+D GENES KO #

  KEGG Orthology (KO) - Candidatus Carsonella ruddii HT

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis C 00020 Citrate cycle (TCA cycle) [PATH:crt00020] D A355_0118 sucD; succinyl-CoA synthetase alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D A355_0119 sucC; succinyl-CoA synthetase beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D A355_0129 mqo; malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] C 00030 Pentose phosphate pathway [PATH:crt00030] D A355_042 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D A355_092 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D A355_013 tktB; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D A355_0137 talA; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] C 00040 Pentose and glucuronate interconversions D A355_092 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00051 Fructose and mannose metabolism C 00052 Galactose metabolism C 00053 Ascorbate and aldarate metabolism C 00500 Starch and sucrose metabolism C 00520 Amino sugar and nucleotide sugar metabolism C 00620 Pyruvate metabolism [PATH:crt00620] D A355_0129 mqo; malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D A355_094 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism D A355_031 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00640 Propanoate metabolism D A355_0119 sucC; succinyl-CoA synthetase beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D A355_0118 sucD; succinyl-CoA synthetase alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00650 Butanoate metabolism D A355_0155 ilvI; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:crt00660] D A355_0155 ilvI; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D A355_0119 sucC; succinyl-CoA synthetase beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D A355_0118 sucD; succinyl-CoA synthetase alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D A355_096 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D A355_097 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D A355_098 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:crt00190] D A355_0198 cyoD; cytochrome O ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D A355_0199 cyoC; cytochrome O ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D A355_0200 cyoB; cytochrome O ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D A355_0201 cyoA; cytochrome O ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D A355_07 atpA; F0F1-type ATP synthase alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D A355_09 atpD; F0F1-type ATP synthase beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D A355_08 atpG; F0F1-type ATP synthase gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D A355_03 atpB; F0F1-type ATP synthase A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D A355_04 atpE; F0F1-type ATP synthase C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:crt00680] D A355_031 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00910 Nitrogen metabolism C 00920 Sulfur metabolism B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis C 00062 Fatty acid elongation C 00071 Fatty acid degradation C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism C 00564 Glycerophospholipid metabolism D A355_089 cls; putative endonuclease related to cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:crt00230] D A355_014 nrdA; putative ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C 00240 Pyrimidine metabolism [PATH:crt00240] D A355_078 carB; carbamoylphosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D A355_077 carA-2; truncated carbamoylphosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D A355_014 nrdA; putative ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:crt00250] D A355_0124 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D A355_0205 argH; putative argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D A355_093 putA; delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D A355_078 carB; carbamoylphosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D A355_077 carA-2; truncated carbamoylphosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] C 00260 Glycine, serine and threonine metabolism [PATH:crt00260] D A355_0132 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D A355_099 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D A355_0148 thrA; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D A355_0147 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D A355_031 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00270 Cysteine and methionine metabolism [PATH:crt00270] D A355_025 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D A355_0132 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D A355_099 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D A355_0148 thrA; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D A355_0203 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00280 Valine, leucine and isoleucine degradation [PATH:crt00280] D A355_0203 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:crt00290] D A355_096 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D A355_097 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D A355_098 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D A355_0155 ilvI; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D A355_0153 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D A355_029 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D A355_0203 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D A355_094 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:crt00300] D A355_0148 thrA; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D A355_0132 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D A355_099 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D A355_0127 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D A355_075 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D A355_018 dapD; tetrahydrodipicolinate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D A355_0207 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D A355_0206 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00310 Lysine degradation C 00220 Arginine biosynthesis [PATH:crt00220] D A355_011 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D A355_0124 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D A355_0205 argH; putative argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] C 00330 Arginine and proline metabolism [PATH:crt00330] D A355_093 putA; delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] C 00340 Histidine metabolism D A355_068 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] C 00350 Tyrosine metabolism C 00360 Phenylalanine metabolism C 00380 Tryptophan metabolism C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:crt00400] D A355_0113 aroH; 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D A355_028 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D A355_012 aroD; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D A355_054 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D A355_095 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism C 00430 Taurine and hypotaurine metabolism C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:crt00450] D A355_025 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D A355_035 sufS; putative selenocysteine lyase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D A355_0122 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism D A355_031 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:crt00470] D A355_0207 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D A355_0206 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism D A355_042 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis C 00552 Teichoic acid biosynthesis C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism C 00740 Riboflavin metabolism C 00750 Vitamin B6 metabolism D A355_0147 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism C 00770 Pantothenate and CoA biosynthesis [PATH:crt00770] D A355_0155 ilvI; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D A355_0153 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D A355_029 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D A355_0203 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00780 Biotin metabolism C 00785 Lipoic acid metabolism C 00790 Folate biosynthesis C 00670 One carbon pool by folate [PATH:crt00670] D A355_031 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D A355_015 metF; putative 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] C 00830 Retinol metabolism C 00860 Porphyrin metabolism D A355_0120 gltX; putative glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D A355_013 tktB; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:crt00261] D A355_0132 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D A355_099 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D A355_0127 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D A355_075 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics C 00999 Biosynthesis of various plant secondary metabolites C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:crt03020] D A355_0190 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D A355_0189 rpoC; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D A355_0163 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:crt03010] D A355_055 rpsA; putative ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D A355_020 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D A355_0178 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D A355_0164 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D A355_0169 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D A355_0187 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D A355_0172 rpsH; putative ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D A355_051 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D A355_0184 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D A355_0165 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D A355_0188 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D A355_0166 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D A355_0173 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D A355_0151 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D A355_0176 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D A355_0180 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D A355_0193 rplA; putative ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D A355_0181 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D A355_0183 rplC; putative ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D A355_0182 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D A355_0174 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D A355_0171 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D A355_0191 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D A355_0194 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D A355_050 rplM; putative ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D A355_0175 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D A355_0168 rplO; putative ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D A355_0177 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D A355_0149 rplS; putative ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D A355_0107 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D A355_0161 rplU; putative ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D A355_0160 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D A355_0143 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D A355_026 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D A355_0142 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D A355_0167 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D A355_0140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D A355_0139 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D A355_0138 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:crt00970] D A355_067 trnA(TGC); tRNA-Ala K14218 tRNA-Ala; tRNA Ala D A355_085 trnR(TCT); tRNA-Arg K14219 tRNA-Arg; tRNA Arg D A355_0130 trnR(ACG); tRNA-Arg K14219 tRNA-Arg; tRNA Arg D A355_043 trnN(GTT); tRNA-Asn K14220 tRNA-Asn; tRNA Asn D A355_059 trnD(GTC); tRNA-Asp K14221 tRNA-Asp; tRNA Asp D A355_0125 trnC(GCA); tRNA-Cys K14222 tRNA-Cys; tRNA Cys D A355_070 trnQ(TTG); tRNA-Gln K14223 tRNA-Gln; tRNA Gln D A355_038 trnE(TTC); tRNA-Glu K14224 tRNA-Glu; tRNA Glu D A355_0196 trnG(TCC); tRNA-Gly K14225 tRNA-Gly; tRNA Gly D A355_039 trnG(GCC); tRNA-Gly K14225 tRNA-Gly; tRNA Gly D A355_086 trnH(GTG); tRNA-His K14226 tRNA-His; tRNA His D A355_017 trnI(GAT); tRNA-Ile K14227 tRNA-Ile; tRNA Ile D A355_079 trnL(AAG); tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A355_0126 trnL(TAA); tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A355_0101 trnL(TAG); tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A355_0128 trnK(TTT); tRNA-Lys K14229 tRNA-Lys; tRNA Lys D A355_044 trnM(CAT); tRNA-Met K14230 tRNA-Met; tRNA Met D A355_0121 trnI(CAT); tRNA-Ile K14230 tRNA-Met; tRNA Met D A355_0152 trnfM(CAT); tRNA-Met K14230 tRNA-Met; tRNA Met D A355_069 trnF(GAA); tRNA-Phe K14231 tRNA-Phe; tRNA Phe D A355_084 trnP(TGG); tRNA-Pro K14232 tRNA-Pro; tRNA Pro D A355_091 trnS(TGA); tRNA-Ser K14233 tRNA-Ser; tRNA Ser D A355_0131 trnS(GCT); tRNA-Ser K14233 tRNA-Ser; tRNA Ser D A355_040 trnS(GGA); tRNA-Ser K14233 tRNA-Ser; tRNA Ser D A355_071 trnT(TGT); tRNA-Thr K14234 tRNA-Thr; tRNA Thr D A355_0195 trnW(CCA); tRNA-Trp K14235 tRNA-Trp; tRNA Trp D A355_0197 trhY(GTA); tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D A355_058 trnV(TAC); tRNA-Val K14237 tRNA-Val; tRNA Val D A355_0120 gltX; putative glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D A355_048 gatA; aspartyl/glutamyl-tRNA amidotransferase A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D A355_047 gatB; aspartyl/glutamyl-tRNA amidotransferase B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D A355_083 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D A355_090 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D A355_0208 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D A355_0100 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D A355_0122 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D A355_0135 valS; putative valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D A355_0117 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D A355_0157 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D A355_0145 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D A355_082 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D A355_0141 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system D A355_036 trmU; putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] C 03050 Proteasome C 03018 RNA degradation [PATH:crt03018] D A355_074 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D A355_056 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] B B 09124 Replication and repair C 03030 DNA replication [PATH:crt03030] D A355_0104 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D A355_023 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D A355_062 dnaB; putative replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] C 03410 Base excision repair C 03420 Nucleotide excision repair C 03430 Mismatch repair D A355_023 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D A355_0104 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] C 03440 Homologous recombination [PATH:crt03440] D A355_0134 recA; RecA recombinase K03553 recA; recombination protein RecA D A355_023 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D A355_0104 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system B B 09132 Signal transduction C 02020 Two-component system C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing D A355_0113 aroH; 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly D A355_066 rpoD; putative RNA polymerase sigma factor rpoD K03086 rpoD; RNA polymerase primary sigma factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance C 01502 Vancomycin resistance C 01503 Cationic antimicrobial peptide (CAMP) resistance B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:crt01000] C 01001 Protein kinases C 01009 Protein phosphatases and associated proteins C 01002 Peptidases and inhibitors [BR:crt01002] D A355_019 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D A355_087 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] C 01003 Glycosyltransferases C 01005 Lipopolysaccharide biosynthesis proteins C 01011 Peptidoglycan biosynthesis and degradation proteins C 01004 Lipid biosynthesis proteins C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases C 01007 Amino acid related enzymes [BR:crt01007] D A355_0120 gltX; putative glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D A355_083 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D A355_082 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D A355_0141 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D A355_0122 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D A355_0157 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D A355_0135 valS; putative valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D A355_0117 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D A355_0145 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D A355_090 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D A355_0208 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D A355_0100 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D A355_0203 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:crt00194] D A355_09 atpD; F0F1-type ATP synthase beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D A355_08 atpG; F0F1-type ATP synthase gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D A355_07 atpA; F0F1-type ATP synthase alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D A355_04 atpE; F0F1-type ATP synthase C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D A355_03 atpB; F0F1-type ATP synthase A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:crt03000] D A355_093 putA; delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] C 03021 Transcription machinery [BR:crt03021] D A355_0163 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D A355_0190 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D A355_0189 rpoC; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D A355_066 rpoD; putative RNA polymerase sigma factor rpoD K03086 rpoD; RNA polymerase primary sigma factor C 03019 Messenger RNA biogenesis [BR:crt03019] D A355_074 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D A355_056 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] C 03041 Spliceosome C 03011 Ribosome [BR:crt03011] D A355_055 rpsA; putative ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D A355_020 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D A355_0178 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D A355_0164 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D A355_0169 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D A355_0187 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D A355_0172 rpsH; putative ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D A355_051 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D A355_0184 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D A355_0165 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D A355_0188 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D A355_0166 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D A355_0173 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D A355_0151 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D A355_0176 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D A355_0180 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D A355_0193 rplA; putative ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D A355_0181 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D A355_0183 rplC; putative ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D A355_0182 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D A355_0174 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D A355_0171 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D A355_0194 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D A355_0191 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D A355_050 rplM; putative ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D A355_0175 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D A355_0168 rplO; putative ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D A355_0177 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D A355_0149 rplS; putative ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D A355_0107 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D A355_0161 rplU; putative ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D A355_0160 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D A355_0143 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D A355_026 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D A355_0142 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D A355_0167 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D A355_0138 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D A355_0140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D A355_0139 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:crt03009] D A355_0159 obgE; putative GTPase K03979 obgE; GTPase [EC:3.6.5.-] D A355_0156 rluD; ribosomal large subunit pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] C 03016 Transfer RNA biogenesis [BR:crt03016] D A355_0120 gltX; putative glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D A355_0157 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D A355_0117 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D A355_0122 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D A355_083 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D A355_0145 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D A355_090 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D A355_0100 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D A355_0135 valS; putative valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D A355_082 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D A355_0141 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D A355_01 trmE; tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D A355_02 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D A355_0208 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D A355_0115 yleA; isopentenyl-adenosine tRNA methylthiolase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D A355_036 trmU; putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] C 03012 Translation factors [BR:crt03012] D A355_080 infB; putative translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D A355_0109 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D A355_0185 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D A355_0186 fusA; elongation factor G K02355 fusA; elongation factor G D A355_046 prfA; putative peptide chain release factor A K02835 prfA; peptide chain release factor 1 D A355_022 frr; putative ribosome recycling factor K02838 frr; ribosome recycling factor D A355_037 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D A355_0146 prfB; peptide chain release factor B K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:crt03110] D A355_088 clpX; ATP-dependent Clp protease ATP-binding subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D A355_074 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D A355_056 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D A355_073 grpE; chaperone protein GrpE K03687 GRPE; molecular chaperone GrpE D A355_057 groES; chaperonin GroES K04078 groES; chaperonin GroES D A355_03 atpB; F0F1-type ATP synthase A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a C 04131 Membrane trafficking C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:crt03032] D A355_062 dnaB; putative replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D A355_023 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D A355_0104 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] C 03036 Chromosome and associated proteins [BR:crt03036] D A355_02 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme C 03400 DNA repair and recombination proteins [BR:crt03400] D A355_0190 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D A355_0189 rpoC; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D A355_0163 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D A355_023 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D A355_0104 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D A355_0134 recA; RecA recombinase K03553 recA; recombination protein RecA D A355_014 nrdA; putative ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:crt03029] D A355_080 infB; putative translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D A355_0109 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D A355_0185 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D A355_0186 fusA; elongation factor G K02355 fusA; elongation factor G D A355_082 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D A355_0117 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D A355_090 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D A355_048 gatA; aspartyl/glutamyl-tRNA amidotransferase A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D A355_047 gatB; aspartyl/glutamyl-tRNA amidotransferase B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D A355_074 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D A355_073 grpE; chaperone protein GrpE K03687 GRPE; molecular chaperone GrpE D A355_056 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D A355_057 groES; chaperonin GroES K04078 groES; chaperonin GroES B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:crt02000] D A355_033 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein C 02044 Secretion system C 02042 Bacterial toxins C 02022 Two-component system C 02035 Bacterial motility proteins C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins C 04147 Exosome [BR:crt04147] D A355_0136 ahpC; alkyl hydroperoxide reductase K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D A355_056 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D A355_074 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D A355_0185 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D A355_0205 argH; putative argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D A355_0124 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] C 02048 Prokaryotic defense system [BR:crt02048] D A355_0120 gltX; putative glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:crt03100] D A355_067 trnA(TGC); tRNA-Ala K14218 tRNA-Ala; tRNA Ala D A355_085 trnR(TCT); tRNA-Arg K14219 tRNA-Arg; tRNA Arg D A355_0130 trnR(ACG); tRNA-Arg K14219 tRNA-Arg; tRNA Arg D A355_043 trnN(GTT); tRNA-Asn K14220 tRNA-Asn; tRNA Asn D A355_059 trnD(GTC); tRNA-Asp K14221 tRNA-Asp; tRNA Asp D A355_0125 trnC(GCA); tRNA-Cys K14222 tRNA-Cys; tRNA Cys D A355_070 trnQ(TTG); tRNA-Gln K14223 tRNA-Gln; tRNA Gln D A355_038 trnE(TTC); tRNA-Glu K14224 tRNA-Glu; tRNA Glu D A355_0196 trnG(TCC); tRNA-Gly K14225 tRNA-Gly; tRNA Gly D A355_039 trnG(GCC); tRNA-Gly K14225 tRNA-Gly; tRNA Gly D A355_086 trnH(GTG); tRNA-His K14226 tRNA-His; tRNA His D A355_017 trnI(GAT); tRNA-Ile K14227 tRNA-Ile; tRNA Ile D A355_079 trnL(AAG); tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A355_0126 trnL(TAA); tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A355_0101 trnL(TAG); tRNA-Leu K14228 tRNA-Leu; tRNA Leu D A355_0128 trnK(TTT); tRNA-Lys K14229 tRNA-Lys; tRNA Lys D A355_044 trnM(CAT); tRNA-Met K14230 tRNA-Met; tRNA Met D A355_0121 trnI(CAT); tRNA-Ile K14230 tRNA-Met; tRNA Met D A355_0152 trnfM(CAT); tRNA-Met K14230 tRNA-Met; tRNA Met D A355_069 trnF(GAA); tRNA-Phe K14231 tRNA-Phe; tRNA Phe D A355_084 trnP(TGG); tRNA-Pro K14232 tRNA-Pro; tRNA Pro D A355_091 trnS(TGA); tRNA-Ser K14233 tRNA-Ser; tRNA Ser D A355_0131 trnS(GCT); tRNA-Ser K14233 tRNA-Ser; tRNA Ser D A355_040 trnS(GGA); tRNA-Ser K14233 tRNA-Ser; tRNA Ser D A355_071 trnT(TGT); tRNA-Thr K14234 tRNA-Thr; tRNA Thr D A355_0195 trnW(CCA); tRNA-Trp K14235 tRNA-Trp; tRNA Trp D A355_0197 trhY(GTA); tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D A355_058 trnV(TAC); tRNA-Val K14237 tRNA-Val; tRNA Val D A355_0140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D A355_0139 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D A355_0138 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D A355_0204 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] C 99981 Carbohydrate metabolism C 99982 Energy metabolism C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism C 99987 Cofactor metabolism C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D A355_0210 cspE; cold shock protein K03704 cspA; cold shock protein C 99974 Translation C 99975 Protein processing C 99976 Replication and repair C 99979 Viral proteins C 99998 Others B B 09193 Unclassified: signaling and cellular processes C 99977 Transport C 99978 Cell growth C 99993 Cell motility C 99995 Signaling proteins C 99992 Structural proteins C 99994 Others B B 09194 Poorly characterized C 99996 General function prediction only D A355_032 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB C 99997 Function unknown ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 29, 2024