+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Carica papaya (papaya)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        110822512 DNA-directed RNA polymerase II subunit 1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        110817850 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        110806508 DNA-directed RNA polymerases II, IV and V subunit 3-like	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        110809333 DNA-directed RNA polymerases II, IV and V subunit 11	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        110823262 DNA-directed RNA polymerase II subunit 4-like	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        110806915 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        110817786 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        110812172 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        110821224 DNA-directed RNA polymerases II, IV and V subunit 9B	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        110820595 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        110822628 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        110825160 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        110821511 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        110821838 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        110818360 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        110820688 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
E        110817539 DNA-directed RNA polymerase IV subunit 1	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        110809212 DNA-directed RNA polymerase D subunit 2b	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        110823865 DNA-directed RNA polymerase V subunit 7	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
C    Basal transcription factors
D      TFIIA
E        110812147 transcription initiation factor IIA large subunit-like isoform X1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        110818874 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        110811841 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        110820521 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        110807155 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        110814981 LOW QUALITY PROTEIN: TATA-binding protein 2-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        110807314 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 1-like	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        110820341 transcription initiation factor TFIID subunit 2-like	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        110818825 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4b-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        110809399 transcription initiation factor TFIID subunit 4b-like isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        110809207 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        110820749 transcription initiation factor TFIID subunit 6b-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        110808810 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        110809508 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        110817568 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        110808757 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        110820140 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        110818627 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        110807487 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        110822782 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        110819497 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        110820863 general transcription factor IIE subunit 1-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        110820551 uncharacterized protein LOC110820551	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        110811575 general transcription factor IIE subunit 2	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        110812671 LOW QUALITY PROTEIN: transcription initiation factor IIF subunit alpha	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        110822491 general transcription factor IIF subunit 2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        110807179 probable RNA polymerase II transcription factor B subunit 1-1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        110808556 general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        110816624 RNA polymerase II transcription factor B subunit 4	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        110817799 LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 2	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        110807187 DNA repair helicase XPB1 isoform X1	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        110814710 DNA repair helicase XPD	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        110817547 RNA polymerase II transcription factor B subunit 5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        110807499 cyclin-dependent kinase D-2 isoform X1	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        110823421 cyclin-dependent kinase D-3	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        110806727 CDK-activating kinase assembly factor MAT1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        110817670 cyclin-H1-1 isoform X1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        110808866 mediator of RNA polymerase II transcription subunit 6 isoform X1	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        110808066 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        110812691 mediator of RNA polymerase II transcription subunit 17-like	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        110825869 mediator of RNA polymerase II transcription subunit 18	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        110826108 mediator of RNA polymerase II transcription subunit 20a isoform X1	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        110819945 mediator of RNA polymerase II transcription subunit 22b-like	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        110821416 mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
D      Middle
E        110811663 mediator of RNA polymerase II transcription subunit 7a-like	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        110817770 mediator of RNA polymerase II transcription subunit 10b	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        110806773 mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        110820425 mediator of RNA polymerase II transcription subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        110806619 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        110808900 cyclin-dependent kinase E-1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
D      Other mediators
E        110823743 mediator of RNA polymerase II transcription subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        110824297 mediator of RNA polymerase II transcription subunit 25	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        110816823 mediator of RNA polymerase II transcription subunit 27 isoform X1	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        110817316 mediator of RNA polymerase II transcription subunit 32	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        110819842 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 33A	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        110813877 mediator of RNA polymerase II transcription subunit 33B-like	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        110814751 histone acetyltransferase GCN5 isoform X1	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        110812856 transcriptional adapter ADA2a-like	K11314 TADA2A; transcriptional adapter 2-alpha 
E        110817728 transcriptional adapter ADA2b isoform X1	K11314 TADA2A; transcriptional adapter 2-alpha 
E        110817895 transcriptional adapter ADA2b-like	K11314 TADA2A; transcriptional adapter 2-alpha 
E        110817959 LOW QUALITY PROTEIN: transcriptional adapter ADA2b-like	K11314 TADA2A; transcriptional adapter 2-alpha 
E        110820341 transcription initiation factor TFIID subunit 2-like	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        110818825 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4b-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        110809399 transcription initiation factor TFIID subunit 4b-like isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        110809207 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        110820749 transcription initiation factor TFIID subunit 6b-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        110808810 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        110809508 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        110818627 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        110822782 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        110823573 ataxin-7-like protein 3	K11363 SGF11; SAGA-associated factor 11 
E        110810214 uncharacterized protein LOC110810214 isoform X1	K11364 SGF29; SAGA-associated factor 29 
E        110815950 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        110826129 ubiquitin carboxyl-terminal hydrolase 22-like	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        110808253 ubiquitin carboxyl-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        110823917 spliceosome-associated protein 130 A	K12830 SF3B3; splicing factor 3B subunit 3 
E        110811685 LOW QUALITY PROTEIN: uncharacterized protein LOC110811685	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        110820911 ATP-dependent helicase BRM	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        110813521 LOW QUALITY PROTEIN: SWI/SNF complex subunit SWI3C	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        110822968 SWI/SNF complex subunit SWI3A	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        110813738 SWI/SNF complex subunit SWI3D isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        110818050 LOW QUALITY PROTEIN: SWI/SNF complex subunit SWI3B	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        110807424 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        110820509 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        110820336 actin-related protein 4	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
D      RSC complex
D      Others
E        110816548 RNA polymerase II transcriptional coactivator KIWI-like	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        110819048 RNA polymerase II transcriptional coactivator KELP	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        110818427 LOW QUALITY PROTEIN: cell division cycle and apoptosis regulator protein 1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        110822537 transcription elongation factor A protein 2-like	K03145 TFIIS; transcription elongation factor S-II 
E        110819777 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110819782 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110819783 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110819784 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110819785 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110819787 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110817563 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110813289 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110817615 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110825726 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110814847 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110825542 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110811642 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        110813458 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110819788 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110819789 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110824735 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110823054 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110825151 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        110806836 transcription elongation factor SPT4 homolog 1-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        110807007 putative transcription elongation factor SPT5 homolog 1 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
E        110809869 LOW QUALITY PROTEIN: transcription elongation factor SPT6 homolog	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        110822667 polyadenylation and cleavage factor homolog 4	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        110809717 uncharacterized protein LOC110809717	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        110806734 polyadenylation and cleavage factor homolog 4 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        110823188 LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        110809608 LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        110819809 30-kDa cleavage and polyadenylation specificity factor 30-like isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        110807733 putative uncharacterized protein DDB_G0274405 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        110815386 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        110812173 serine/threonine-protein phosphatase PP1 isozyme 2	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        110806663 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        110815866 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        110807770 serine/threonine-protein phosphatase PP1 isozyme 2-like isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        110819193 serine/threonine-protein phosphatase PP1 isozyme 4	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        110825280 LOW QUALITY PROTEIN: uncharacterized protein LOC110825280	K06100 SYMPK; symplekin 
E        110813613 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        110810867 decapping nuclease DXO homolog, chloroplastic-like	K14845 RAI1; RAT1-interacting protein 
E        110812841 regulation of nuclear pre-mRNA domain-containing protein 2-like	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        110813019 regulation of nuclear pre-mRNA domain-containing protein 1B	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        110808338 regulation of nuclear pre-mRNA domain-containing protein 2-like	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        110822399 peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        110814093 protein CDC73 homolog	K15175 CDC73; parafibromin 
E        110817689 protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        110817774 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        110813390 ELL-associated factor 1	K15186 EAF; ELL-associated factor 
E        110809726 suppressor protein SRP40	K15186 EAF; ELL-associated factor 
E        110818249 cyclin-T1-5-like isoform X1	K15188 CCNT; cyclin T 
E        110815762 cyclin-T1-5-like	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        110818249 cyclin-T1-5-like isoform X1	K15188 CCNT; cyclin T 
E        110815762 cyclin-T1-5-like	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        110813788 la-related protein 6C isoform X1	K15191 LARP7; La-related protein 7 
E        110807615 la-related protein 6A	K15191 LARP7; La-related protein 7 
E        110808127 la-related protein 6B	K15191 LARP7; La-related protein 7 
E        110818249 cyclin-T1-5-like isoform X1	K15188 CCNT; cyclin T 
E        110815762 cyclin-T1-5-like	K15188 CCNT; cyclin T 
D      DBIRD complex
D      Others
E        110812839 TATA-binding protein-associated factor BTAF1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        110820458 protein Dr1 homolog isoform X1	K21751 DR1; down-regulator of transcription 1 
E        110806330 dr1-associated corepressor homolog	K21752 DRAP1; Dr1-associated corepressor 
E        110809051 uncharacterized protein LOC110809051	K15193 SPTY2D1; protein SPT2 
E        110807710 RNA polymerase II C-terminal domain phosphatase-like 2	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        110817857 RNA polymerase II C-terminal domain phosphatase-like 1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        110825105 RNA polymerase II C-terminal domain phosphatase-like 3	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        110808404 RNA polymerase II C-terminal domain phosphatase-like 3	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        110818130 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        110819367 CTD nuclear envelope phosphatase 1 homolog	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        110809368 CTD small phosphatase-like protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        110819956 protein IWS1 homolog 1-like	K17498 SPN1; transcription factor SPN1 
E        110818926 LOW QUALITY PROTEIN: transcriptional elongation regulator MINIYO	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        110815317 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        110815490 RNA polymerase II-associated protein 3	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        110808432 GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
E        110810450 LOW QUALITY PROTEIN: GPN-loop GTPase 1	K24104 GPN; GPN-loop GTPase 
E        110821599 GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        110822011 DNA-directed RNA polymerase III subunit 1 isoform X1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        110820592 DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        110810039 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        110810383 DNA-directed RNA polymerase III subunit rpc3	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        110820316 DNA-directed RNA polymerase III subunit rpc4-like	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        110826110 uncharacterized protein LOC110826110 isoform X1	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        110825753 uncharacterized protein LOC110825753	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        110816573 DNA-directed RNA polymerase III subunit RPC6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        110818377 prothymosin alpha-B-like	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        110814836 DNA-directed RNA polymerase III subunit RPC8	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        110820081 uncharacterized protein LOC110820081 isoform X1	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        110810979 DNA-directed RNA polymerase III subunit RPC10-like	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        110820595 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        110822628 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        110825160 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        110821511 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        110821838 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        110818360 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        110820688 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        110813301 transcription factor IIIA isoform X1	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        110814981 LOW QUALITY PROTEIN: TATA-binding protein 2-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        110825710 transcription factor IIIB 90 kDa subunit-like isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        110822072 plant-specific TFIIB-related protein PTF2	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
D      TFIIIC
E        110817003 uncharacterized protein LOC110817003 isoform X1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        110818845 uncharacterized protein LOC110818845	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        110808107 transcription factor tau subunit sfc1 isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        110814667 uncharacterized protein LOC110814667	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        110808107 transcription factor tau subunit sfc1 isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        110818845 uncharacterized protein LOC110818845	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        110815607 uncharacterized protein LOC110815607	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        110817761 snRNA-activating protein complex subunit isoform X1	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        110813400 repressor of RNA polymerase III transcription MAF1 homolog	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        110807536 DNA-directed RNA polymerase I subunit 2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        110820592 DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        110810039 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        110818317 DNA-directed RNA polymerase I subunit rpa49	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        110814118 DNA-directed RNA polymerase I subunit RPA12 isoform X1	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        110820595 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        110822628 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        110825160 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        110821511 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        110821838 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        110818360 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        110820688 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        110814981 LOW QUALITY PROTEIN: TATA-binding protein 2-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
E        110809432 high mobility group B protein 6-like isoform X1	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        110822056 RNA polymerase I-specific transcription initiation factor RRN3	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        110813668 neurofilament medium polypeptide isoform X1	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        110806836 transcription elongation factor SPT4 homolog 1-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        110807007 putative transcription elongation factor SPT5 homolog 1 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        110819886 ISWI chromatin-remodeling complex ATPase CHR11 isoform X1	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
E        5878374 rpoA; RNA polymerase alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        5878339 rpoB; RNA polymerase beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
E        5878449 rpoC2; RNA polymerase beta'' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        5878388 rpoC1; RNA polymerase beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
D      Sigma factors
E        110821413 RNA polymerase sigma factor sigA-like	K03086 rpoD; RNA polymerase primary sigma factor 
E        110823190 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial	K03093 sigI; RNA polymerase sigma-I factor 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        110811841 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        110820521 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        110807155 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        110820863 general transcription factor IIE subunit 1-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        110820551 uncharacterized protein LOC110820551	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
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#Last updated: April 9, 2024