+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Equus caballus (horse)
%
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 100050190 RNMT; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 100065700 RNGTT; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 100049964 CDK7; cyclin-dependent kinase 7 isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 100064496 CMTR1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 isoform X1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 100068485 CMTR2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 100053089 FAM103A1; RNMT-activating mini protein K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 100064523 NCBP1; nuclear cap-binding protein subunit 1 isoform X1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 100060150 NCBP2; nuclear cap-binding protein subunit 2 isoform X2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 100051355 NUDT21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 100059688 CPSF6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 100059747 CPSF7; cleavage and polyadenylation specificity factor subunit 7 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 100066955 CLP1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 100061695 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 100063277 CPSF1; cleavage and polyadenylation specificity factor subunit 1 isoform X1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 100053213 CPSF2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 100072510 CPSF3; cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 100059364 CPSF4; cleavage and polyadenylation specificity factor subunit 4 isoform X1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 100061214 CPSF4L; putative cleavage and polyadenylation specificity factor subunit 4-like protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 100060154 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 100067505 WDR33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 100060351 WDR82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 100071067 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 100058160 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 100059233 PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 106782823 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 100050229 CSTF1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 100057347 CSTF2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 100062520 CSTF2T; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 100060162 CSTF3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 100070949 SYMPK; symplekin isoform X1 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 100053021 SNRPB; small nuclear ribonucleoprotein-associated proteins B and B' isoform X2 K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 100050121 SNRPD3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 106783117 SNRPE; small nuclear ribonucleoprotein E isoform X1 K11097 SNRPE; small nuclear ribonucleoprotein E
E 100630068 SNRPF; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 100629246 SNRPG; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 100069271 LSM10; U7 snRNA-associated Sm-like protein LSm10 isoform X2 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 100071186 LSM11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 100053213 CPSF2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 100072510 CPSF3; cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 100057347 CSTF2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 100062520 CSTF2T; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 100070949 SYMPK; symplekin isoform X1 K06100 SYMPK; symplekin
E 100052514 SLBP; histone RNA hairpin-binding protein isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 100913084 SLBP2; stem loop binding protein 2 K18710 SLBP; histone RNA hairpin-binding protein
E 100065766 CASP8AP2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 100056960 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 100064516 SUPT5H; transcription elongation factor SPT5 isoform X2 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 100059413 METTL3; N6-adenosine-methyltransferase catalytic subunit isoform X1 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 100072440 METTL14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 100061890 METTL4; methyltransferase-like protein 4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 100060313 METTL16; U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 100050768 WTAP; pre-mRNA-splicing regulator WTAP isoform X1 K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 100052391 pre-mRNA-splicing regulator WTAP isoform X1 K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 100055169 VIRMA; protein virilizer homolog isoform X1 K22910 VIRMA; protein virilizer
E 100058541 RBM15; putative RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 100061254 RBM15B; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 100050744 ZC3H13; zinc finger CCCH domain-containing protein 13 isoform X4 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 100050845 CBLL1; E3 ubiquitin-protein ligase Hakai isoform X4 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
E 100059563 ZNF645; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase ZNF645 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 100052114 PAPOLG; poly(A) polymerase gamma K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 100054383 PAPOLA; poly(A) polymerase alpha isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 111776173 PAPOLB; LOW QUALITY PROTEIN: poly(A) polymerase beta K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 100065390 PAPD4; poly(A) RNA polymerase GLD2 isoform X4 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 100060118 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase isoform X4 K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 100053962 BARD1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 100050021 RBM26; RNA-binding protein 26 K13192 RBM26; RNA-binding protein 26
E 100060565 FTO; alpha-ketoglutarate-dependent dioxygenase FTO isoform X3 K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 100050716 ALKBH5; RNA demethylase ALKBH5 isoform X1 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 100051482 TARDBP; TAR DNA-binding protein 43 isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 100071065 DHX40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 100057012 KIN; DNA/RNA-binding protein KIN17 isoform X2 K13102 KIN; DNA/RNA-binding protein KIN17
D 100063530 METTL8; methyltransferase-like protein 8 isoform X2 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 100057604 METTL22; methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 100069784 FAM46A; putative nucleotidyltransferase FAM46A isoform X1 K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 100070967 FAM46B; putative nucleotidyltransferase FAM46B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 100059755 FAM46C; putative nucleotidyltransferase FAM46C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 100072545 FAM46D; putative nucleotidyltransferase FAM46D K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 100062155 ZC3H14; zinc finger CCCH domain-containing protein 14 isoform X9 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 100067574 SRRT; serrate RNA effector molecule homolog isoform X6 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 100034052 RBM8A; RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E 100060994 MAGOH; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 100065075 protein mago nashi homolog 2 isoform X1 K12877 MAGOH; protein mago nashi
E 100063178 protein mago nashi homolog 2 isoform X1 K12877 MAGOH; protein mago nashi
E 106782613 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 100146384 DDX39B; spliceosome RNA helicase DDX39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 100056586 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 100055882 CCDC174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 100067814 CASC3; protein CASC3 K14323 CASC3; protein CASC3
E 100050218 SAP18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 100060952 PNN; pinin K13114 PNN; pinin
E 100055865 ACIN1; apoptotic chromatin condensation inducer in the nucleus isoform X4 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 100065738 RNPS1; RNA-binding protein with serine-rich domain 1 isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 100071467 SRRM1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 100051155 THOC1; THO complex subunit 1 isoform X1 K12878 THOC1; THO complex subunit 1
E 100055091 THOC2; THO complex subunit 2 isoform X6 K12879 THOC2; THO complex subunit 2
E 100068979 THOC3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 106782613 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 100059017 THOC5; THO complex subunit 5 homolog isoform X2 K13174 THOC5; THO complex subunit 5
E 100068915 THOC6; THO complex subunit 6 homolog isoform X2 K13175 THOC6; THO complex subunit 6
E 100056004 THOC7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 100067141 PCID2; PCI domain-containing protein 2 isoform X1 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 102150324 SEM1; LOW QUALITY PROTEIN: 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 100056701 ENY2; transcription and mRNA export factor ENY2 isoform X1 K11368 ENY2; enhancer of yellow 2 transcription factor
E 100063613 CETN2; centrin-2 K10840 CETN2; centrin-2
E 100065122 CETN3; centrin-3 K16466 CETN3; centrin-3
E 100049836 MCM3AP; germinal-center associated nuclear protein isoform X1 K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 100049850 TPR; nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR
E 100050441 RAE1; mRNA export factor K14298 RAE1; mRNA export factor
E 100057913 SEC13; protein SEC13 homolog isoform X1 K14004 SEC13; protein transport protein SEC13
E 100053164 NUP37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 100052049 NUP85; nuclear pore complex protein Nup85 isoform X2 K14304 NUP85; nuclear pore complex protein Nup85
E 100064615 NUP43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 100051494 NUP50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 100051138 NUP54; nucleoporin p54 isoform X2 K14308 NUP54; nuclear pore complex protein Nup54
E 100056315 NUP62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 100060548 NUP62CL; nucleoporin-62 C-terminal-like protein isoform X1 K14306 NUP62; nuclear pore complex protein Nup62
E 100061117 NUP88; nuclear pore complex protein Nup88 isoform X1 K14318 NUP88; nuclear pore complex protein Nup88
E 100051892 NUP93; nuclear pore complex protein Nup93 isoform X1 K14309 NUP93; nuclear pore complex protein Nup93
E 100052986 NUP98; nuclear pore complex protein Nup98-Nup96 isoform X2 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 100059287 NUP107; nuclear pore complex protein Nup107 isoform X1 K14301 NUP107; nuclear pore complex protein Nup107
E 100065427 NUP133; nuclear pore complex protein Nup133 isoform X1 K14300 NUP133; nuclear pore complex protein Nup133
E 100070114 NUP188; nucleoporin NUP188 homolog isoform X1 K14311 NUP188; nuclear pore complex protein Nup188
E 100066078 NUP153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 100053405 NUP155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 100058528 NUP160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 100054143 NUP35; nucleoporin NUP53 K14313 NUP35; nuclear pore complex protein Nup53
E 100064995 NUP205; nuclear pore complex protein Nup205 isoform X1 K14310 NUP205; nuclear pore complex protein Nup205
E 100055192 NUP210; nuclear pore membrane glycoprotein 210 isoform X1 K14314 NUP210; nuclear pore complex protein Nup210
E 100056659 NUP210L; nuclear pore membrane glycoprotein 210-like isoform X6 K14314 NUP210; nuclear pore complex protein Nup210
E 100069634 NUP214; LOW QUALITY PROTEIN: nuclear pore complex protein Nup214 K14317 NUP214; nuclear pore complex protein Nup214
E 111767496 nuclear pore complex protein Nup214-like isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 100064071 POM121L2; POM121-like protein 2 K14316 POM121; nuclear pore complex protein Nup121
E 100061320 POM121C; nuclear envelope pore membrane protein POM 121C isoform X1 K14316 POM121; nuclear pore complex protein Nup121
E 111774246 nuclear envelope pore membrane protein POM 121C-like K14316 POM121; nuclear pore complex protein Nup121
E 100059114 NUP58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 100053709 NUPL2; nucleoporin-like protein 2 K14321 NUPL2; nucleoporin-like protein 2
E 100050513 NDC1; nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 100630847 SEH1L; nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 100060826 E3 SUMO-protein ligase RanBP2 isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 100059276 SENP2; sentrin-specific protease 2 isoform X1 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 100063811 AAAS; aladin isoform X1 K14320 AAAS; aladin
E 100065122 CETN3; centrin-3 K16466 CETN3; centrin-3
E 100066964 GLE1; nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1
E 100049009 NXF1; nuclear RNA export factor 1 isoform 2 K14284 NXF; nuclear RNA export factor
E 100060240 nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 100060140 nuclear RNA export factor 3 isoform X2 K14284 NXF; nuclear RNA export factor
E 100060201 nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 100060857 LOW QUALITY PROTEIN: nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 100067224 nuclear RNA export factor 3-like K14284 NXF; nuclear RNA export factor
E 111771475 nuclear RNA export factor 3-like K14284 NXF; nuclear RNA export factor
E 100059798 NXT2; NTF2-related export protein 2 isoform X1 K14285 NXT1_2; NTF2-related export protein 1/2
E 102149448 NXT1; NTF2-related export protein 1 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 100062767 RAN; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 100065117 ANP32A; acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X2 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 100064179 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 100147233 TNFSF13; tumor necrosis factor ligand superfamily member 13 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 100060819 ELAVL1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 100053407 ELAVL2; ELAV-like protein 2 isoform X2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 100056901 ELAVL3; ELAV-like protein 3 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 100051268 ELAVL4; ELAV-like protein 4 isoform X3 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 100068860 FAF2; FAS-associated factor 2 isoform X2 K18726 FAF2; FAS-associated factor 2
E 100068225 VCP; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 100051676 VCPKMT; protein-lysine methyltransferase METTL21D isoform X1 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 100063482 TNPO2; transportin-2 isoform X1 K18727 TNPO2; transportin-2
E 100051994 XPO1; exportin-1 isoform X1 K14290 XPO1; exportin-1
E 100056362 XPO7; exportin-7 isoform X3 K18460 XPO7; exportin-7
E 100070317 RANBP17; ran-binding protein 17 isoform X1 K24115 RANBP17; Ran-binding protein 17
E 100628308 RANGAP1; ran GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 100071562 TAF15; TATA-binding protein-associated factor 2N isoform X1 K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E 100057254 EIF4E2; eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 100066216 EIF4E; eukaryotic translation initiation factor 4E isoform X1 K03259 EIF4E; translation initiation factor 4E
E 100068758 EIF4E1B; eukaryotic translation initiation factor 4E type 1B isoform X2 K03259 EIF4E; translation initiation factor 4E
E 100061902 EIF4A1; eukaryotic initiation factor 4A-I isoform X2 K03257 EIF4A; translation initiation factor 4A
E 100068164 EIF4A2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 791239 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 100071378 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 100033975 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 K03260 EIF4G; translation initiation factor 4G
E 100061920 EIF4B; eukaryotic translation initiation factor 4B isoform X3 K03258 EIF4B; translation initiation factor 4B
E 100062129 EIF4H; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 100057875 EIF4EBP1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 102150070 EIF4EBP2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 100532744 EIF4EBP3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 100058294 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 100050459 ANGEL2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 100058855 ANGEL1; protein angel homolog 1 isoform X3 K18729 ANGEL; protein angel
E 100066076 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 100147323 FXR2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 111771604 FMR1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 100071224 CYFIP2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 100063100 CYFIP1; LOW QUALITY PROTEIN: cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 100071362 GEMIN5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 100052628 TACC3; transforming acidic coiled-coil-containing protein 3 isoform X2 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 100068411 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100058918 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100061932 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100069076 CPEB2; LOW QUALITY PROTEIN: cytoplasmic polyadenylation element-binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100058480 DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 100064814 GIGYF2; GRB10-interacting GYF protein 2 isoform X2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 100056021 PABPC1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 100071995 PABPC5; polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 100070836 PABPC1L; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 100146775 PABPC1L2A; polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 100054235 PABPC4; polyadenylate-binding protein 4 isoform X3 K13126 PABPC; polyadenylate-binding protein
E 100071641 PABPC4L; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 100072210 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 100064807 PAIP1; polyadenylate-binding protein-interacting protein 1 isoform X3 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 100062144 PAIP2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 100060091 PAIP2B; polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 100051198 SKIV2L; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 100055871 DEAF1; deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 100629673 MCTS1; malignant T-cell-amplified sequence 1 isoform X1 K07575 MCTS; malignant T-cell-amplified sequence
E 100057416 malignant T-cell-amplified sequence 1-like K07575 MCTS; malignant T-cell-amplified sequence
E 100060440 DENR; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 100061100 APOBEC1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 100071844 A1CF; APOBEC1 complementation factor K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 100059063 PYM1; partner of Y14 and mago isoform X1 K14294 WIBG; partner of Y14 and mago
E 100034153 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100054206 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100066794 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100063330 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100068825 DAZAP1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 100070744 MSI2; RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 100053469 MSI1; RNA-binding protein Musashi homolog 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 100073159 HBS1L; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 100052424 PELO; protein pelota homolog K06965 PELO; protein pelota
E 100051357 PABPN1L; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 102149994 PABPN1; polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 100054938 ATP-dependent RNA helicase DDX19B isoform X2 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 100068576 ATP-dependent RNA helicase DDX19A isoform X1 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 100072417 DDX25; ATP-dependent RNA helicase DDX25 isoform X3 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7]
E 100060674 XAB2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 100058867 SARNP; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 100070733 RCC1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 100064277 LARP6; la-related protein 6 K18733 LARP6; la-related protein 6
E 111767794 PURA; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 106783026 PURB; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 100071034 POLDIP3; polymerase delta-interacting protein 3 isoform X3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 100049984 ZC3H11A; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 100050072 LENG8; leukocyte receptor cluster member 8 isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
E 100070621 PATL2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 100072563 ETF1; eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 100055960 GSPT1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 100060648 GSPT2; eukaryotic peptide chain release factor GTP-binding subunit ERF3B K03267 ERF3; peptide chain release factor subunit 3
E 100071059 UPF1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 100069342 UPF2; regulator of nonsense transcripts 2 isoform X2 K14327 UPF2; regulator of nonsense transcripts 2
E 100058559 UPF3B; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 100069294 UPF3A; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 100062224 PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 100062627 PPP2R1A; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 100070408 PPP2R1B; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X1 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 100070133 PPP2R2C; protein phosphatase 2, regulatory subunit B, gamma isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 100060957 PPP2R2B; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X5 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 100059955 PPP2R2A; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X2 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 100051737 PPP2R2D; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 100060079 PPP2R3B; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 100053302 PPP2R3A; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X3 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 100057766 PPP2R3C; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 100051948 PPP2R5E; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 100054880 PPP2R5D; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 100054977 PPP2R5C; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X6 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 100054440 PPP2R5A; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 100050735 PPP2R5B; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 100050143 SMG1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 100057746 SMG5; protein SMG5 K11125 SMG5; protein SMG5
E 100060172 SMG6; telomerase-binding protein EST1A isoform X2 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 100055474 SMG7; protein SMG7 isoform X5 K14409 SMG7; protein SMG7
E 100057203 SMG8; protein SMG8 K18734 SMG8; protein SMG8
E 100070296 SMG9; protein SMG9 K18735 SMG9; protein SMG9
E 100064814 GIGYF2; GRB10-interacting GYF protein 2 isoform X2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 100062130 SECISBP2; selenocysteine insertion sequence-binding protein 2 isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 100070100 SECISBP2L; selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 100066021 DHX34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 100147081 GTPBP1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 100058365 PUM3; pumilio homolog 3 isoform X1 K14844 PUF6; pumilio homology domain family member 6
E 100069548 MYO5A; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 100069562 MYO5C; unconventional myosin-Vc K10357 MYO5; myosin V
E 100069390 MYO5B; unconventional myosin-Vb K10357 MYO5; myosin V
E 100056101 BICD2; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 100064897 BICD1; protein bicaudal D homolog 1 isoform X5 K18739 BICD; protein bicaudal D
E 100056998 EXD1; piRNA biogenesis protein EXD1 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 100050139 ACTG1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 100033878 ACTB; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 100063306 MBP; myelin basic protein isoform X3 K17269 MBP; myelin basic protein
E 100056088 VIM; vimentin K07606 VIM; vimentin
E 100630794 metallothionein-1A-like K14739 MT1_2; metallothionein 1/2
E 100630858 metallothionein-1A-like K14739 MT1_2; metallothionein 1/2
E 100630653 metallothionein-1A isoform X1 K14739 MT1_2; metallothionein 1/2
E 106782966 metallothionein-2-like K14739 MT1_2; metallothionein 1/2
E 100630543 metallothionein-1B K14739 MT1_2; metallothionein 1/2
E 111767444 metallothionein-1A-like K14739 MT1_2; metallothionein 1/2
E 100068097 MYC; myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein
E 111769683 GDF1; LOW QUALITY PROTEIN: embryonic growth/differentiation factor 1 K05495 GDF1; growth differentiation factor 1
E 100066147 TBX6; T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 111772996 NANOS1; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 100055754 ZBP1; Z-DNA-binding protein 1 isoform X4 K12965 ZBP1; Z-DNA binding protein 1
E 100065608 KHSRP; far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 100066384 FUBP1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 100069755 FUBP3; far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein
E 100060464 EEF1A2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 100009682 EEF1A1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 100009686 EEF1G; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 100068539 HNRNPA2B1; heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 100056899 HAX1; HCLS1-associated protein X-1 isoform X1 K16220 HAX1; HCLS1-associated protein X-1
E 100629966 AGFG1; arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 100051157 STAU2; double-stranded RNA-binding protein Staufen homolog 2 isoform X6 K17597 STAU; double-stranded RNA-binding protein Staufen
E 100056924 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 100067926 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 100061673 PTBP1; polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 100068411 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100058918 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100061932 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100069076 CPEB2; LOW QUALITY PROTEIN: cytoplasmic polyadenylation element-binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 100066076 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 100147323 FXR2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 111771604 FMR1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 100071224 CYFIP2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 100063100 CYFIP1; LOW QUALITY PROTEIN: cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 100062163 PCBP2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 100050101 PCBP3; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 100060660 PCBP4; poly(rC)-binding protein 4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 100060513 CAPRIN1; caprin-1 isoform X2 K18743 CAPRIN1; caprin-1
E 100069757 CAPRIN2; caprin-2 isoform X1 K18744 CAPRIN2; caprin-2
E 100067336 YBX1; nuclease-sensitive element-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 111774794 uncharacterized protein LOC111774794 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 100051335 XRN1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 100069387 AGO3; protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 100069541 AGO2; protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 100055196 AGO4; protein argonaute-4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 100055148 AGO1; protein argonaute-1 isoform X2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 100057254 EIF4E2; eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 100066216 EIF4E; eukaryotic translation initiation factor 4E isoform X1 K03259 EIF4E; translation initiation factor 4E
E 100068758 EIF4E1B; eukaryotic translation initiation factor 4E type 1B isoform X2 K03259 EIF4E; translation initiation factor 4E
E 100071059 UPF1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 100058480 DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 100063116 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 100052950 MEX3B; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 100063974 MEX3A; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 100069803 MEX3C; RNA-binding E3 ubiquitin-protein ligase MEX3C K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 100629298 MEX3D; LOW QUALITY PROTEIN: RNA-binding protein MEX3D K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 100063473 FASTK; fas-activated serine/threonine kinase isoform X2 K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 100056958 LSM14A; protein LSM14 homolog A isoform X1 K18749 LSM14; protein LSM14
E 100057778 LSM14B; protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14
E 100050579 PCBP1; poly(rC)-binding protein 1 K12889 PCBP1; poly(rC)-binding protein 1
E 100062163 PCBP2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 100067336 YBX1; nuclease-sensitive element-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 111774794 uncharacterized protein LOC111774794 K09276 YBX1; Y-box-binding protein 1
E 100057361 WTIP; Wilms tumor protein 1-interacting protein isoform X1 K16682 AJUBA; LIM domain-containing protein
E 100056024 AJUBA; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 100065624 LIMD1; LIM domain-containing protein 1 isoform X1 K16682 AJUBA; LIM domain-containing protein
E 100061100 APOBEC1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 100070206 APOBEC3Z1b K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 100070250 APOBEC3Z2A-Z2; apolipoprotein B mRNA editing enzyme, catalytic polypeptide K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 100146802 DNA dC->dU-editing enzyme APOBEC-3G K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 100147481 A3F2; APOBEC3Z2c-Z2d K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 100302571 APOBEC3Z2e K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 100070262 APOBEC3H; DNA dC->dU-editing enzyme APOBEC-3H K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 100059089 MOV10; putative helicase MOV-10 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 100630531 PNRC2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 100073294 TNPO1; transportin-1 isoform X1 K18752 TNPO1; transportin-1
E 100050143 SMG1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 100057746 SMG5; protein SMG5 K11125 SMG5; protein SMG5
E 100060172 SMG6; telomerase-binding protein EST1A isoform X2 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 100055474 SMG7; protein SMG7 isoform X5 K14409 SMG7; protein SMG7
E 111775192 ZFP36; mRNA decay activator protein ZFP36 K15308 TTP; tristetraprolin
E 100063597 ZFP36L1; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 100069189 ZFP36L2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 100066260 LIN28B; protein lin-28 homolog B isoform X1 K18754 LIN28; protein lin-28
E 100071098 LIN28A; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 100053721 HTT; huntingtin isoform X1 K04533 HD; huntingtin
E 100064845 IPO8; importin-8 isoform X1 K18755 IPO8; importin-8
E 100072191 BICC1; protein bicaudal C homolog 1 isoform X1 K18756 BICC1; protein bicaudal C
E 100034153 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100054206 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100066794 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100063330 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100052828 PRKACB; cAMP-dependent protein kinase catalytic subunit beta isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 100064302 PRKACA; cAMP-dependent protein kinase catalytic subunit alpha isoform X3 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 100071380 LARP1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 100071865 LARP1B; la-related protein 1B isoform X13 K18757 LARP1; la-related protein 1
E 100057794 ATXN2; ataxin-2 isoform X1 K23625 ATXN2_2L; ataxin 2/2L
E 100066373 ATXN2L; ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 100073182 DCP2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 100051259 DCP1A; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 100055722 DCP1B; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 100057784 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 100058963 LSM2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 100629288 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 100070928 LSM4; U6 snRNA-associated Sm-like protein LSm4 isoform X2 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 100055259 LSM5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 100629585 LSM6; U6 snRNA-associated Sm-like protein LSm6 isoform X2 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 100060584 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 100071271 LSM8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 100055017 KLC4; kinesin light chain 4 K10407 KLC; kinesin light chain
E 100055290 KLC1; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 100147291 KLC3; kinesin light chain 3 isoform X1 K10407 KLC; kinesin light chain
E 100052297 KLC2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 100069548 MYO5A; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 100069562 MYO5C; unconventional myosin-Vc K10357 MYO5; myosin V
E 100069390 MYO5B; unconventional myosin-Vb K10357 MYO5; myosin V
E 100059285 tubulin alpha-1D chain K07374 TUBA; tubulin alpha
E 100051840 TUBA1A; tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 100051901 tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 100052388 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 100054576 TUBA8; tubulin alpha-8 chain isoform X2 K07374 TUBA; tubulin alpha
E 100065732 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 100059249 TUBA4A; tubulin alpha-4A chain K07374 TUBA; tubulin alpha
E 100146855 TUBAL3; tubulin alpha chain-like 3 K07374 TUBA; tubulin alpha
E 100059091 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 100072403 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 100068411 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100058918 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100061932 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100069076 CPEB2; LOW QUALITY PROTEIN: cytoplasmic polyadenylation element-binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100071362 GEMIN5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 100052628 TACC3; transforming acidic coiled-coil-containing protein 3 isoform X2 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 100069324 TNRC6A; trinucleotide repeat-containing gene 6A protein isoform X4 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 100070414 TNRC6B; trinucleotide repeat-containing gene 6B protein isoform X4 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 100058134 TNRC6C; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 100052554 CNOT1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 100062938 CNOT2; CCR4-NOT transcription complex subunit 2 isoform X2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 100049807 CNOT3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 100065026 CNOT4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 100059049 CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 100057912 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 100050103 CNOT7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 100059963 CNOT8; CCR4-NOT transcription complex subunit 8 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 100050138 uncharacterized protein KIAA0355 homolog isoform X1 K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 100064500 DIS3L2; DIS3-like exonuclease 2 isoform X1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 100052396 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X7 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 100061907 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 100053122 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG
E 100054048 BTG3; protein BTG3 K14443 TOB; protein Tob/BTG
E 100055713 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG
E 100056451 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG
E 100070324 BTG4; protein BTG4 isoform X1 K14443 TOB; protein Tob/BTG
E 100629230 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG
E 100058294 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 100058878 PATL1; protein PAT1 homolog 1 isoform X4 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 100051601 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 100053605 EDC4; enhancer of mRNA-decapping protein 4 isoform X2 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 100065765 NANOS2; nanos homolog 2 K18760 NANOS2; protein nanos 2
E 100063678 NANOS3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 100069342 UPF2; regulator of nonsense transcripts 2 isoform X2 K14327 UPF2; regulator of nonsense transcripts 2
E 100058559 UPF3B; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 100069294 UPF3A; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 100066782 TRIM21; E3 ubiquitin-protein ligase TRIM21 isoform X1 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 100056593 TRIM71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 100063883 POLR2G; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 100147679 EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 100629811 ZAR1L; ZAR1-like protein isoform X1 K18762 ZAR1; zygote arrest protein 1
E 111772705 ZAR1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 100060217 YTHDF1; YTH domain-containing family protein 1 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 100065448 YTHDF3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 100070667 YTHDF2; YTH domain-containing family protein 2 isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 100058604 TIAL1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 100050503 TIA1; nucleolysin TIA-1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 100056021 PABPC1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 100071995 PABPC5; polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 100070836 PABPC1L; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 100146775 PABPC1L2A; polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 100054235 PABPC4; polyadenylate-binding protein 4 isoform X3 K13126 PABPC; polyadenylate-binding protein
E 100071641 PABPC4L; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 100072210 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 100051157 STAU2; double-stranded RNA-binding protein Staufen homolog 2 isoform X6 K17597 STAU; double-stranded RNA-binding protein Staufen
E 100056924 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 100066076 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 100147323 FXR2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 111771604 FMR1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 100055754 ZBP1; Z-DNA-binding protein 1 isoform X4 K12965 ZBP1; Z-DNA binding protein 1
E 100060819 ELAVL1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 100060090 G3BP1; ras GTPase-activating protein-binding protein 1 isoform X2 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 100050765 G3BP2; ras GTPase-activating protein-binding protein 2 isoform X2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 100050507 EIF2A; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 100059693 EIF3B; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 100061902 EIF4A1; eukaryotic initiation factor 4A-I isoform X2 K03257 EIF4A; translation initiation factor 4A
E 100068164 EIF4A2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 100056586 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 100061920 EIF4B; eukaryotic translation initiation factor 4B isoform X3 K03258 EIF4B; translation initiation factor 4B
E 791239 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 100071378 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 100033975 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 K03260 EIF4G; translation initiation factor 4G
E 100058911 RPS6KA3; ribosomal protein S6 kinase alpha-3 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 100057166 RPS6KA1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 100050176 RPS6KA2; ribosomal protein S6 kinase alpha-2 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 100072397 RPS6KA6; ribosomal protein S6 kinase alpha-6 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 100057771 RACK1; receptor of activated protein C kinase 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 100068006 TRAF2; TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 100049009 NXF1; nuclear RNA export factor 1 isoform 2 K14284 NXF; nuclear RNA export factor
E 100060240 nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 100060140 nuclear RNA export factor 3 isoform X2 K14284 NXF; nuclear RNA export factor
E 100060201 nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 100060857 LOW QUALITY PROTEIN: nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 100067224 nuclear RNA export factor 3-like K14284 NXF; nuclear RNA export factor
E 111771475 nuclear RNA export factor 3-like K14284 NXF; nuclear RNA export factor
E 100062208 HDAC6; histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 100063561 TDRD3; tudor domain-containing protein 3 isoform X4 K18404 TDRD3; tudor domain-containing protein 3
E 100052331 LARP4; la-related protein 4 isoform X2 K18763 LARP4; la-related protein 4
E 100057616 LARP4B; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 100051259 DCP1A; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 100055722 DCP1B; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 100073182 DCP2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 100063116 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 100051601 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 100053605 EDC4; enhancer of mRNA-decapping protein 4 isoform X2 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 100058878 PATL1; protein PAT1 homolog 1 isoform X4 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 100057784 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 100058963 LSM2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 100629288 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 100070928 LSM4; U6 snRNA-associated Sm-like protein LSm4 isoform X2 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 100055259 LSM5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 100629585 LSM6; U6 snRNA-associated Sm-like protein LSm6 isoform X2 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 100060584 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 100071271 LSM8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 100051335 XRN1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 100050094 XRN2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 100064676 NUDT16; U8 snoRNA-decapping enzyme K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 100064530 DCPS; m7GpppX diphosphatase isoform X1 K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 100053580 HELZ; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:3.6.4.-]
C 3'-5' decay
D Core exosome factors
E 100070729 EXOSC1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4
E 100069734 EXOSC2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 100055153 EXOSC3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 100063419 EXOSC4; exosome complex component RRP41 isoform X1 K11600 RRP41; exosome complex component RRP41
E 100064997 EXOSC5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 111772793 EXOSC6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 100065722 EXOSC7; exosome complex component RRP42 isoform X2 K12589 RRP42; exosome complex component RRP42
E 100062567 EXOSC8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 100063958 EXOSC9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 100051938 DIS3; exosome complex exonuclease RRP44 isoform X1 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 100066072 DIS3L; DIS3-like exonuclease 1 isoform X3 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 100056644 EXOSC10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 100061974 C1D; nuclear nucleic acid-binding protein C1D isoform X1 K12592 C1D; exosome complex protein LRP1
E 100069947 MPHOSPH6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 100067542 DDX60L; probable ATP-dependent RNA helicase DDX60-like isoform X1 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
E 100067608 probable ATP-dependent RNA helicase DDX60 isoform X1 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
E 100067586 DDX60; probable ATP-dependent RNA helicase DDX60 isoform X1 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E 100071429 PAPD7; non-canonical poly(A) RNA polymerase PAPD7 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 100058454 PAPD5; non-canonical poly(A) RNA polymerase PAPD5 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 100055202 ZCCHC7; zinc finger CCHC domain-containing protein 7 isoform X1 K12597 AIR1_2; protein AIR1/2
E 100051945 MTREX; superkiller viralicidic activity 2-like 2 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 100051198 SKIV2L; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 100065001 TTC37; tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3
E 100050338 WDR61; WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 100059049 CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 100057912 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 100052554 CNOT1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 100062938 CNOT2; CCR4-NOT transcription complex subunit 2 isoform X2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 100049807 CNOT3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 100065026 CNOT4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 100050103 CNOT7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 100059963 CNOT8; CCR4-NOT transcription complex subunit 8 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 100058624 CNOT9; cell differentiation protein RCD1 homolog K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 100050817 CNOT10; CCR4-NOT transcription complex subunit 10 isoform X3 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 100052396 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X7 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 100061907 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 100050655 PARN; poly(A)-specific ribonuclease PARN isoform X2 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 100058786 PNLDC1; poly(A)-specific ribonuclease PNLDC1 isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 100054140 DHX36; ATP-dependent RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 100053122 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG
E 100054048 BTG3; protein BTG3 K14443 TOB; protein Tob/BTG
E 100055713 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG
E 100056451 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG
E 100070324 BTG4; protein BTG4 isoform X1 K14443 TOB; protein Tob/BTG
E 100629230 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG
E 100033981 CSF2; granulocyte-macrophage colony-stimulating factor precursor K05427 CSF2; granulocyte-macrophage colony-stimulating factor
E 100071468 NOCT; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 100147421 ERI1; 3'-5' exoribonuclease 1 isoform X1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 100629745 ERI1 exoribonuclease 2 isoform X2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 100064530 DCPS; m7GpppX diphosphatase isoform X1 K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 100058532 PDE12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 100050493 IREB2; iron-responsive element-binding protein 2 isoform X1 K22416 IREB2; iron-responsive element-binding protein 2
E 100053580 HELZ; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:3.6.4.-]
E 100062646 NRDE2; protein NRDE2 homolog K26109 NRDE2; nuclear exosome regulator NRDE2
E 100056508 SAMD4A; protein Smaug homolog 1 isoform X6 K27396 SMG; protein Smaug
E 100067511 SAMD4B; protein Smaug homolog 2 isoform X1 K27396 SMG; protein Smaug
C Other degradation factors
D RNases
E 100058995 RNASE1; ribonuclease pancreatic precursor K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 102148204 LOW QUALITY PROTEIN: non-secretory ribonuclease K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 106780845 RNASE4; ribonuclease 4 K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 100072707 ribonuclease 7 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 100629897 RNASE6; ribonuclease K6 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 100058807 RNASE11; probable ribonuclease 11 K16633 RNASE11; ribonuclease 11 [EC:3.1.27.-]
E 100069173 ZC3H12A; endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 100070081 ZC3H12C; probable ribonuclease ZC3H12C isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 100065633 ZC3H12B; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 100064737 ZC3H12D; probable ribonuclease ZC3H12D isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 100054238 DROSHA; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 100062339 REXO2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 100061187 ENO3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 100051879 ENO1; alpha-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 100052776 ENO2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 100052355 PNPT1; polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1 K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 100070818 PFKP; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 100056927 PFKL; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 100034116 PFKM; ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 100034032 HSPA9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 100055147 HSPD1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 100069734 EXOSC2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 100070729 EXOSC1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 100063419 EXOSC4; exosome complex component RRP41 isoform X1 K11600 RRP41; exosome complex component RRP41
E 100065722 EXOSC7; exosome complex component RRP42 isoform X2 K12589 RRP42; exosome complex component RRP42
D Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024