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Transfer RNA Biogenesis - Clostridium bornimense
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D CM240_0080 rnz; Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D CM240_1054 beta-lactamase superfamily hydrolase K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D CM240_0554 poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D CM240_3073 hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D CM240_2614 proS; Proline-tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CM240_0517 ileS; Isoleucine-tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CM240_0940 leuS; Leucine-tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CM240_0342 metG; Methionine-tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CM240_0760 glnS; Glutamine-tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CM240_2854 glnS; Glutamine-tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CM240_0728 argS; Arginine-tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CM240_2505 lysS; Lysine-tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CM240_2000 aspS3; Aspartate-tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D CM240_1964 alaS; Alanine-tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CM240_0357 dhha1 domain protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CM240_1185 tRNA synthetase class II (D K and N) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CM240_2583 asnS; Asparagine-tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CM240_2498 glyQS; Glycine-tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CM240_2098 thrS; Threonine-tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CM240_0020 serS; Serine-tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CM240_2474 cysS; Cysteine-tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CM240_0759 valS; Valine-tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CM240_2001 hisS; Histidine-tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CM240_2091 pheS; Phenylalanine-tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CM240_2090 pheT; Phenylalanine-tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CM240_0930 tyrS; Tyrosine-tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CM240_0919 trpS; Tryptophan-tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D CM240_2004 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D CM240_1475 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D CM240_1176 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D CM240_2418 truA2; tRNA pseudouridine synthase A 2 K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CM240_0359 truA1; tRNA pseudouridine synthase A 1 K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CM240_1700 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D CM240_1355 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CM240_1361 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CM240_1972 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D CM240_2294 ywlC; putative tRNA threonylcarbamoyladenosine biosynthesis protein YwlC K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CM240_1229 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CM240_2690 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D CM240_2689 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D CM240_2693 hypothetical protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D CM240_0080 rnz; Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D CM240_1054 beta-lactamase superfamily hydrolase K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D CM240_0554 poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
D CM240_3073 hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D CM240_0940 leuS; Leucine-tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CM240_2614 proS; Proline-tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D CM240_0930 tyrS; Tyrosine-tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CM240_0919 trpS; Tryptophan-tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CM240_2098 thrS; Threonine-tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CM240_0517 ileS; Isoleucine-tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CM240_2505 lysS; Lysine-tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CM240_1964 alaS; Alanine-tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CM240_0357 dhha1 domain protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CM240_0759 valS; Valine-tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CM240_0342 metG; Methionine-tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CM240_0020 serS; Serine-tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CM240_2000 aspS3; Aspartate-tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CM240_2474 cysS; Cysteine-tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CM240_0760 glnS; Glutamine-tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CM240_2854 glnS; Glutamine-tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CM240_0728 argS; Arginine-tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CM240_2091 pheS; Phenylalanine-tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CM240_2090 pheT; Phenylalanine-tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CM240_2001 hisS; Histidine-tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CM240_1185 tRNA synthetase class II (D K and N) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CM240_2583 asnS; Asparagine-tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CM240_0264 aspS1; Aspartate-tRNA ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D CM240_0763 gltX; Glutamate-tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
C Trans-editing factors
D CM240_2004 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D CM240_1073 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D CM240_0040 cytidine/deoxycytidylate deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D CM240_2507 dus1; putative tRNA-dihydrouridine synthase 1 K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
D CM240_1217 miaB; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D CM240_1476 mtaB; Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
C Methyltransferases
D CM240_3277 methylase involved in ubiquinone/menaquinone biosynthesis K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D CM240_1176 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D CM240_1727 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D CM240_2690 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D CM240_1567 hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D CM240_0979 tRNA/rRNA methyltransferase SpoU K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D CM240_0159 methyltransferase small K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D CM240_2092 tRNA/rRNA methyltransferase SpoU K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D CM240_2418 truA2; tRNA pseudouridine synthase A 2 K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CM240_0359 truA1; tRNA pseudouridine synthase A 1 K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CM240_1700 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D CM240_1970 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CM240_0418 ExsB family protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D CM240_1360 PP-loop domain-containing protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D CM240_2272 hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D CM240_1355 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CM240_1361 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CM240_1972 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Other tRNA modification factors
D CM240_2689 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CM240_1229 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CM240_2015 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D CM240_0235 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CM240_0232 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CM240_0233 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CM240_0236 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D CM240_3074 hypothetical protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D CM240_0968 iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D CM240_2014 tgt; Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D CM240_1354 thiI; putative tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D CM240_2512 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D CM240_2255 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D CM240_2294 ywlC; putative tRNA threonylcarbamoyladenosine biosynthesis protein YwlC K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CM240_1806 gcp; putative tRNA threonylcarbamoyladenosine biosynthesis protein Gcp K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D CM240_2254 hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D CM240_2627 HesA/MoeB/ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D CM240_1902 UPF0348 protein K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
B tRNA degradation factors
C CM240_0999 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C CM240_1697 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024