+E Ribosome biogenesis KO
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Ribosome Biogenesis - Corynebacterium diphtheriae 241
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D CD241_1481 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D CD241_1742 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C CD241_1646 era; GTP-binding protein K03595 era; GTPase
C CD241_1711 obg; putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C CD241_1425 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C CD241_1267 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C CD241_0369 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D CD241_0787 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CD241_1251 hypothetical protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D CD241_1049 putative DNA methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D CD241_1651 sdrD1; ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CD241_2257 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CD241_1542 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CD241_0783 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CD241_1111 putative cytotoxin/hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D CD241_0896 rrmA; putative SAM-dependent methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D CD241_1863 SpoU rRNA methylase family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CD241_1447 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CD241_1111 putative cytotoxin/hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D CD241_2165 hypothetical protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D CD241_1126 putative pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CD241_1520 rluC; putative pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C CD241_0510 putative ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C CD241_1469 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
B rRNA processing factors
C CD241_1481 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C CD241_1714 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C CD241_1276 holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C CD241_0927 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C CD241_1646 era; GTP-binding protein K03595 era; GTPase
C CD241_0643 hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C CD241_1128 engA; GTP-binding protein EngA K03977 engA; GTPase
C CD241_1711 obg; putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C CD241_1385 hflX; putative GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C CD241_0951 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C CD241_1295 rel; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C CD241_1422 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C CD241_1426 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C CD241_0149 hypothetical protein K14761 rlbA; ribosome-associated protein
C CD241_1706 hypothetical protein K09710 ybeB; ribosome-associated protein
C CD241_1649 putative metalloprotease K07042 ybeY; probable rRNA maturation factor
C CD241_0854 GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase
C CD241_1482 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024