative divalent heavy-metal cations transporter K07238 TC.ZIP; zinc transporter, ZIP family
D Clocl_0286 putative divalent heavy-metal cations transporter K07238 TC.ZIP; zinc transporter, ZIP family
D Clocl_3519 putative membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein
D Clocl_2867 Ca2+/Na+ antiporter K07301 yrbG; cation:H+ antiporter
D Clocl_1985 NhaP-type Na+(K+)/H+ antiporter K11105 cvrA; potassium/hydrogen antiporter
D Clocl_0340 Trk-type K+ transport system, membrane component K03498 trkH; trk/ktr system potassium uptake protein
D Clocl_0341 K+ transport system, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein
D Clocl_2863 K+ transport system, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein
D Clocl_2864 K+ transport system, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein
D Clocl_2076 uracil-xanthine permease K02824 uraA; uracil permease
D Clocl_3072 permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D Clocl_1765 chromate transport protein ChrA K07240 chrA; chromate transporter
D Clocl_1766 chromate transport protein ChrA K07240 chrA; chromate transporter
D Clocl_3552 chromate transport protein ChrA K07240 chrA; chromate transporter
D Clocl_3553 chromate transport protein ChrA K07240 chrA; chromate transporter
D Clocl_0155 arsenical-resistance protein K03325 ACR3; arsenite transporter
D Clocl_2973 arsenical-resistance protein K03325 ACR3; arsenite transporter
D Clocl_0395 stage V sporulation protein B K06409 spoVB; stage V sporulation protein B
D Clocl_3902 membrane protein involved in the export of O-antigen and teichoic acid K06409 spoVB; stage V sporulation protein B
D Clocl_0399 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Clocl_1451 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Clocl_3073 putative permease K24180 mleP; malate permease and related proteins
D Clocl_0964 putative branched-chain amino acid permease (azaleucine resistance) K26605 azlC; branched chain amino acid efflux pump
D Clocl_0963 putative membrane protein K26606 azlD; branched chain amino acid efflux pump
D Clocl_3938 putative membrane protein K22736 VIT; vacuolar iron transporter family protein
D Clocl_2421 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D Clocl_0965 inorganic pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D Clocl_1926 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Clocl_1499 pyruvate/oxaloacetate carboxyltransferase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D Clocl_1496 acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3]
D Clocl_1498 biotin carboxyl carrier protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D Clocl_2258 hypothetical protein K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
D Clocl_0603 cytochrome c biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein
D Clocl_0886 hypothetical protein K20345 blpB; membrane fusion protein, peptide pheromone/bacteriocin exporter
D Clocl_3386 hypothetical protein K20345 blpB; membrane fusion protein, peptide pheromone/bacteriocin exporter
D Clocl_0820 hypothetical protein K20345 blpB; membrane fusion protein, peptide pheromone/bacteriocin exporter
D Clocl_1005 capsular exopolysaccharide biosynthesis protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D Clocl_1006 capsular polysaccharide biosynthesis protein K19420 epsA; protein tyrosine kinase modulator
D Clocl_2833 capsular exopolysaccharide biosynthesis protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D Clocl_0752 nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D Clocl_2989 Fe2+ transport system protein A K04758 feoA; ferrous iron transport protein A
D Clocl_1246 Fe2+ transport system protein A K04758 feoA; ferrous iron transport protein A
D Clocl_2988 ferrous iron transporter FeoB K04759 feoB; ferrous iron transport protein B
D Clocl_0911 ferrous iron transporter FeoB K04759 feoB; ferrous iron transport protein B
D Clocl_0636 putative membrane protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:ccl02044]
D Clocl_0432 Flp pilus assembly protein, protease CpaA K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Clocl_2895 prepilin signal peptidase PulO-like peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Clocl_1358 prepilin signal peptidase PulO-like peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Clocl_1393 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D Clocl_1064 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D Clocl_1390 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D Clocl_1392 type II secretory pathway, component PulF K02653 pilC; type IV pilus assembly protein PilC
D Clocl_1576 Tfp pilus assembly protein, ATPase PilM K02662 pilM; type IV pilus assembly protein PilM
D Clocl_0392 Competence protein A/Cell division protein FtsA K02662 pilM; type IV pilus assembly protein PilM
D Clocl_1227 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D Clocl_1395 Tfp pilus assembly protein PilN K02663 pilN; type IV pilus assembly protein PilN
D Clocl_1391 pilus retraction protein PilT K02669 pilT; twitching motility protein PilT
D Clocl_3324 pilus retraction protein PilT K02669 pilT; twitching motility protein PilT
D Clocl_2595 Flp pilus assembly protein, protease CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D Clocl_0421 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Clocl_2853 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Clocl_3120 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Clocl_0422 hypothetical protein K12510 tadB; tight adherence protein B
D Clocl_2852 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B
D Clocl_0423 Flp pilus assembly protein TadC K12511 tadC; tight adherence protein C
D Clocl_2851 Flp pilus assembly protein TadC K12511 tadC; tight adherence protein C
D Clocl_2015 YGGT family protein K02221 yggT; YggT family protein
D Clocl_3040 competence protein ComEA-like protein with helix-hairpin-helix repeat region K02237 comEA; competence protein ComEA
D Clocl_0291 deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D Clocl_2538 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D Clocl_1866 putative hydrolase (metallo-beta-lactamase superfamily) K02238 comEC; competence protein ComEC
D Clocl_3254 Late competence development protein ComFB K02241 comFB; competence protein ComFB
D Clocl_1359 Late competence development protein ComFB K02241 comFB; competence protein ComFB
D Clocl_1946 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Clocl_1947 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Clocl_1809 uncharacterized protein, cytoplasmic domain of flagellar protein FhlB like protein K04061 flhB2; flagellar biosynthesis protein
D Clocl_1967 flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF K02409 fliF; flagellar M-ring protein FliF
D Clocl_1965 flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH
D Clocl_1964 type III secretion system ATPase, FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Clocl_1953 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Clocl_1951 flagellar biogenesis protein K02418 fliO; flagellar protein FliO/FliZ
D Clocl_1950 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Clocl_1949 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Clocl_1948 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Clocl_2606 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Clocl_2128 protein-export membrane protein, SecD/SecF family K03072 secD; preprotein translocase subunit SecD
D Clocl_0649 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Clocl_2127 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF
D Clocl_1194 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Clocl_3875 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Clocl_1759 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Clocl_2651 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Clocl_2402 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Clocl_4227 preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:ccl02042]
D Clocl_0971 CBS domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Clocl_2848 Zinc dependent phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
C 02022 Two-component system [BR:ccl02022]
D Clocl_2055 signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Clocl_1712 PAS domain S-box K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Clocl_2054 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D Clocl_1711 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D Clocl_3680 histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D Clocl_4174 signal transduction histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D Clocl_4175 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K07668 vicR; two-component system, OmpR family, response regulator VicR
D Clocl_0358 signal transduction histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D Clocl_0359 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR
D Clocl_3630 signal transduction histidine kinase K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Clocl_3631 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K18349 vanRC; two-component system, OmpR family, response regulator VanR
D Clocl_0773 histidine kinase,HAMP domain-containing protein,histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D Clocl_0772 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D Clocl_2256 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K02483 K02483; two-component system, OmpR family, response regulator
D Clocl_2240 histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D Clocl_2239 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07692 degU; two-component system, NarL family, response regulator DegU
D Clocl_3295 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D Clocl_2033 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D Clocl_3037 histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D Clocl_1349 response regulator of the LytR/AlgR family K02477 K02477; two-component system, LytTR family, response regulator
D Clocl_3569 response regulator of the LytR/AlgR family K02477 K02477; two-component system, LytTR family, response regulator
D Clocl_0571 signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Clocl_0572 signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Clocl_2031 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_1941 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_1097 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_2891 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_2764 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_2026 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_2032 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_1096 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_1952 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_0037 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Clocl_2028 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Clocl_1942 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Clocl_0386 putative signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Clocl_0387 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D Clocl_2872 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D Clocl_0781 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D Clocl_3944 response regulator with putative antiterminator output domain K22010 pdtaR; two-component system, response regulator PdtaR
D Clocl_1260 response regulator with putative antiterminator output domain K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins [BR:ccl02035]
D Clocl_2031 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_1941 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_1097 chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Clocl_2030 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_1102 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_0973 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_1940 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_2635 chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D Clocl_1147 putative inhibitor of MCP methylation, CheC K03409 cheX; chemotaxis protein CheX
D Clocl_2162 putative inhibitor of MCP methylation, CheC K03409 cheX; chemotaxis protein CheX
D Clocl_1939 chemotaxis protein CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC
D Clocl_1938 chemotaxis protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D Clocl_1842 methylase of chemotaxis methyl-accepting protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Clocl_2029 methylase of chemotaxis methyl-accepting protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Clocl_0037 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Clocl_2028 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Clocl_1942 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Clocl_2891 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_2764 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_2026 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_2032 response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_1096 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_1952 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Clocl_0763 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_0764 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_0974 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1821 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3354 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_4050 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_2879 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3398 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3402 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3487 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_3509 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1324 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1548 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1549 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1779 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D Clocl_1965 flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH
D Clocl_1964 type III secretion system ATPase, FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Clocl_1963 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D Clocl_1951 flagellar biogenesis protein K02418 fliO; flagellar protein FliO/FliZ
D Clocl_1950 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Clocl_1949 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Clocl_1948 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Clocl_1946 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Clocl_1947 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Clocl_1966 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Clocl_1954 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Clocl_1953 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D Clocl_1967 flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF K02409 fliF; flagellar M-ring protein FliF
D Clocl_1968 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D Clocl_1960 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D Clocl_1970 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Clocl_1969 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D Clocl_1959 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Clocl_0315 flagellar hook-basal body protein K02391 flgF; flagellar basal-body rod protein FlgF
D Clocl_0316 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D Clocl_0317 Rod binding protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D Clocl_1957 flagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE
D Clocl_4099 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Clocl_4100 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Clocl_4098 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D Clocl_4092 flagellin/flagellar hook associated protein K02406 fliC; flagellin
D Clocl_4093 flagellin/flagellar hook associated protein K02406 fliC; flagellin
D Clocl_4094 flagellin/flagellar hook associated protein K02406 fliC; flagellin
D Clocl_4075 flagellar capping protein K02407 fliD; flagellar hook-associated protein 2
D Clocl_4074 flagellar biosynthetic protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Clocl_1936 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D Clocl_0061 flagellar motor component K02556 motA; chemotaxis protein MotA
D Clocl_0062 flagellar motor protein K02557 motB; chemotaxis protein MotB
D Clocl_4096 hypothetical protein K13626 fliW; flagellar assembly factor FliW
D Clocl_4102 flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D Clocl_4076 flagellar protein FlaG K06603 flaG; flagellar protein FlaG
D Clocl_1956 uncharacterized protein, possibly involved in motility K02385 flbD; flagellar protein FlbD
D Clocl_1945 flagellar biosynthetic protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D Clocl_1944 ATPase involved in chromosome partitioning K04562 flhG; flagellar biosynthesis protein FlhG
D Clocl_1391 pilus retraction protein PilT K02669 pilT; twitching motility protein PilT
D Clocl_3324 pilus retraction protein PilT K02669 pilT; twitching motility protein PilT
D Clocl_1393 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D Clocl_1064 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D Clocl_1390 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D Clocl_1392 type II secretory pathway, component PulF K02653 pilC; type IV pilus assembly protein PilC
D Clocl_0432 Flp pilus assembly protein, protease CpaA K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Clocl_2895 prepilin signal peptidase PulO-like peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Clocl_1358 prepilin signal peptidase PulO-like peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Clocl_1395 Tfp pilus assembly protein PilN K02663 pilN; type IV pilus assembly protein PilN
D Clocl_1576 Tfp pilus assembly protein, ATPase PilM K02662 pilM; type IV pilus assembly protein PilM
D Clocl_0392 Competence protein A/Cell division protein FtsA K02662 pilM; type IV pilus assembly protein PilM
D Clocl_1227 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D Clocl_2595 Flp pilus assembly protein, protease CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D Clocl_0421 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Clocl_2853 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Clocl_3120 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins [BR:ccl03037]
D Clocl_2942 NhaP-type Na+(K+)/H+ antiporter K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2
C 04812 Cytoskeleton proteins [BR:ccl04812]
D Clocl_2985 uncharacterized protein, PH0010 family K06990 MEMO1; MEMO1 family protein
D Clocl_1112 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Clocl_0314 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Clocl_0241 actin-like ATPase involved in cell division K18640 parM; plasmid segregation protein ParM
D Clocl_0174 actin-like ATPase involved in cell division K18640 parM; plasmid segregation protein ParM
D Clocl_2966 actin-like ATPase involved in cell division K18640 parM; plasmid segregation protein ParM
D Clocl_2187 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Clocl_2188 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D Clocl_1116 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D Clocl_1117 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D Clocl_1118 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D Clocl_0007 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D Clocl_0008 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Clocl_4222 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:ccl04147]
D Clocl_2593 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG
D Clocl_1193 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Clocl_1152 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Clocl_1153 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Clocl_1090 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Clocl_1805 Zn-dependent dipeptidase, microsomal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D Clocl_1058 peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D Clocl_3918 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Clocl_2768 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Clocl_1322 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Clocl_2156 IMP dehydrogenase/GMP reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Clocl_0661 translation elongation factor TU K02358 tuf; elongation factor Tu
D Clocl_2837 HIT family hydrolase, diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Clocl_3325 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Clocl_1449 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Clocl_3390 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_3396 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_3969 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_1858 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_1719 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Clocl_3011 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Clocl_3874 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D Clocl_2785 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Clocl_1222 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Clocl_1223 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Clocl_3394 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Clocl_3945 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Clocl_1346 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Clocl_1787 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Clocl_3587 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Clocl_3331 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Clocl_3067 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Clocl_1154 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:ccl02048]
D Clocl_2166 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D Clocl_2165 CRISPR-associated protein, Cas2 family K09951 cas2; CRISPR-associated protein Cas2
D Clocl_2618 CRISPR-associated helicase, Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D Clocl_2176 CRISPR-associated helicase, Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D Clocl_2621 CRISPR-associated protein Cas8a1/Cst1, subtype I-B/TNEAP K19088 cst1; CRISPR-associated protein Cst1
D Clocl_2620 CRISPR-associated autoregulator, Cst2 family K19075 cst2; CRISPR-associated protein Cst2
D Clocl_2164 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Clocl_2617 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Clocl_2619 CRISPR-associated protein, Cas5t family K19090 cas5t; CRISPR-associated protein Cas5t
D Clocl_2179 CRISPR-associated protein, Csh1 family K19114 csh1; CRISPR-associated protein Csh1
D Clocl_2178 CRISPR-associated protein, Csh2 family K19115 csh2; CRISPR-associated protein Csh2
D Clocl_2177 CRISPR-associated protein, Cas5h family K19116 cas5h; CRISPR-associated protein Cas5h
D Clocl_2172 RAMP superfamily protein K19134 csx10; CRISPR-associated protein Csx10
D Clocl_0191 helicase, type I site-specific restriction-modification system restriction subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Clocl_3622 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Clocl_1698 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Clocl_0190 restriction endonuclease S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Clocl_3623 restriction endonuclease S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Clocl_0481 restriction endonuclease S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Clocl_1696 restriction endonuclease S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Clocl_0189 type I restriction-modification system methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Clocl_3627 restriction endonuclease S subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Clocl_3625 type I restriction-modification system methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Clocl_0477 type I restriction system adenine methylase HsdM K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Clocl_1695 type I restriction-modification system methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Clocl_0377 DNA modification methylase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D Clocl_1912 restriction endonuclease K01156 res; type III restriction enzyme [EC:3.1.21.5]
D Clocl_1913 adenine specific DNA methylase Mod K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D Clocl_3640 adenine specific DNA methylase Mod K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D Clocl_3947 adenine specific DNA methylase Mod K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D Clocl_2936 putative restriction endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D Clocl_3601 restriction endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D Clocl_3730 restriction endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D Clocl_0186 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D Clocl_3762 GTPase subunit of restriction endonuclease K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D Clocl_3761 McrBC 5-methylcytosine restriction system component K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D Clocl_2322 protein of unknown function (DUF1813) K19048 symE; toxic protein SymE
D Clocl_0408 growth inhibitor K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D Clocl_0407 putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
D Clocl_1093 putative stress-responsive transcriptional regulator K03973 pspC; phage shock protein C
D Clocl_4010 putative stress-responsive transcriptional regulator K03973 pspC; phage shock protein C
D Clocl_2187 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Clocl_1112 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Clocl_0314 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Clocl_0943 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Clocl_1838 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Clocl_1439 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:ccl01504]
D Clocl_3970 small GTP-binding protein domain protein K18220 tetM; ribosomal protection tetracycline resistance protein
D Clocl_2413 ATPase component of ABC transporters with duplicated ATPase domain K18231 msr; macrolide transport system ATP-binding/permease protein
D Clocl_3433 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_1896 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_3512 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_3654 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_3534 antirepressor regulating drug resistance protein K02172 blaR1; bla regulator protein blaR1
D Clocl_1895 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_3655 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_2025 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_0904 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_3533 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_3432 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocl_2991 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Clocl_0587 beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Clocl_1780 putative vancomycin resistance protein K18346 vanW; vancomycin resistance protein VanW
D Clocl_2787 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D Clocl_3630 signal transduction histidine kinase K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Clocl_3631 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain K18349 vanRC; two-component system, OmpR family, response regulator VanR
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:ccl00537]
D Clocl_1805 Zn-dependent dipeptidase, microsomal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:ccl03100]
D Clocl_2558 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Clocl_3267 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Clocl_4219 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Clocl_0059 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Clocl_0084 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Clocl_0385 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Clocl_1234 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Clocl_3444 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Clocl_2116 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Clocl_3264 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Clocl_2267 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Clocl_0505 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Clocl_3286 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Clocl_0508 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Clocl_2741 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Clocl_1296 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Clocl_3965 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Clocl_2754 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Clocl_3287 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Clocl_0380 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Clocl_1130 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Clocl_1233 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Clocl_3976 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Clocl_0507 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Clocl_1129 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Clocl_1295 tRNA-His K14226 tRNA-His; tRNA His
D Clocl_3905 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Clocl_1325 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Clocl_2410 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Clocl_1907 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Clocl_0336 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Clocl_1674 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Clocl_1297 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Clocl_3966 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Clocl_3288 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Clocl_1906 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Clocl_1680 tRNA-Met K14230 tRNA-Met; tRNA Met
D Clocl_2115 tRNA-Met K14230 tRNA-Met; tRNA Met
D Clocl_0337 tRNA-Met K14230 tRNA-Met; tRNA Met
D Clocl_0379 tRNA-Met K14230 tRNA-Met; tRNA Met
D Clocl_0506 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Clocl_1679 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Clocl_4125 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Clocl_1663 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Clocl_3837 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Clocl_4164 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Clocl_0012 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Clocl_0013 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Clocl_0086 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Clocl_4119 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Clocl_3975 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Clocl_3007 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Clocl_3285 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Clocl_1462 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Clocl_1678 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Clocl_3284 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Clocl_2868 tRNA-Val K14237 tRNA-Val; tRNA Val
D Clocl_0381 tRNA-Val K14237 tRNA-Val; tRNA Val
D Clocl_4120 tRNA-Val K14237 tRNA-Val; tRNA Val
D Clocl_0504 tRNA-Val K14237 tRNA-Val; tRNA Val
D Clocl_4220 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_2270 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3316 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3268 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3901 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3906 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Clocl_3900 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_3266 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_3904 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_2269 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_4218 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_3315 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Clocl_2268 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_3265 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_4217 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_3903 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_3899 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_3314 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Clocl_0136 Bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D Clocl_2109 Bacterial RNase P class A K01978 rnpB; M1 RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D Clocl_2157 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K16216 yueD; benzil reductase ((S)-benzoin forming) [EC:1.1.1.320]
D Clocl_2653 4-hydroxythreonine-4-phosphate dehydrogenase K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]
D Clocl_0928 Fe-dependent oxidoreductase, alcohol dehydrogenase K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-]
D Clocl_1733 indolepyruvate ferredoxin oxidoreductase, alpha subunit K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D Clocl_1734 indolepyruvate ferredoxin oxidoreductase, beta subunit K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D Clocl_0868 alkyl hydroperoxide reductase, F subunit K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D Clocl_3391 methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D Clocl_0755 Mn-containing catalase K07217 ydbD; manganese catalase [EC:1.11.1.6]
D Clocl_0867 peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D Clocl_0877 peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D Clocl_1311 ferredoxin K17992 hndB; NADP-reducing hydrogenase subunit HndB [EC:1.12.1.3]
D Clocl_1309 NADH:ubiquinone oxidoreductase 24 kD subunit K18330 hndA; NADP-reducing hydrogenase subunit HndA [EC:1.12.1.3]
D Clocl_1312 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K18331 hndC; NADP-reducing hydrogenase subunit HndC [EC:1.12.1.3]
D Clocl_1313 hydrogenase, Fe-only K18332 hndD; NADP-reducing hydrogenase subunit HndD [EC:1.12.1.3]
D Clocl_3414 ferritin-like protein K02217 ftnA; ferritin [EC:1.16.3.2]
D Clocl_0080 2-polyprenylphenol hydroxylase-like oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D Clocl_0227 protein-tyrosine-phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D Clocl_0156 protein-tyrosine-phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D Clocl_2972 protein-tyrosine-phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D Clocl_0721 anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D Clocl_1998 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Clocl_2984 pyruvate-formate lyase-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Clocl_0908 pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Clocl_1929 pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Clocl_3111 pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Clocl_1724 glycine radical enzyme activase, YjjW family K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Clocl_3298 putative N6-adenine-specific DNA methylase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
D Clocl_3153 Fe-S oxidoreductase K22704 hpnR; hopanoid C-3 methylase [EC:2.1.1.-]
D Clocl_3154 Fe-S oxidoreductase K22704 hpnR; hopanoid C-3 methylase [EC:2.1.1.-]
D Clocl_0400 acyltransferase family protein K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D Clocl_0476 acetyltransferase, N-acetylglutamate synthase K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D Clocl_3024 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D Clocl_0994 hypothetical protein K00686 tgl; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D Clocl_4155 transglutaminase-like enzyme, predicted cysteine protease K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D Clocl_1327 putative glycosylase K18785 mp2; beta-1,4-mannooligosaccharide/beta-1,4-mannosyl-N-acetylglucosamine phosphorylase [EC:2.4.1.319 2.4.1.320]
D Clocl_0412 polysaccharide pyruvyl transferase CsaB K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-]
D Clocl_3086 NCAIR mutase-like protein K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D Clocl_2431 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D Clocl_3549 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D Clocl_2577 membrane-associated lipoprotein involved in thiamine biosynthesis K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D Clocl_3152 Reverse transcriptase (RNA-dependent DNA polymerase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Clocl_3161 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Clocl_3615 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Clocl_3649 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Clocl_3651 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Clocl_3691 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Clocl_0184 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Clocl_0891 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Clocl_1692 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Clocl_0565 putative nucleic-acid-binding protein (contains the HHH domain) K07067 disA; diadenylate cyclase [EC:2.7.7.85]
D Clocl_2983 TIGR00159 family protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D Clocl_1140 anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1]
D Clocl_1131 Hpr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D Clocl_0546 arginine kinase K19405 mcsB; protein arginine kinase [EC:2.7.14.1]
D Clocl_3971 putative phosphatase, C-terminal domain of histone macro H2A1 like protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D Clocl_0762 putative esterase K03930 estA; putative tributyrin esterase [EC:3.1.1.-]
D Clocl_0128 putative thioesterase K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29]
D Clocl_2228 acyl-CoA thioester hydrolase, YbgC/YbaW family K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Clocl_3447 stage II sporulation protein E K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16]
D Clocl_0382 stage II sporulation protein E K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16]
D Clocl_1004 capsular polysaccharide biosynthesis protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D Clocl_2835 capsular polysaccharide biosynthesis protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D Clocl_0680 putative metal-dependent phosphoesterase, PHP family K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D Clocl_1355 HAD phosphatase subfamily IIIA K07015 yqeG; putative phosphatase [EC:3.1.3.-]
D Clocl_0122 putative signaling protein consisting of a modified GGDEF domain and a DHH domain protein K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59]
D Clocl_1432 putative domain HDIG-containing protein K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-]
D Clocl_0798 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Clocl_4019 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Clocl_2194 beta-1,4-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D Clocl_2441 beta-1,4-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D Clocl_0282 beta-1,4-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D Clocl_2083 beta-1,4-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D Clocl_3103 CBM6-containing protein,glycosyl hydrolase family 11 K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D Clocl_0045 beta-1,4-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D Clocl_1811 beta-glucanase/beta-glucan synthetase K01216 bglS; licheninase [EC:3.2.1.73]
D Clocl_4012 arabinogalactan endo-1,4-beta-galactosidase K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89]
D Clocl_1869 beta-xylosidase K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99]
D Clocl_1795 O-glycosyl hydrolase K15924 xynC; glucuronoarabinoxylan endo-1,4-beta-xylanase [EC:3.2.1.136]
D Clocl_2746 O-glycosyl hydrolase K15924 xynC; glucuronoarabinoxylan endo-1,4-beta-xylanase [EC:3.2.1.136]
D Clocl_0930 alpha-glucuronidase K01235 aguA; alpha-glucuronidase [EC:3.2.1.139]
D Clocl_0906 BNR/Asp-box repeat protein K18578 CEL74A; xyloglucan-specific exo-beta-1,4-glucanase [EC:3.2.1.155]
D Clocl_3660 LysM domain-containing protein K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_0630 putative S-layer protein K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_3701 LysM domain-containing protein K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Clocl_2573 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Clocl_2580 putative xylanase/chitin deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Clocl_4159 putative xylanase/chitin deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Clocl_1428 putative xylanase/chitin deacetylase K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-]
D Clocl_4080 putative LmbE-like protein K22135 bshB2; N-acetylglucosamine malate deacetylase 2 [EC:3.5.1.-]
D Clocl_3235 putative translation initiation inhibitor, yjgF family K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D Clocl_0588 endoribonuclease L-PSP, putative K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D Clocl_0052 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Clocl_4157 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Clocl_0444 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Clocl_0556 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Clocl_1034 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Clocl_1448 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Clocl_1474 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Clocl_0288 protein-tyrosine-phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2]
D Clocl_0591 UV-damage endonuclease K13281 uvsE; UV DNA damage endonuclease [EC:3.-.-.-]
D Clocl_0405 yjeF-like protein, hydroxyethylthiazole kinase-related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D Clocl_4161 CBM6-containing protein,dockerin-like protein K18197 yesW; rhamnogalacturonan endolyase [EC:4.2.2.23]
D Clocl_2731 TIGR00268 family protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D Clocl_3085 TIGR00299 family protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D Clocl_3274 CoA-substrate-specific enzyme activase, putative K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D Clocl_4056 cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D Clocl_0067 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D Clocl_0066 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D Clocl_0071 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D Clocl_0638 sarco/endoplasmic reticulum calcium-translocating P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D Clocl_0369 plasma-membrane calcium-translocating P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D Clocl_3242 heavy metal-translocating P-type ATPase, Cd/Co/Hg/Pb/Zn-transporting K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D Clocl_3694 heavy metal-translocating P-type ATPase, Cd/Co/Hg/Pb/Zn-transporting K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D Clocl_2906 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
D Clocl_1862 endoglucanase-like protein K20628 exlX; expansin
D Clocl_1298 endoglucanase-like protein K20628 exlX; expansin
C 99982 Energy metabolism
D Clocl_0068 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D Clocl_0069 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D Clocl_0070 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D Clocl_1837 FeS cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins
D Clocl_3565 iron-sulfur cluster biosynthesis protein, NifU-like protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D Clocl_2307 nitrogenase cofactor biosynthesis protein NifB K02585 nifB; nitrogen fixation protein NifB
D Clocl_1266 nitrogenase molybdenum-iron cofactor biosynthesis protein NifE K02587 nifE; nitrogenase molybdenum-cofactor synthesis protein NifE
D Clocl_0977 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit K14086 echA; ech hydrogenase subunit A
D Clocl_0978 formate hydrogenlyase subunit 4 K14087 echB; ech hydrogenase subunit B
D Clocl_0979 Ni,Fe-hydrogenase III small subunit K14088 echC; ech hydrogenase subunit C
D Clocl_0980 NADH:ubiquinone oxidoreductase 27 kD subunit K14089 echD; ech hydrogenase subunit D
D Clocl_0981 Ni,Fe-hydrogenase III large subunit K14090 echE; ech hydrogenase subunit E
D Clocl_0982 NADH:ubiquinone oxidoreductase chain I-like protein K14091 echF; ech hydrogenase subunit F
D Clocl_2976 hypothetical protein K02574 napH; ferredoxin-type protein NapH
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D Clocl_2017 pyridoxal phosphate enzyme, YggS family K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D Clocl_4205 Cell Wall Hydrolase K01449 cwlJ; cell wall hydrolase
D Clocl_0997 copper amine oxidase family protein K01449 cwlJ; cell wall hydrolase
C 99987 Cofactor metabolism
D Clocl_0368 putative unusual protein kinase K03688 ubiB; ubiquinone biosynthesis protein
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D Clocl_0502 cold shock protein K03704 cspA; cold shock protein
D Clocl_0956 cold shock protein K03704 cspA; cold shock protein
D Clocl_1262 nitrogen regulatory protein PII K02589 nifHD1; nitrogen regulatory protein PII 1
D Clocl_1263 nitrogen regulatory protein PII K02590 nifHD2; nitrogen regulatory protein PII 2
D Clocl_0596 transcriptional accessory protein K06959 tex; protein Tex
D Clocl_2760 hypothetical protein K09777 remA; extracellular matrix regulatory protein A
D Clocl_0005 hypothetical protein K24648 remB; extracellular matrix regulatory protein B
C 99974 Translation
D Clocl_0335 putative RNA-binding protein with ribosomal protein S1 domain K07571 K07571; S1 RNA binding domain protein
D Clocl_1686 putative exonuclease of the beta-lactamase fold involved in RNA processing K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D Clocl_3022 hypothetical protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D Clocl_0545 uncharacterized protein with conserved CXXC pairs K19411 mcsA; protein arginine kinase activator
D Clocl_0670 trigger factor K03545 tig; trigger factor
D Clocl_0682 SsrA-binding protein K03664 smpB; SsrA-binding protein
D Clocl_0986 hydrogenase assembly chaperone HypC/HupF K04653 hypC; hydrogenase expression/formation protein HypC
D Clocl_0987 hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D Clocl_0988 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D Clocl_1443 hydrogenase maturation factor K04655 hypE; hydrogenase expression/formation protein HypE
D Clocl_0985 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D Clocl_1974 Mg chelatase-related protein K07391 comM; magnesium chelatase family protein
D Clocl_1109 negative regulator of genetic competence, sporulation and motility K16511 mecA1_2; adapter protein MecA 1/2
C 99976 Replication and repair
D Clocl_2737 hypothetical protein K06993 K06993; ribonuclease H-related protein
D Clocl_1807 DNA repair protein radc K03630 radC; DNA repair protein RadC
D Clocl_2583 putative endonuclease III-like protein K07457 K07457; endonuclease III related protein
D Clocl_1808 putative endonuclease related to Holliday junction resolvase K07460 yraN; putative endonuclease
D Clocl_1973 DNA protecting protein DprA K04096 smf; DNA processing protein
D Clocl_1737 AAA ATPase K07478 ycaJ; putative ATPase
D Clocl_1510 phage/plasmid primase, P4 family, C-terminal domain protein K06919 K06919; putative DNA primase/helicase
D Clocl_3034 transposase, IS30 family K07482 K07482; transposase, IS30 family
D Clocl_2742 transposase, IS30 family K07482 K07482; transposase, IS30 family
D Clocl_3081 transposase, IS30 family K07482 K07482; transposase, IS30 family
D Clocl_2632 transposase, IS30 family K07482 K07482; transposase, IS30 family
D Clocl_3510 transposase, IS30 family K07482 K07482; transposase, IS30 family
D Clocl_2586 transposase, IS30 family K07482 K07482; transposase, IS30 family
D Clocl_0342 transposase, IS30 family K07482 K07482; transposase, IS30 family
D Clocl_0802 transposase, IS30 family K07482 K07482; transposase, IS30 family
D Clocl_0509 transposase, IS30 family K07482 K07482; transposase, IS30 family
D Clocl_0559 transposase, IS30 family K07482 K07482; transposase, IS30 family
D Clocl_1626 transposase, IS30 family K07482 K07482; transposase, IS30 family
D Clocl_1817 transposase, IS30 family K07482 K07482; transposase, IS30 family
D Clocl_1478 transposase, IS30 family K07482 K07482; transposase, IS30 family
D Clocl_3190 transposase K07483 K07483; transposase
D Clocl_2614 transposase K07483 K07483; transposase
D Clocl_3687 transposase K07483 K07483; transposase
D Clocl_3808 transposase K07483 K07483; transposase
D Clocl_0903 transposase K07483 K07483; transposase
D Clocl_0531 transposase K07483 K07483; transposase
D Clocl_0537 transposase K07483 K07483; transposase
D Clocl_0704 transposase K07483 K07483; transposase
D Clocl_1624 transposase K07483 K07483; transposase
D Clocl_2502 transposase K07483 K07483; transposase
D Clocl_1923 transposase K07483 K07483; transposase
D Clocl_3165 transposase K07484 K07484; transposase
D Clocl_3172 transposase K07484 K07484; transposase
D Clocl_3173 transposase K07484 K07484; transposase
D Clocl_3203 transposase K07484 K07484; transposase
D Clocl_2696 transposase K07484 K07484; transposase
D Clocl_2340 transposase K07484 K07484; transposase
D Clocl_2349 transposase K07484 K07484; transposase
D Clocl_2350 transposase K07484 K07484; transposase
D Clocl_1528 transposase K07484 K07484; transposase
D Clocl_1546 transposase K07484 K07484; transposase
D Clocl_0345 transposase K07484 K07484; transposase
D Clocl_0895 transposase K07484 K07484; transposase
D Clocl_1412 transposase K07484 K07484; transposase
D Clocl_1413 transposase K07484 K07484; transposase
D Clocl_1604 transposase K07484 K07484; transposase
D Clocl_1605 transposase K07484 K07484; transposase
D Clocl_1619 transposase K07484 K07484; transposase
D Clocl_1640 transposase K07484 K07484; transposase
D Clocl_1505 transposase K07484 K07484; transposase
D Clocl_1506 transposase K07484 K07484; transposase
D Clocl_1517 transposase K07484 K07484; transposase
D Clocl_2313 transposase K07484 K07484; transposase
D Clocl_2316 transposase K07484 K07484; transposase
D Clocl_2328 transposase K07484 K07484; transposase
D Clocl_2329 transposase K07484 K07484; transposase
D Clocl_2331 transposase K07484 K07484; transposase
D Clocl_2332 transposase K07484 K07484; transposase
D Clocl_2683 transposase K07484 K07484; transposase
D Clocl_2687 transposase K07484 K07484; transposase
D Clocl_2688 transposase K07484 K07484; transposase
D Clocl_2695 transposase K07484 K07484; transposase
D Clocl_3399 transposase K07486 K07486; transposase
D Clocl_2959 transposase K07486 K07486; transposase
D Clocl_3237 transposase K07486 K07486; transposase
D Clocl_2744 transposase K07486 K07486; transposase
D Clocl_2622 transposase K07486 K07486; transposase
D Clocl_3513 transposase K07486 K07486; transposase
D Clocl_3806 transposase K07486 K07486; transposase
D Clocl_1335 transposase K07486 K07486; transposase
D Clocl_1571 transposase K07486 K07486; transposase
D Clocl_1961 transposase K07486 K07486; transposase
D Clocl_0688 transposase K07486 K07486; transposase
D Clocl_4188 transposase K07486 K07486; transposase
D Clocl_3550 transposase K07486 K07486; transposase
D Clocl_2103 transposase K07486 K07486; transposase
D Clocl_1290 transposase K07486 K07486; transposase
D Clocl_2850 transposase K07486 K07486; transposase
D Clocl_2648 transposase K07486 K07486; transposase
D Clocl_2680 transposase K07491 rayT; REP-associated tyrosine transposase
D Clocl_3389 transposase K07491 rayT; REP-associated tyrosine transposase
D Clocl_4112 transposase K07491 rayT; REP-associated tyrosine transposase
D Clocl_3075 transposase K07491 rayT; REP-associated tyrosine transposase
D Clocl_2788 transposase K07491 rayT; REP-associated tyrosine transposase
D Clocl_0338 transposase K07491 rayT; REP-associated tyrosine transposase
D Clocl_1195 transposase K07491 rayT; REP-associated tyrosine transposase
D Clocl_1702 transposase K07491 rayT; REP-associated tyrosine transposase
D Clocl_2321 transposase K07491 rayT; REP-associated tyrosine transposase
D Clocl_0869 transposase K07491 rayT; REP-associated tyrosine transposase
D Clocl_3175 transposase K07493 K07493; putative transposase
D Clocl_2699 transposase K07493 K07493; putative transposase
D Clocl_2962 transposase K07493 K07493; putative transposase
D Clocl_2964 transposase K07493 K07493; putative transposase
D Clocl_2743 transposase K07493 K07493; putative transposase
D Clocl_3044 transposase K07493 K07493; putative transposase
D Clocl_3052 transposase K07493 K07493; putative transposase
D Clocl_2531 transposase K07493 K07493; putative transposase
D Clocl_3794 transposase K07493 K07493; putative transposase
D Clocl_2415 transposase K07493 K07493; putative transposase
D Clocl_2603 transposase K07493 K07493; putative transposase
D Clocl_0343 transposase K07493 K07493; putative transposase
D Clocl_0825 transposase K07493 K07493; putative transposase
D Clocl_0449 transposase K07493 K07493; putative transposase
D Clocl_0484 transposase K07493 K07493; putative transposase
D Clocl_0941 transposase K07493 K07493; putative transposase
D Clocl_0714 transposase K07493 K07493; putative transposase
D Clocl_1183 transposase K07493 K07493; putative transposase
D Clocl_1616 transposase K07493 K07493; putative transposase
D Clocl_2235 transposase K07493 K07493; putative transposase
D Clocl_3852 transposase K07493 K07493; putative transposase
D Clocl_2495 transposase K07493 K07493; putative transposase
D Clocl_2823 transposase K07493 K07493; putative transposase
D Clocl_3779 transposase K07493 K07493; putative transposase
D Clocl_1272 transposase K07493 K07493; putative transposase
D Clocl_2311 transposase K07493 K07493; putative transposase
D Clocl_3646 transposase K07497 K07497; putative transposase
D Clocl_0344 Transposase K07497 K07497; putative transposase
D Clocl_0896 Transposase K07497 K07497; putative transposase
D Clocl_0902 transposase K07497 K07497; putative transposase
D Clocl_0538 transposase K07497 K07497; putative transposase
D Clocl_1620 Transposase K07497 K07497; putative transposase
D Clocl_1625 transposase K07497 K07497; putative transposase
D Clocl_1639 Transposase K07497 K07497; putative transposase
D Clocl_2501 transposase K07497 K07497; putative transposase
D Clocl_1516 Transposase K07497 K07497; putative transposase
D Clocl_1922 transposase K07497 K07497; putative transposase
D Clocl_2333 Transposase K07497 K07497; putative transposase
D Clocl_0705 transposase K07497 K07497; putative transposase
D Clocl_3164 Transposase K07497 K07497; putative transposase
D Clocl_3191 transposase K07497 K07497; putative transposase
D Clocl_3647 transposase K07497 K07497; putative transposase
D Clocl_3809 transposase K07497 K07497; putative transposase
D Clocl_1547 Transposase K07497 K07497; putative transposase
D Clocl_1411 Transposase K07497 K07497; putative transposase
D Clocl_2673 transposase K07497 K07497; putative transposase
D Clocl_2684 Transposase K07497 K07497; putative transposase
D Clocl_3171 transposase K07498 K07498; putative transposase
D Clocl_1642 transposase K07498 K07498; putative transposase
C 99979 Viral proteins
C 99998 Others
D Clocl_0039 phage shock protein A (IM30), suppresses sigma54-dependent transcription K03969 pspA; phage shock protein A
D Clocl_0138 DNA-binding protein, YbaB/EbfC family K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D Clocl_3367 phosphate/sulfate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family
C 99978 Cell growth
D Clocl_0022 pro-sigmaK processing inhibitor BofA K06317 bofA; inhibitor of the pro-sigma K processing machinery
D Clocl_1382 hypothetical protein K06333 cotJB; spore coat protein JB
D Clocl_1381 Mn-containing catalase K06334 cotJC; spore coat protein JC
D Clocl_4226 putative RNA-binding protein K06346 jag; spoIIIJ-associated protein
D Clocl_4022 putative membrane protein required for spore maturation K06373 spmA; spore maturation protein A
D Clocl_4021 putative membrane protein K06374 spmB; spore maturation protein B
D Clocl_4109 anti-anti-sigma factor K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist)
D Clocl_1139 anti-sigma F factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist)
D Clocl_1466 stage II sporulation protein M K06384 spoIIM; stage II sporulation protein M
D Clocl_2775 stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P
D Clocl_0635 stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R
D Clocl_2075 stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA
D Clocl_2074 stage III sporulation protein AB K06391 spoIIIAB; stage III sporulation protein AB
D Clocl_2073 stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC
D Clocl_2072 stage III sporulation protein AD K06393 spoIIIAD; stage III sporulation protein AD
D Clocl_2071 stage III sporulation protein AE K06394 spoIIIAE; stage III sporulation protein AE
D Clocl_2070 stage III sporulation protein AF K06395 spoIIIAF; stage III sporulation protein AF
D Clocl_2069 hypothetical protein K06396 spoIIIAG; stage III sporulation protein AG
D Clocl_2068 hypothetical protein K06397 spoIIIAH; stage III sporulation protein AH
D Clocl_2516 stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A
D Clocl_3656 site-specific recombinase, DNA invertase Pin K06400 spoIVCA; site-specific DNA recombinase
D Clocl_3658 site-specific recombinase, DNA invertase Pin K06400 spoIVCA; site-specific DNA recombinase
D Clocl_2213 site-specific recombinase, DNA invertase Pin K06400 spoIVCA; site-specific DNA recombinase
D Clocl_3542 site-specific recombinase, DNA invertase Pin K06400 spoIVCA; site-specific DNA recombinase
D Clocl_3697 site-specific recombinase, DNA invertase Pin K06400 spoIVCA; site-specific DNA recombinase
D Clocl_3699 site-specific recombinase, DNA invertase Pin K06400 spoIVCA; site-specific DNA recombinase
D Clocl_2277 site-specific recombinase, DNA invertase Pin K06400 spoIVCA; site-specific DNA recombinase
D Clocl_1142 stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC
D Clocl_1143 stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD
D Clocl_1144 stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE
D Clocl_1145 hypothetical protein K06407 spoVAE; stage V sporulation protein AE
D Clocl_1388 glutamyl-tRNA reductase K06410 spoVFA; dipicolinate synthase subunit A
D Clocl_1389 dipicolinic acid synthetase, B subunit K06411 spoVFB; dipicolinate synthase subunit B
D Clocl_0321 uncharacterized protein, involved in the regulation of septum location K06412 spoVG; stage V sporulation protein G
D Clocl_3014 hypothetical protein K06415 spoVR; stage V sporulation protein R
D Clocl_1408 hypothetical protein K06416 spoVS; stage V sporulation protein S
D Clocl_2372 hypothetical protein K06416 spoVS; stage V sporulation protein S
D Clocl_4086 spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase K07257 spsF; spore coat polysaccharide biosynthesis protein SpsF
D Clocl_1321 small, acid-soluble spore protein, alpha/beta type K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP)
D Clocl_2861 small, acid-soluble spore protein, alpha/beta type K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP)
D Clocl_4204 small, acid-soluble spore protein, alpha/beta type K06423 sspF; small acid-soluble spore protein F (minor alpha/beta-type SASP)
D Clocl_2998 small acid-soluble spore protein, H-type K06425 sspH; small acid-soluble spore protein H (minor)
D Clocl_0030 sporulation peptidase YabG K06436 yabG; spore coat assemly protein
D Clocl_4154 sporulation peptidase YabG K06436 yabG; spore coat assemly protein
D Clocl_1430 sporulation protein YqfD K06438 yqfD; similar to stage IV sporulation protein
D Clocl_1455 spore germination protein, GerA family K06295 gerKA; spore germination protein KA
D Clocl_3223 spore germination protein, GerA family K06295 gerKA; spore germination protein KA
D Clocl_3222 germination protein, Ger(X)C family K06297 gerKC; spore germination protein KC
D Clocl_1457 germination protein, Ger(X)C family K06297 gerKC; spore germination protein KC
D Clocl_1230 spore germination protein K06298 gerM; germination protein M
D Clocl_0611 sporulation/spore germination protein K06298 gerM; germination protein M
D Clocl_0055 germination protein YpeB K06313 ypeB; spore germination protein
C 99993 Cell motility
D Clocl_0949 TfoX C-terminal domain-containing protein K07343 tfoX; DNA transformation protein and related proteins
C 99995 Signaling proteins
D Clocl_2468 GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D Clocl_1368 ACT domain-containing protein K07166 K07166; ACT domain-containing protein
D Clocl_1431 phosphate starvation-inducible protein PhoH, predicted ATPase K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D Clocl_2289 PhoH family protein K07175 phoH2; PhoH-like ATPase
D Clocl_3016 putative Ser protein kinase K07180 prkA; serine protein kinase
C 99992 Structural proteins
D Clocl_3819 multidrug resistance efflux pump K02005 ABC.CD.TX; HlyD family secretion protein
D Clocl_2654 multidrug resistance efflux pump K02005 ABC.CD.TX; HlyD family secretion protein
C 99994 Others
D Clocl_1710 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein
D Clocl_1279 hemerythrin-like metal-binding domain-containing protein K07216 hr; hemerythrin
D Clocl_4014 hemerythrin-like metal-binding domain-containing protein K07216 hr; hemerythrin
D Clocl_3497 hypothetical protein K26996 sdpI; immunity protein, SdpI family
B
B 09194 Poorly characterized
C 99996 General function prediction only
D Clocl_1132 PHP family phosphohydrolase, histidinol phosphatase K04477 ycdX; putative hydrolase
D Clocl_2893 putative esterase of the alpha-beta hydrolase superfamily K07001 K07001; NTE family protein
D Clocl_3276 putative membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein
D Clocl_4131 putative membrane protein K07058 K07058; membrane protein
D Clocl_2924 hypothetical protein K04750 phnB; PhnB protein
D Clocl_3495 X-X-X-Leu-X-X-Gly heptad repeat-containing protein K01421 yhgE; putative membrane protein
D Clocl_4138 putative membrane protein K08974 K08974; putative membrane protein
C 99997 Function unknown
D Clocl_1657 radical SAM additional 4Fe4S-binding domain protein K06871 K06871; uncharacterized protein
D Clocl_2130 six-Cys-in-45 modification radical SAM protein K06871 K06871; uncharacterized protein
D Clocl_2897 beta-propeller domain-containing protein, methanol dehydrogenase K06872 K06872; uncharacterized protein
D Clocl_3238 thioredoxin domain protein K06888 K06888; uncharacterized protein
D Clocl_1878 lysophospholipase K06889 K06889; uncharacterized protein
D Clocl_2309 prolyl oligopeptidase family protein K06889 K06889; uncharacterized protein
D Clocl_4069 alpha/beta hydrolase family protein K06889 K06889; uncharacterized protein
D Clocl_4013 FtsH-interacting integral membrane protein K06890 K06890; uncharacterized protein
D Clocl_1075 putative ATPase (AAA+ superfamily) K06923 K06923; uncharacterized protein
D Clocl_3996 putative CoA-binding protein K06929 K06929; uncharacterized protein
D Clocl_0171 putative DNA-binding protein K06933 K06933; uncharacterized protein
D Clocl_3566 putative DNA-binding protein K06933 K06933; uncharacterized protein
D Clocl_3345 putative Fe-S oxidoreductase K06940 K06940; uncharacterized protein
D Clocl_3436 putative membrane protein K06950 K06950; uncharacterized protein
D Clocl_1761 putative RNA-binding protein (contains KH domain) K06960 K06960; uncharacterized protein
D Clocl_2478 membrane complex biogenesis protein, BtpA family K06971 K06971; uncharacterized protein
D Clocl_2570 putative Zn-dependent protease K06973 K06973; uncharacterized protein
D Clocl_3494 putative RND superfamily exporter K07003 K07003; uncharacterized protein
D Clocl_0140 putative flavin-nucleotide-binding protein K07005 K07005; uncharacterized protein
D Clocl_2259 putative TIM-barrel fold metal-dependent hydrolase K07045 K07045; uncharacterized protein
D Clocl_3574 putative TIM-barrel fold metal-dependent hydrolase K07045 K07045; uncharacterized protein
D Clocl_4038 putative TIM-barrel fold metal-dependent hydrolase K07045 K07045; uncharacterized protein
D Clocl_0774 putative nucleotidyltransferase K07074 K07074; uncharacterized protein
D Clocl_0939 nitroreductase-like oxidoreductase K07078 K07078; uncharacterized protein
D Clocl_3849 putative oxidoreductase of aldo/keto reductase family K07079 K07079; uncharacterized protein
D Clocl_1718 putative oxidoreductase of aldo/keto reductase family K07079 K07079; uncharacterized protein
D Clocl_0229 putative permease K07089 K07089; uncharacterized protein
D Clocl_0157 putative permease K07089 K07089; uncharacterized protein
D Clocl_2971 putative permease K07089 K07089; uncharacterized protein
D Clocl_3020 putative permease K07090 K07090; uncharacterized protein
D Clocl_3021 putative permease K07090 K07090; uncharacterized protein
D Clocl_4044 phosphoesterase, MJ0936 family K07095 K07095; uncharacterized protein
D Clocl_1323 putative phosphohydrolase K07098 K07098; uncharacterized protein
D Clocl_0669 putative phosphohydrolase K07099 K07099; uncharacterized protein
D Clocl_2981 FAD-dependent dehydrogenase K07137 K07137; uncharacterized protein
D Clocl_3084 radical SAM protein, TIGR01212 family K07139 K07139; uncharacterized protein
D Clocl_1891 uncharacterized membrane protein, possible Na+ channel or pump K07150 K07150; uncharacterized protein
D Clocl_4228 hypothetical protein K08998 K08998; uncharacterized protein
D Clocl_2789 hypothetical protein K09117 K09117; uncharacterized protein
D Clocl_0679 hypothetical protein K09145 K09145; uncharacterized protein
D Clocl_1369 hypothetical protein K09157 K09157; uncharacterized protein
D Clocl_2129 HD domain-containing protein K09163 K09163; uncharacterized protein
D Clocl_2571 hypothetical protein K09729 K09729; uncharacterized protein
D Clocl_0041 putative polymerase with PALM domain, HD hydrolase domain and Zn ribbon K09749 K09749; uncharacterized protein
D Clocl_1935 putative polymerase with PALM domain, HD hydrolase domain and Zn ribbon K09749 K09749; uncharacterized protein
D Clocl_2859 putative polymerase with PALM domain, HD hydrolase domain and Zn ribbon K09749 K09749; uncharacterized protein
D Clocl_2559 hypothetical protein K09764 K09764; uncharacterized protein
D Clocl_1442 hypothetical protein K09766 K09766; uncharacterized protein
D Clocl_3323 hypothetical protein K09768 K09768; uncharacterized protein
D Clocl_4029 hypothetical protein K09770 K09770; uncharacterized protein
D Clocl_2060 hypothetical protein K09775 K09775; uncharacterized protein
D Clocl_3352 hypothetical protein K09776 K09776; uncharacterized protein
D Clocl_3990 hypothetical protein K09779 K09779; uncharacterized protein
D Clocl_3015 sporulation protein YhbH K09786 K09786; uncharacterized protein
D Clocl_1758 hypothetical protein K09787 K09787; uncharacterized protein
D Clocl_3827 hypothetical protein K09922 K09922; uncharacterized protein
D Clocl_0371 hypothetical protein K09973 K09973; uncharacterized protein
D Clocl_1151 hypothetical protein K01163 K01163; uncharacterized protein
D Clocl_1210 putative ribosomal protein K07584 ysxB; uncharacterized protein
D Clocl_3366 phosphate transport regulator related to PhoU K07220 K07220; uncharacterized protein
D Clocl_2455 putative nucleic-acid-binding protein implicated in transcription termination K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 24, 2024