+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Ciona intestinalis (yellow sea squirt)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        100177272 LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        100181952 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        100177395 DNA-directed RNA polymerase II subunit RPB3-like	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        113475769 DNA-directed RNA polymerase II subunit RPB3-like	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        100181341 DNA-directed RNA polymerase II subunit RPB11-a isoform X2	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        100182759 DNA-directed RNA polymerase II subunit RPB4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        100177778 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
D      Pol I, II, III common subunits
E        100182874 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100181417 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        100178283 DNA-directed RNA polymerases I, II, and III subunit RPABC3-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        101242260 DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        100179515 TFIIA-alpha and beta-like factor isoform X1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        104266385 transcription initiation factor IIA subunit 2-like	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        100182343 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        100177214 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100186355 TATA-box-binding protein-like isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100180928 transcription initiation factor TFIID subunit 1-like isoform X1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        100186812 transcription initiation factor TFIID subunit 2-like	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        100175083 transcription initiation factor TFIID subunit 3	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        100175488 transcription initiation factor TFIID subunit 4-like isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        100184951 transcription initiation factor TFIID subunit 5-like	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        100182611 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        100176743 TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        100186362 transcription initiation factor TFIID subunit 6 isoform X1	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        113475097 transcription initiation factor TFIID subunit 7-like isoform X1	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        100185111 transcription initiation factor TFIID subunit 8-like	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        100177176 transcription initiation factor TFIID subunit 9B-like	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        100184379 transcription initiation factor TFIID subunit 10-like isoform X1	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        100181502 transcription initiation factor TFIID subunit 12-like	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        100179955 transcription initiation factor TFIID subunit 13-like	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        100175005 general transcription factor IIE subunit 1-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        100180599 general transcription factor IIE subunit 2-like	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        100186440 general transcription factor IIF subunit 1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        100179943 general transcription factor IIF subunit 2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        100176629 general transcription factor IIH subunit 1-like	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        778950 zf(c2h2)-114; zinc finger protein	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        100184165 general transcription factor IIH subunit 3-like	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        100187369 general transcription factor IIH subunit 4	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        100183594 general transcription and DNA repair factor IIH helicase subunit XPB	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        100177945 general transcription and DNA repair factor IIH helicase subunit XPD-like	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        100182642 cyclin-dependent kinase 7	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        100170063 zf(ring)-55; CDK-activating kinase assembly factor MAT1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        100177816 cyclin-H	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        100177788 mediator of RNA polymerase II transcription subunit 6-like	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        100185580 mediator of RNA polymerase II transcription subunit 8 isoform X1	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        100179706 mediator of RNA polymerase II transcription subunit 11-like	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        100178713 mediator of RNA polymerase II transcription subunit 17-like	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        100177919 mediator of RNA polymerase II transcription subunit 19-like	K15137 MED19; mediator of RNA polymerase II transcription subunit 19 
E        100180457 mediator of RNA polymerase II transcription subunit 20-like	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        100186878 mediator of RNA polymerase II transcription subunit 22-like	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        100186879 mediator of RNA polymerase II transcription subunit 28-like	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        100183333 mediator of RNA polymerase II transcription subunit 29-like	K15142 MED29; mediator of RNA polymerase II transcription subunit 29 
E        100181710 mediator of RNA polymerase II transcription subunit 30-like isoform X2	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        100182502 mediator of RNA polymerase II transcription subunit 1-like	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        100187033 mediator of RNA polymerase II transcription subunit 4-like isoform X1	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        100177424 mediator of RNA polymerase II transcription subunit 7-like	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        100179769 mediator of RNA polymerase II transcription subunit 7	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        100175933 mediator of RNA polymerase II transcription subunit 10-like	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        100177017 mediator of RNA polymerase II transcription subunit 21-like	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        100177801 mediator of RNA polymerase II transcription subunit 31-like	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        100175672 mediator of RNA polymerase II transcription subunit 14-like isoform X1	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        100176244 mediator of RNA polymerase II transcription subunit 15 isoform X1	K15157 MED15; mediator of RNA polymerase II transcription subunit 15 
E        100185858 mediator of RNA polymerase II transcription subunit 16-like	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
D      CDK-module
E        100185167 cyclin-C-like	K15161 CCNC; cyclin-C 
E        100179370 mediator of RNA polymerase II transcription subunit 12-like protein isoform X1	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        100179760 mediator of RNA polymerase II transcription subunit 13-like	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        100177856 mediator of RNA polymerase II transcription subunit 23-like isoform X1	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        108951018 mediator of RNA polymerase II transcription subunit 24-like isoform X1	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        104266193 mediator of RNA polymerase II transcription subunit 25-like	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        100183822 mediator of RNA polymerase II transcription subunit 26-like	K15169 MED26; mediator of RNA polymerase II transcription subunit 26 
E        100178193 mediator of RNA polymerase II transcription subunit 27-like	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        100176452 histone acetyltransferase KAT2A	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        100183071 histone acetyltransferase KAT2A	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        100183703 transformation/transcription domain-associated protein isoform X1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        100178595 transcriptional adapter 2-alpha	K11314 TADA2A; transcriptional adapter 2-alpha 
E        100182149 transcriptional adapter 2-beta isoform X2	K15127 TADA2B; transcriptional adapter 2-beta 
E        100181025 transcriptional adapter 3-like	K11315 TADA3; transcriptional adapter 3 
E        100180594 transcriptional adapter 1-like	K11317 TADA1; transcriptional adapter 1 
E        100186812 transcription initiation factor TFIID subunit 2-like	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        100175488 transcription initiation factor TFIID subunit 4-like isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        100184951 transcription initiation factor TFIID subunit 5-like	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        100182611 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        100176743 TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        100186362 transcription initiation factor TFIID subunit 6 isoform X1	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        113475097 transcription initiation factor TFIID subunit 7-like isoform X1	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        100177176 transcription initiation factor TFIID subunit 9B-like	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        100184379 transcription initiation factor TFIID subunit 10-like isoform X1	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        100181502 transcription initiation factor TFIID subunit 12-like	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        100178640 SAGA-associated factor 11 homolog	K11363 SGF11; SAGA-associated factor 11 
E        100187426 SAGA-associated factor 29-like	K11364 SGF29; SAGA-associated factor 29 
E        100177564 uncharacterized protein LOC100177564	K11316 SUPT7L; STAGA complex 65 subunit gamma 
E        100185476 ataxin-7-like	K11318 ATXN7; ataxin-7 
E        778583 e(y)2; transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        100175972 LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 22-like	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        100178056 splicing factor 3B subunit 3 isoform X2	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        100175060 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        100184235 SWI/SNF complex subunit SMARCC2 isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        100177871 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        100178664 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        100185398 actin-like protein 6B	K11652 ACTL6B; actin-like protein 6B 
E        100175834 AT-rich interactive domain-containing protein 1A-like isoform X1	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        100177114 AT-rich interactive domain-containing protein 2	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        780718 protein polybromo-1 isoform X1	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        100175060 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        100178426 activated RNA polymerase II transcriptional coactivator p15-like	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
C    Other transcription-related factors
D      Transcription elongation factors
E        100183293 transcription elongation factor A protein 1	K03145 TFIIS; transcription elongation factor S-II 
E        778766 spt4; SPT4 protein	K15171 SUPT4H1; transcription elongation factor SPT4 
E        100178802 transcription elongation factor SPT5 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
E        100186297 transcription elongation factor SPT6	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        100177094 transcription termination factor 2-like	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        100176007 pre-mRNA cleavage complex 2 protein Pcf11 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        751579 zf(c2h2)-55; zinc finger protein 55	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        100183655 cleavage and polyadenylation specificity factor subunit 1-like	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        100184465 cleavage and polyadenylation specificity factor subunit 3	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        100178032 cleavage and polyadenylation specificity factor subunit 4	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        100178587 serine/threonine-protein phosphatase alpha-2 isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100187079 serine/threonine-protein phosphatase alpha-2 isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100175517 serine/threonine-protein phosphatase PP1-beta catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100183988 symplekin	K06100 SYMPK; symplekin 
E        100187321 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        100177034 5'-3' exoribonuclease 2 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        100183246 decapping and exoribonuclease protein	K14845 RAI1; RAT1-interacting protein 
E        100181755 regulation of nuclear pre-mRNA domain-containing protein 1B-like	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        100184998 uncharacterized protein LOC100184998 isoform X1	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        100176840 splicing factor, arginine/serine-rich 15	K13191 RBM16; RNA-binding protein 16 
D      PAF1 complex
E        100177014 RNA polymerase II-associated factor 1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        100185462 parafibromin isoform X1	K15175 CDC73; parafibromin 
E        100175816 LOW QUALITY PROTEIN: RNA polymerase-associated protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        494392 uncharacterized protein LOC494392	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        100175277 RNA polymerase-associated protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        100183386 negative elongation factor A-like	K15179 WHSC2; negative elongation factor A 
E        100186426 negative elongation factor B	K15180 COBRA1; negative elongation factor B 
E        100183995 negative elongation factor C/D	K15181 TH1L; negative elongation factor C/D 
E        100182171 negative elongation factor E-like	K15182 RDBP; negative elongation factor E 
D      Super elongation complex (SEC)
E        100187494 RNA polymerase II elongation factor ELL isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        100178614 AF4/FMR2 family member 4 isoform X2	K15185 AFF4; AF4/FMR2 family member 4 
E        100184137 ELL-associated factor 1-like isoform X3	K15186 EAF; ELL-associated factor 
E        100180711 protein AF-9-like isoform X1	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        100182825 cyclin-T2 isoform X1	K15188 CCNT; cyclin T 
E        100181821 cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Little elongation complex (LEC)
E        100187494 RNA polymerase II elongation factor ELL isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        100183534 uncharacterized protein LOC100183534	K26144 ICE2; little elongation complex subunit 2 
D      Brd4/P-TEFb complex
E        100182825 cyclin-T2 isoform X1	K15188 CCNT; cyclin T 
E        100181821 cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        100181056 uncharacterized protein LOC100181056 isoform X1	K15189 HEXIM1_2; protein HEXIM1/2 
E        100175253 7SK snRNA methylphosphate capping enzyme-like	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        100187160 la-related protein 7-like	K15191 LARP7; La-related protein 7 
E        100182825 cyclin-T2 isoform X1	K15188 CCNT; cyclin T 
E        100181821 cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
D      Others
E        100180833 TATA-binding protein-associated factor 172	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        113474005 protein Dr1-like	K21751 DR1; down-regulator of transcription 1 
E        100186645 uncharacterized protein LOC100186645	K21752 DRAP1; Dr1-associated corepressor 
E        100180491 protein SPT2 homolog	K15193 SPTY2D1; protein SPT2 
E        100180266 RNA polymerase II subunit A C-terminal domain phosphatase-like isoform X1	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        100176815 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        100187539 protein IWS1 homolog	K17498 SPN1; transcription factor SPN1 
E        100175204 cysteine/serine-rich nuclear protein 1	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        100180092 RNA polymerase II-associated protein 1-like	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        100177812 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        113474016 RNA polymerase II-associated protein 3-like	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        101243154 cyclin-K-like isoform X1	K23326 CCNK; cyclin K 
E        100181475 GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
E        100180720 GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        100181218 GPN-loop GTPase 1	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        100185039 LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC1-like	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        100175086 DNA-directed RNA polymerase III subunit RPC2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        100178608 DNA-directed RNA polymerases I and III subunit RPAC1-like	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
D      Pol III specific subunits
E        100186818 DNA-directed RNA polymerase III subunit RPC3	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        100184400 DNA-directed RNA polymerase III subunit RPC4	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        100186418 DNA-directed RNA polymerase III subunit RPC5	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        100182884 DNA-directed RNA polymerase III subunit RPC6-like	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        100181260 DNA-directed RNA polymerase III subunit RPC7-like	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        104266855 DNA-directed RNA polymerase III subunit RPC8-like	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        445803 cgrp-rcp; calcitonin gene-related peptide receptor component protein	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        751592 polr3k; polymerase (RNA) III (DNA directed) polypeptide K	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        100182874 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100181417 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        100178283 DNA-directed RNA polymerases I, II, and III subunit RPABC3-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        101242260 DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
C    Basal transcription factors
D      TFIIIA
E        100170086 zf(c2h2)-86; spliceosome-associated protein CWC15 homolog	K09191 GTF3A; general transcription factor IIIA 
E        100169927 zf(c2h2)-138; zinc finger protein ZF(C2H2)-138	K09191 GTF3A; general transcription factor IIIA 
E        100169983 zf(c2h2)-82; zinc finger protein ZF(C2H2)-82	K09191 GTF3A; general transcription factor IIIA 
E        100169906 zf(c2h2)-145; zinc finger protein (C2H2)-145	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        100177214 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100186355 TATA-box-binding protein-like isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100183676 transcription factor IIIB 90 kDa subunit isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        100183153 transcription factor IIIB 50 kDa subunit	K15197 BRF2; transcription factor IIIB 50 kDa subunit 
E        100184128 transcription factor TFIIIB component B'' homolog	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        100181908 general transcription factor 3C polypeptide 1-like	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        108950317 general transcription factor 3C polypeptide 2-like isoform X1	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        100178427 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        100180654 uncharacterized protein LOC100180654	K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48] 
E        100184044 general transcription factor 3C polypeptide 5-like isoform X2	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        100187256 general transcription factor 3C polypeptide 6-like	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        100184044 general transcription factor 3C polypeptide 5-like isoform X2	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        100178427 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        100179778 uncharacterized protein LOC100179778 isoform X1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        100181619 snRNA-activating protein complex subunit 3	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
E        100184273 snRNA-activating protein complex subunit 4 isoform X1	K09453 SNAPC4; snRNA-activating protein complex subunit 4 
D      Octamer transcription factors
E        778732 POU domain, class 2, transcription factor 1 isoform X2	K09364 POU2F; POU domain transcription factor, class 2 
D      Others
E        100186914 zinc finger protein 76	K20828 ZNF143_76; zinc finger protein 143/76 
E        100185613 repressor of RNA polymerase III transcription MAF1 homolog isoform X1	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        100183393 DNA-directed RNA polymerase I subunit RPA2-like	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        100178608 DNA-directed RNA polymerases I and III subunit RPAC1-like	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
D      Pol I specific subunits
E        100183232 DNA-directed RNA polymerase I subunit RPA49-like	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        100187206 nucleolar and coiled-body phosphoprotein 1	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
D      Pol I, II, III common subunits
E        100182874 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100181417 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        100178283 DNA-directed RNA polymerases I, II, and III subunit RPABC3-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        101242260 DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
C    Basal transcription factors
D      SL1/TIF-1B
E        100177214 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100186355 TATA-box-binding protein-like isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100186239 TATA box-binding protein-associated factor RNA polymerase I subunit A	K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A 
E        100182709 TATA box-binding protein-associated factor RNA polymerase I subunit B	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
E        100184347 uncharacterized protein LOC100184347	K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C 
C    Other transcription-related factors
D      UBF
E        778787 ubf; transcription factor protein	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        100182246 RNA polymerase I-specific transcription initiation factor RRN3	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
D      Transcription elongation factors
E        778766 spt4; SPT4 protein	K15171 SUPT4H1; transcription elongation factor SPT4 
E        100178802 transcription elongation factor SPT5 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        778936 swi/snf; SWI/SNF protein	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
E        100186626 nucleolar and coiled-body phosphoprotein 1	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        100182343 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        100175005 general transcription factor IIE subunit 1-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: April 9, 2024