+F Repair protein KO #

  DNA Repair and Recombination Proteins - Chromobacterium rhizoryzae

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D D1345_03675 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D D1345_19080 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E D1345_22730 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E D1345_03510 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E D1345_06770 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D D1345_00355 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D D1345_04485 Nudix family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D D1345_16375 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D D1345_15905 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D D1345_00120 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D D1345_05445 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D D1345_03675 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D D1345_22775 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D D1345_23195 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D D1345_19080 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D D1345_12360 cryptochrome/photolyase family protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D D1345_14000 alkB; DNA oxidative demethylase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E D1345_22730 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E D1345_07345 DNA-deoxyinosine glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E D1345_04870 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E D1345_13995 DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E D1345_03510 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E D1345_12695 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E D1345_19350 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E D1345_06770 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E D1345_01680 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E D1345_19570 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E D1345_09905 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E D1345_03060 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E D1345_20030 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E D1345_06935 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E D1345_13145 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B E D1345_17045 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C E D1345_00925 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E D1345_20030 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E D1345_03060 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F D1345_01935 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F D1345_01940 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F D1345_02095 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F D1345_18765 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F D1345_04085 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E D1345_17740 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E D1345_06550 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E D1345_05275 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E D1345_04080 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E D1345_07395 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E D1345_02650 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E D1345_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E D1345_08160 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E D1345_00825 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E D1345_03415 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E D1345_03215 ethanolamine utilization protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E D1345_10290 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E D1345_09675 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E D1345_17335 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E D1345_05960 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E D1345_03060 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E D1345_00925 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E D1345_06925 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E D1345_09475 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E D1345_19425 recB; exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E D1345_02415 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E D1345_19410 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E D1345_05945 recA; recombinase RecA K03553 recA; recombination protein RecA E D1345_01765 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E D1345_01795 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E D1345_01760 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E D1345_09305 hypothetical protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E D1345_17475 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E D1345_04120 priB; primosomal replication protein N K02686 priB; primosomal replication protein N E D1345_05275 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E D1345_10015 exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E D1345_10010 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E D1345_05945 recA; recombinase RecA K03553 recA; recombination protein RecA E D1345_13625 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E D1345_18025 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E D1345_09905 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E D1345_08480 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E D1345_05975 recR; recombination protein RecR K06187 recR; recombination protein RecR E D1345_09550 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E D1345_04655 rdgC; recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E D1345_10435 hypothetical protein K03554 rdgC; recombination associated protein RdgC E D1345_01765 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E D1345_01795 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E D1345_01760 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E D1345_18410 cas1f; type I-F CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E D1345_10015 exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E D1345_10010 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F D1345_09920 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F D1345_00015 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F D1345_01545 type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F D1345_09795 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F D1345_18230 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F D1345_09460 recombinase RecT K07455 recT; recombination protein RecT F D1345_09905 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F D1345_08480 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F D1345_05975 recR; recombination protein RecR K06187 recR; recombination protein RecR F D1345_03060 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F D1345_21355 DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F D1345_06615 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F D1345_14220 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F D1345_05275 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F D1345_00635 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F D1345_06935 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F D1345_13145 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B F D1345_05360 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F D1345_14810 H-NS histone family protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D D1345_01170 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D D1345_03210 Y-family DNA polymerase K03502 umuC; DNA polymerase V D D1345_10730 Y-family DNA polymerase K03502 umuC; DNA polymerase V D D1345_16915 Y-family DNA polymerase K03502 umuC; DNA polymerase V D D1345_08505 peptidase S24 K03503 umuD; DNA polymerase V [EC:3.4.21.-] D D1345_10735 error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] D D1345_12710 peptidase S24 K03503 umuD; DNA polymerase V [EC:3.4.21.-] D D1345_16910 error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D D1345_05945 recA; recombinase RecA K03553 recA; recombination protein RecA D D1345_09550 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D D1345_06925 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D D1345_09475 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D D1345_05940 recX; recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D D1345_19380 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D D1345_08305 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D D1345_04485 Nudix family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D D1345_16375 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D D1345_15905 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D D1345_00120 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D D1345_05445 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D D1345_13425 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D D1345_12265 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D D1345_12285 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024