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  Transfer RNA Biogenesis - Desulforapulum autotrophicum

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AEukaryotic type B 5'processing factors C Ribonucrease P B 3'processing and CCA adding factors C 3'processing factors D HRM2_26070 putative ribonuclease T2-family protein K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] C CCA adding factors D HRM2_22310 polyA polymerase family protein (tRNA nucleotidyltransferase) (tRNA CCA-pyrophosphorylase) K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D HRM2_21820 putative tRNA nucleotidyl transferase protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D HRM2_45970 tRNA nucleotidyltransferase/poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] B tRNA spricing factors C tRNA splicing endonuclease complex C tRNA splicing ligase complex D HRM2_05280 rtcB; RtcB K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] C Other tRNA splicing factors B tRNA transport factors C tRNA export factors C tRNA import factors B Aminoacyl-tRNA synthetases (AARSs) C Multi-aminoacyl-tRNA synthetase complex (MSC) D HRM2_31340 gltX; GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D HRM2_12280 proS; ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D HRM2_24890 ileS; IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D HRM2_27190 leuS; LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D HRM2_26810 metS; MetS K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D HRM2_23310 glnS; GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D HRM2_31550 argS; ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D HRM2_22380 lysS1; LysS1 K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D HRM2_02550 aspS; AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] C Other AARSs D HRM2_27330 alaS1; AlaS1 K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D HRM2_06730 asnS; AsnS K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D HRM2_37660 thrS2; ThrS2 K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D HRM2_11070 serS; SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D HRM2_26740 cysS3; CysS3 K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D HRM2_23300 cysS2; CysS2 K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D HRM2_20130 cysS1; CysS1 K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D HRM2_20900 valS; ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D HRM2_02540 hisS; HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D HRM2_04610 pheS; PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D HRM2_04620 pheT; PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D HRM2_35120 tyrS; TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D HRM2_22300 trpS; TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C Trans-editing factors D HRM2_22910 dtd; Dtd K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D HRM2_40520 alaS2; AlaS2 K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] C AARS associated factors D HRM2_38420 hit; Hit K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] B tRNA modification factors C Deaminases C Dihydorouridine synthases C Methylthiotransferase C Methyltransferases D HRM2_00570 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D HRM2_26860 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] C Psudouridine synthases D HRM2_22180 truA1; TruA1 K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D HRM2_39310 truA2; TruA2 K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D HRM2_04680 truB; TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] C Thiolation factors D HRM2_41130 iscS2; IscS2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D HRM2_34850 iscS1; IscS1 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C KEOPS/EKC complex C Elongator complex C Elongator related proteins C Other tRNA modification factors D HRM2_09310 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D HRM2_22110 miaA; MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D HRM2_06650 trmE; TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D HRM2_32160 gidA; GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D HRM2_17850 selD1; SelD1 K01008 selD; selenide, water dikinase [EC:2.7.9.3] D HRM2_34830 selD2; SelD2 K01008 selD; selenide, water dikinase [EC:2.7.9.3] B tRNA degradation factors C TRAMP complex C Rapid tRNA decay (RTD) pathway factors C Other tRNA degradation factors # AProkaryotic type B 5'processing factors C Ribonucrease P D HRM2_06690 rnpA; RnpA K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] B 3'processing and CCA adding factors C 3'processing factors D HRM2_33040 putative ribonuclease II (RNB family protein) K01147 rnb; exoribonuclease II [EC:3.1.13.1] D HRM2_37670 rnd; Rnd K03684 rnd; ribonuclease D [EC:3.1.13.5] D HRM2_26070 putative ribonuclease T2-family protein K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] C CCA adding factors D HRM2_22310 polyA polymerase family protein (tRNA nucleotidyltransferase) (tRNA CCA-pyrophosphorylase) K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D HRM2_21820 putative tRNA nucleotidyl transferase protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D HRM2_45970 tRNA nucleotidyltransferase/poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] B tRNA spricing factors C tRNA splicing endonucleases C tRNA splicing ligases D HRM2_05280 rtcB; RtcB K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] C Other tRNA splicing factors B tRNA transport factors C tRNA export factors D HRM2_35460 ABC transport system, ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA B Aminoacyl-tRNA synthetases (AARSs) C Multi-aminoacyl-tRNA synthetase complex (MSC) D HRM2_27190 leuS; LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D HRM2_12280 proS; ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] C Other AARSs D HRM2_35120 tyrS; TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D HRM2_22300 trpS; TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D HRM2_37660 thrS2; ThrS2 K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D HRM2_24890 ileS; IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D HRM2_22380 lysS1; LysS1 K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D HRM2_27330 alaS1; AlaS1 K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D HRM2_20900 valS; ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D HRM2_26810 metS; MetS K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D HRM2_11070 serS; SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D HRM2_02550 aspS; AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D HRM2_28140 glyQ; GlyQ K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D HRM2_28130 glyS; GlyS K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D HRM2_26740 cysS3; CysS3 K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D HRM2_23300 cysS2; CysS2 K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D HRM2_20130 cysS1; CysS1 K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D HRM2_31340 gltX; GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D HRM2_23310 glnS; GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D HRM2_31550 argS; ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D HRM2_04610 pheS; PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D HRM2_04620 pheT; PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D HRM2_02540 hisS; HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D HRM2_06730 asnS; AsnS K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] C Trans-editing factors D HRM2_22910 dtd; Dtd K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D HRM2_05370 ybaK; YbaK K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D HRM2_40520 alaS2; AlaS2 K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] B tRNA modification factors C Deaminases D HRM2_17420 putative riboflavin biosynthesis protein ribD K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D HRM2_04570 putative cytidine/deoxycytidylate deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] C Dihydorouridine synthases D HRM2_09020 dhs2; Dhs2 K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D HRM2_08880 dhs1; Dhs1 K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D HRM2_10910 dihydrouridine synthase family protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] C Methylthiotransferases D HRM2_21710 miaB; MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D HRM2_45850 putative methylthioadenine synthetase K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] C Methyltransferases D HRM2_28930 SAM-dependent methyltransferase family protein K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D HRM2_28920 conserved hypothetical protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D HRM2_30700 trmH2; TrmH2 K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D HRM2_12780 trmH1; TrmH1 K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D HRM2_30980 trmD; TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D HRM2_06650 trmE; TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D HRM2_00570 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D HRM2_26860 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D HRM2_16490 SAM-dependent methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] C Psudouridine synthases D HRM2_22180 truA1; TruA1 K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D HRM2_39310 truA2; TruA2 K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D HRM2_04680 truB; TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D HRM2_35810 truC; TruC K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D HRM2_26520 rluD2; RluD2 K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] C Thiolation factors D HRM2_45860 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D HRM2_30350 putative ATPase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D HRM2_18010 hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein D HRM2_41130 iscS2; IscS2 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D HRM2_34850 iscS1; IscS1 K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C KEOPS/EKC complex C Other tRNA modification factors D HRM2_32160 gidA; GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D HRM2_22110 miaA; MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D HRM2_31400 queA; QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D HRM2_11440 ptpS; PtpS K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D HRM2_14250 leucine-rich ARM-like family protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D HRM2_23120 conserved hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6] D HRM2_17850 selD1; SelD1 K01008 selD; selenide, water dikinase [EC:2.7.9.3] D HRM2_34830 selD2; SelD2 K01008 selD; selenide, water dikinase [EC:2.7.9.3] D HRM2_31390 tgt; Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D HRM2_05070 tRNA(Ile)-lysidine synthetase-like protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D HRM2_30390 putative peptidase M22 K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D HRM2_09310 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D HRM2_13580 metalloendopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D HRM2_35860 conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D HRM2_28940 moeB2; MoeB2 K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase B tRNA degradation factors C HRM2_04700 pnpA; PnpA K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024