+E Ribosome biogenesis KO
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Ribosome Biogenesis - Deinococcus gobiensis
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D DGo_CA0844 Double-stranded RNA binding protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D DGo_CA0360 SudD-related protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C DGo_CA0852 GTP-binding protein era-like protein K03595 era; GTPase
C DGo_CA2936 obgE; GTP-binding protein ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C DGo_CA1370 nusA; NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C DGo_CA1176 N utilization substance protein B-like protein K03625 nusB; transcription antitermination protein NusB
C DGo_CA1141 nusG; Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D DGo_CA1211 ksgA; Dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D DGo_CA1522 rRNA methyltransferase, sun family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D DGo_CA1093 rsmC; rRNA methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D DGo_CA0955 SAM-dependent methyltransferase, rRNA adenine N-6-methyltransferase family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D DGo_CA1861 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D DGo_CA0082 Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D DGo_CA2156 mraW; S-adenosyl-L-methionine-dependent methyltransferase mraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D DGo_CA0827 yraL; Tetrapyrrole methylase family enzyme K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D DGo_CA2423 RNA methyltransferase TrmH, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D DGo_CA0824 UPF0247 protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D DGo_CA1022 SAM dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D DGo_CA1650 SAM dependent methylase containing RNA-binding PUA domain K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D DGo_CA2229 SAM-dependent methyltransferase containing PUA domain K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D DGo_CA2225 Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D DGo_CA2845 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D DGo_CA2160 Pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D DGo_CA1085 Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D DGo_CA1851 rluA; Ribosomal large subunit pseudouridine synthase, Rlu family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D DGo_CA2291 Pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C DGo_CA1701 rimM; Ribosome maturation factor rimM K02860 rimM; 16S rRNA processing protein RimM
C DGo_PA0177 yliG; Radical SAM superfamily enzyme K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C DGo_CA1862 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C DGo_CA0844 Double-stranded RNA binding protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
C DGo_CA0376 yqgF; Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
B GTPases
C DGo_CA0852 GTP-binding protein era-like protein K03595 era; GTPase
C DGo_CA0316 GTP-binding protein engA K03977 engA; GTPase
C DGo_CA2936 obgE; GTP-binding protein ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C DGo_CA2820 hflX; GTP-binding protein, HSR1-related protein K03665 hflX; GTPase
B Other maturation factors
C DGo_CA2167 Sua5/YciO/YrdC/YwlC K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C DGo_CA1014 spoT; ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C DGo_CA0877 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C DGo_CA1369 UPF0090 protein K09748 rimP; ribosome maturation factor RimP
C DGo_CA0930 RNA-binding S4 K14761 rlbA; ribosome-associated protein
C DGo_CA2653 Iojap-related protein K09710 ybeB; ribosome-associated protein
C DGo_CA1291 yqfG; Putative metalloprotease K07042 ybeY; probable rRNA maturation factor
C DGo_CA1867 yvyD; Sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor
C DGo_CA1218 ychF; GTPase, probable translation factor K06942 ychF; ribosome-binding ATPase
C DGo_CA0313 Zn-finger-like protein, DUF177 K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024