+E Transcription factors KO
#
Transcription Factors - Citrobacter freundii
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D CFNIH1_21005 DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CFNIH1_25295 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CFNIH1_25110 modification methylase EcoRII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CFNIH1_25585 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D CFNIH1_10030 transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D CFNIH1_07090 AraC family transcriptional regulator K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D CFNIH1_16545 transcriptional regulator K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D CFNIH1_08255 transcriptional regulator K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA
D CFNIH1_23635 transcriptional regulator EutR K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D CFNIH1_07970 transcriptional regulator K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D CFNIH1_17685 transcriptional regulator K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator
D CFNIH1_09695 transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D CFNIH1_12990 transcriptional regulator K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D CFNIH1_13200 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D CFNIH1_12895 AraC family transcriptional regulator K21746 rclR; AraC family transcriptional regulator, reactive chlorine species (RCS)-specific activator of rcl operon
D CFNIH1_21175 regulatory protein K27259 pocR; AraC family transcriptional regulator, pdu and cob operon regulator
D CFNIH1_18235 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D CFNIH1_22690 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D CFNIH1_06315 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D CFNIH1_01000 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D CFNIH1_03985 transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D CFNIH1_03725 transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D CFNIH1_09810 nhaR; transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D CFNIH1_07400 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D CFNIH1_01560 chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D CFNIH1_10090 leuO; transcriptional regulator K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D CFNIH1_24120 transcriptional regulator K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator
D CFNIH1_02845 transcriptional regulator K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator
D CFNIH1_12665 transcriptional regulator K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon
D CFNIH1_18870 cysB; CysB family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D CFNIH1_15540 cbl; transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D CFNIH1_06520 transcriptional regulator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D CFNIH1_13540 LysR family transcriptional regulator K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC
D CFNIH1_04445 LysR family transcriptional regulator K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator
D CFNIH1_19825 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D CFNIH1_17855 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D CFNIH1_08420 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D CFNIH1_18025 transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D CFNIH1_15535 nitrogen assimilation transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D CFNIH1_22110 cell density-dependent motility repressor K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D CFNIH1_05165 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D CFNIH1_03430 transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D CFNIH1_02505 LysR family transcriptional regulator K21742 ttdR; LysR family transcriptional regulator, transcriptional activator for ttdABT operon
D CFNIH1_04030 transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D CFNIH1_14325 DeoR faimly transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D CFNIH1_06485 DeoR faimly transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D CFNIH1_04755 transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D CFNIH1_02875 transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D CFNIH1_00540 srlR; transcriptional regulator K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
D CFNIH1_08585 transcriptional repressor UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D CFNIH1_06965 DeoR faimly transcriptional regulator K27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor
C LacI family
D CFNIH1_11760 lacI; lac repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D CFNIH1_05455 XylR family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CFNIH1_01145 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CFNIH1_06810 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CFNIH1_11535 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CFNIH1_22045 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CFNIH1_05375 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D CFNIH1_07285 transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D CFNIH1_10105 transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D CFNIH1_00945 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D CFNIH1_08965 treR; trehalose repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D CFNIH1_00575 transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D CFNIH1_17155 transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D CFNIH1_04825 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D CFNIH1_09095 transcriptional regulator K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D CFNIH1_17380 transcriptional regulator K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D CFNIH1_08180 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D CFNIH1_13975 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D CFNIH1_05190 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D CFNIH1_19750 fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D CFNIH1_10270 pdhR; transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D CFNIH1_17000 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D CFNIH1_09305 transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D CFNIH1_05095 GntR family transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D CFNIH1_02735 transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D CFNIH1_05635 transcriptional regulator K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator
D CFNIH1_03345 transcriptional regulator NanR K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor
D CFNIH1_00365 DeoR faimly transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D CFNIH1_22175 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D CFNIH1_17025 decarboxylase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D CFNIH1_11555 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D CFNIH1_00320 transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D CFNIH1_17620 GntR family transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
D CFNIH1_09430 GntR family transcriptional regulator K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism
C TetR/AcrR family
D CFNIH1_12475 transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D CFNIH1_05810 slmA; division inhibitor protein K05501 slmA; TetR/AcrR family transcriptional regulator
D CFNIH1_15055 transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D CFNIH1_17200 transcriptional repressor NemR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D CFNIH1_00085 TetR family transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D CFNIH1_03540 transcriptional regulator K18140 envR; TetR/AcrR family transcriptional regulator, acrEF/envCD operon repressor
D CFNIH1_19500 TetR family transcriptional regulator K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA
D CFNIH1_15650 TetR family transcriptional regulator K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D CFNIH1_07410 transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D CFNIH1_14100 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D CFNIH1_14355 DeoR faimly transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D CFNIH1_06760 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D CFNIH1_14485 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CFNIH1_18585 DNA-binding protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CFNIH1_12370 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D CFNIH1_20805 LuxR family transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D CFNIH1_20970 rcsA; capsule biosynthesis protein CapA K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D CFNIH1_15200 transcriptional regulator K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D CFNIH1_09520 transcriptional regulator K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D CFNIH1_12920 LuxR family transcriptional regulator K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D CFNIH1_04750 transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D CFNIH1_17690 transcriptional regulator K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR
D CFNIH1_17235 transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D CFNIH1_09380 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D CFNIH1_00425 transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D CFNIH1_00725 transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D CFNIH1_18535 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D CFNIH1_26125 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D CFNIH1_26100 transcriptional regulator MerD K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D CFNIH1_12580 transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D CFNIH1_04135 zntR; zinc-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D CFNIH1_07975 transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D CFNIH1_21890 MerR family transcriptional regulator K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
D CFNIH1_15820 MerR family transcriptional regulator K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
D CFNIH1_19615 transcriptional regulator K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes
C Fur family
D CFNIH1_13545 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CFNIH1_07900 zinc uptake transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D CFNIH1_07680 transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D CFNIH1_11825 transcriptional regulator K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator
D CFNIH1_12675 transcriptional regulator K10973 allR; IclR family transcriptional regulator, negative regulator of allantoin and glyoxylate utilization operons
D CFNIH1_19955 transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D CFNIH1_05485 transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
C CRP/FNR family
D CFNIH1_04525 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CFNIH1_03965 CarD family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CFNIH1_18485 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D CFNIH1_11135 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D CFNIH1_20325 transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D CFNIH1_24035 transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D CFNIH1_08550 transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D CFNIH1_20290 arsenic resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D CFNIH1_07735 arsenite transporter K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D CFNIH1_18225 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D CFNIH1_14195 manganese transport regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D CFNIH1_20425 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D CFNIH1_07465 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CFNIH1_03525 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D CFNIH1_09680 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D CFNIH1_11720 propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D CFNIH1_11260 Nlp family transcriptional regulator K07724 ner; Ner family transcriptional regulator
D CFNIH1_26265 Ner K07724 ner; Ner family transcriptional regulator
D CFNIH1_03190 transcriptional regulator K07724 ner; Ner family transcriptional regulator
D CFNIH1_02120 DNA-binding protein K07724 ner; Ner family transcriptional regulator
D CFNIH1_10055 transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator
D CFNIH1_09665 transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D CFNIH1_11615 transcriptional regulator K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D CFNIH1_20305 transcriptional regulator K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor
D CFNIH1_06365 transcriptional regulator K17473 dgaR; sigma-54 dependent transcriptional regulator, dga operon transcriptional activator
D CFNIH1_09450 sigma-54 dependent transcriptional regulator K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
D CFNIH1_00550 transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D CFNIH1_00665 transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator
D CFNIH1_10500 transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D CFNIH1_13925 transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D CFNIH1_05405 transcriptional regulator K07726 K07726; putative transcriptional regulator
D CFNIH1_07010 Cro/Cl family transcriptional regulator K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D CFNIH1_05015 nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D CFNIH1_07310 transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D CFNIH1_15065 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D CFNIH1_18305 hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D CFNIH1_01225 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression
D CFNIH1_12305 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D CFNIH1_16235 plasmid stablization protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CFNIH1_25245 plasmid stablization protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CFNIH1_24845 transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CFNIH1_25185 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CFNIH1_05050 transcriptional regulator K02443 glpP; glycerol uptake operon antiterminator
D CFNIH1_03665 rfaH; transcriptional regulator K05785 rfaH; transcriptional antiterminator RfaH
D CFNIH1_03400 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D CFNIH1_09010 ArgR family transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism
D CFNIH1_13485 transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D CFNIH1_17535 transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D CFNIH1_05615 mtlR; mannitol repressor protein K02562 mtlR; mannitol operon repressor
D CFNIH1_18615 transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D CFNIH1_23800 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D CFNIH1_18720 pspF; phage shock protein K03974 pspF; psp operon transcriptional activator
D CFNIH1_18705 transcriptional regulator K03973 pspC; phage shock protein C
D CFNIH1_02635 transcriptional regulator K05880 dhaR; transcriptional activator for dhaKLM operon
D CFNIH1_13210 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D CFNIH1_09185 Rha family transcriptional regulator K07733 alpA; prophage regulatory protein
D CFNIH1_02035 Rha family transcriptional regulator K07733 alpA; prophage regulatory protein
D CFNIH1_01715 hypothetical protein K07735 algH; putative transcriptional regulator
D CFNIH1_09880 transcriptional regulator K08277 caiF; transcriptional activator CaiF
D CFNIH1_14690 conjugal transfer protein TraR K06204 dksA; RNA polymerase-binding transcription factor
D CFNIH1_26190 conjugal transfer protein TraR K06204 dksA; RNA polymerase-binding transcription factor
D CFNIH1_10415 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
D CFNIH1_12160 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D CFNIH1_11115 transcriptional regulator K11926 crl; sigma factor-binding protein Crl
D CFNIH1_22495 cell division protein K22302 dicC; transcriptional repressor of cell division inhibition gene dicB
D CFNIH1_10110 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
D CFNIH1_12830 fimbriae Y protein K08088 fimY; fimbrial regulator
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 5, 2024
#
Classification taken and modified from TRANSFAC 7.0