+E Ribosome biogenesis KO
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Ribosome Biogenesis - Deinococcus geothermalis
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D Dgeo_1892 double-stranded RNA binding protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D Dgeo_0361 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C Dgeo_1825 GTP-binding protein Era K03595 era; GTPase
C Dgeo_2218 GTP1/OBG family GTPase K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C Dgeo_1234 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C Dgeo_0698 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
C Dgeo_0643 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D Dgeo_1143 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Dgeo_1498 rRNA methyltransferase, sun family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Dgeo_1622 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D Dgeo_0285 SAM-dependent methyltransferase, rRNA adenine N-6-methyltransferase family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Dgeo_0838 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Dgeo_2335 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Dgeo_0766 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Dgeo_1638 Tetrapyrrole methylase family enzyme K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D Dgeo_2022 RNA methyltransferase TrmH, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Dgeo_1641 23S rRNA (pseudouridine-1915-N(3)-) methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Dgeo_1462 SAM dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Dgeo_0619 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Dgeo_0969 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Dgeo_0633 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Dgeo_1777 (Uracil-5)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Dgeo_0763 Pseudouridine synthase, Rsu K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Dgeo_0604 Pseudouridine synthase, RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Dgeo_0896 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Dgeo_2226 Pseudouridine synthase, RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C Dgeo_1485 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C Dgeo_0375 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C Dgeo_0839 [LSU ribosomal protein L11P]-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C Dgeo_1892 double-stranded RNA binding protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Dgeo_0425 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
B GTPases
C Dgeo_1825 GTP-binding protein Era K03595 era; GTPase
C Dgeo_2103 Small GTP-binding protein domain K03977 engA; GTPase
C Dgeo_2218 GTP1/OBG family GTPase K03979 obgE; GTPase [EC:3.6.5.-]
C Dgeo_2006 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C Dgeo_0758 Sua5/YciO/YrdC/YwlC K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C Dgeo_1308 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C Dgeo_1695 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C Dgeo_1233 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
C Dgeo_1647 RNA-binding S4 K14761 rlbA; ribosome-associated protein
C Dgeo_0131 Iojap-related protein K09710 ybeB; ribosome-associated protein
C Dgeo_1273 Predicted metal-dependent hydrolase, UPF0054 K07042 ybeY; probable rRNA maturation factor
C Dgeo_1384 sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor
C Dgeo_1574 GTPase, probable translation factor K06942 ychF; ribosome-binding ATPase
C Dgeo_0339 Zn-finger-like protein, DUF177 K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024