+E Replication protein KO
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DNA Replication Proteins - Dickeya aquatica
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AEukaryotic type
B DNA Replication Initiation Factors
C pre-RC (pre-replication complex)
C CDK (cyclin dependent kinase)
C DDK (Dbf-4 dependent kinase)
C GINS complex
C Other initiation factors
B DNA Replication Elongation Factors
C DNA polymerase alpha / primase complex
C DNA polymerase epsilon complex
C DNA polymerase delta complex
C DNA polymerase gamma complex (mitochondrial)
C RPA (replication protein A)
C RFC (replication factor C)
C RNase H
D DAQ1742_00989 rnhA; Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
C Other elongation factors
B DNA Replication Termination Factors
C DNA methylation enzymes
D DAQ1742_01909 macromolecule metabolism; macromolecule synthesis, modification; dna-replication, repair, restr./modif. K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DAQ1742_02641 Modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Prevention of re-replication factors
C Telomere proteins
D Shelterin complex
D TERB1-TERB2-MAJIN complex
D CST complex (animals)
D CST complex (yeast)
D RIF proteins
D SIR proteins
C Telomerase complex (animals)
D Dyskerin complex
C Telomerase complex (fungi)
D Sm core complex
C ELG1-RFC complex
C MRN complex
C Other termination factors
B DNA Topoisomerases
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AProkaryotic type
B DNA Replication Initiation Factors
C Initiation factors (bacterial)
D DAQ1742_00311 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha
D DAQ1742_03210 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D DAQ1742_02472 himA; Integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha
D DAQ1742_02085 himD; Integration host factor beta subunit K05788 ihfB; integration host factor subunit beta
D DAQ1742_04436 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D DAQ1742_03656 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D DAQ1742_00672 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D DAQ1742_03738 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DAQ1742_01284 Putative single stranded DNA-binding protein of prophage K03111 ssb; single-strand DNA-binding protein
C Initiation factors (archaeal)
B DNA Replication Elongation Factors
C Elongation factors (bacterial)
D DNA polymerase III holoenzyme
E DAQ1742_03310 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E DAQ1742_04435 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E DAQ1742_00494 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E DAQ1742_03045 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E DAQ1742_02835 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E DAQ1742_00990 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E DAQ1742_03133 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
E DAQ1742_00725 holD; DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
E DAQ1742_02289 holE; DNA polymerase III theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D RNase H
E DAQ1742_00989 rnhA; Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
E DAQ1742_03311 rnhB; ribonuclease HII nicks DNA 5' to misincorporated ribonucleotides K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Other elongation factors
E DAQ1742_00022 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E DAQ1742_03569 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E DAQ1742_00043 ligB; DNA ligase, LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C Elongation factors (archaeal)
D B-family DNA polymerases
D D-family DNA polymerases
D RNase H
E DAQ1742_00989 rnhA; Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
E DAQ1742_03311 rnhB; ribonuclease HII nicks DNA 5' to misincorporated ribonucleotides K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RFC (replication factor C)
D Other elongation factors
B DNA Replication Termination Factors
C Terminus site-binding protein
D DAQ1742_02190 tus; DNA replication terminus site-binding protein K10748 tus; DNA replication terminus site-binding protein
C DNA methylation enzymes
D DAQ1742_01910 Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D DAQ1742_04124 dam; Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C Prevention of re-replication factors
D DAQ1742_03006 seqA; SeqA protein, negative modulator of initiation of replication K03645 seqA; negative modulator of initiation of replication
D DAQ1742_03075 hda; ATPase regulatory factor involved in DnaA inactivation K10763 hda; DnaA-homolog protein
B DNA Topoisomerases
C DAQ1742_03112 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
C DAQ1742_04433 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
C DAQ1742_00427 parC; Topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
C DAQ1742_00423 parE; Topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
C DAQ1742_02217 topA; DNA topoisomerase I, omega subunit K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C DAQ1742_02268 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 2, 2022