+F Repair protein KO
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DNA Repair and Recombination Proteins - Encephalitozoon cuniculi
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E ECU10_0530 uncharacterized protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E ECU05_1590 uncharacterized protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E ECU11_0140 uncharacterized protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E ECU08_0770 uncharacterized protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E ECU08_0880 uncharacterized protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
F ECU09_0430 uncharacterized protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F ECU09_0770 uncharacterized protein K02328 POLD2; DNA polymerase delta subunit 2
E DNA polymerase epsilon complex
F ECU10_1210 uncharacterized protein K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F ECU05_0330 uncharacterized protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
E ECU05_1030 uncharacterized protein K04802 PCNA; proliferating cell nuclear antigen
E ECU03_1080 uncharacterized protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E ECU02_1220 uncharacterized protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E ECU07_0160 DNA-3'-phosphatase K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F ECU01_0450 uncharacterized protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
E Cul4-DDB2 complex
F ECU01_1095 uncharacterized protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F ECU03_0290 uncharacterized protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F ECU10_0250 uncharacterized protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F ECU06_0600 DNA-directed RNA polymerase II core subunit RPB3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F ECU08_0765 DNA-directed RNA polymerase II subunit RPB4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F ECU07_0960 DNA-directed RNA polymerase subunit Rpb5 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F ECU08_0320 uncharacterized protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F ECU07_1750 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F ECU07_0840 DNA-directed RNA polymerase subunit RPB8 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F ECU11_1400 DNA-directed RNA polymerase II core subunit RPB9 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F ECU06_0320 DNA-directed RNA polymerase core subunit RPB10 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F ECU05_0275 DNA-directed RNA polymerase II core subunit RPB11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F ECU10_1045 uncharacterized protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F ECU01_1095 uncharacterized protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
E Other TCR factor
F ECU09_0410 uncharacterized protein K10841 ERCC6; DNA excision repair protein ERCC-6
F ECU09_0850 Elf1p-like protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E ECU01_1060 uncharacterized protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E ECU06_0200 uncharacterized protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E ECU04_0280 uncharacterized protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E ECU07_0880 uncharacterized protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E ECU01_0670 TFIIH/NER complex subunit TFB2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E ECU09_1615 uncharacterized protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E ECU02_1450 uncharacterized protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E ECU11_0220 uncharacterized protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E ECU10_0600 uncharacterized protein K07466 RFA1; replication factor A1
E ECU06_0360 uncharacterized protein K10739 RFA2; replication factor A2
D Other NER factors
E ECU10_1170 uncharacterized protein K10847 XPA; DNA-repair protein complementing XP-A cells
E ECU10_1330 nucleotide excision repair endonuclease NEF1 subunit RAD10 K10849 ERCC1; DNA excision repair protein ERCC-1
E ECU08_0760 uncharacterized protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E ECU09_1620 uncharacterized protein K10846 ERCC5; DNA excision repair protein ERCC-5
E ECU02_1220 uncharacterized protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E ECU03_0540 uncharacterized protein K08735 MSH2; DNA mismatch repair protein MSH2
E ECU10_0710 uncharacterized protein K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E ECU05_0300 uncharacterized protein K08734 MLH1; DNA mismatch repair protein MLH1
E ECU11_1260 uncharacterized protein K10858 PMS2; DNA mismatch repair protein PMS2
D DNA polymerase delta complex
E ECU09_0430 uncharacterized protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E ECU09_0770 uncharacterized protein K02328 POLD2; DNA polymerase delta subunit 2
D RPA (replication factor A)
E ECU10_0600 uncharacterized protein K07466 RFA1; replication factor A1
E ECU06_0360 uncharacterized protein K10739 RFA2; replication factor A2
D RFC (replication factor C)
E ECU05_1530 uncharacterized protein K10754 RFC1; replication factor C subunit 1
E ECU09_1330 uncharacterized protein K10755 RFC2_4; replication factor C subunit 2/4
E ECU10_0780i replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
E ECU02_0290 uncharacterized protein K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E ECU05_1030 uncharacterized protein K04802 PCNA; proliferating cell nuclear antigen
E ECU11_0760 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E ECU02_1220 uncharacterized protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E ECU05_1280 uncharacterized protein K10865 MRE11; double-strand break repair protein MRE11
E ECU07_0610i uncharacterized protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E ECU05_1280 uncharacterized protein K10865 MRE11; double-strand break repair protein MRE11
E ECU07_0610i uncharacterized protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
E ECU11_0820 uncharacterized protein K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E ECU11_0820 uncharacterized protein K04482 RAD51; DNA repair protein RAD51
D Rad52 family proteins
E ECU09_0930 recombinase RAD52 K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
D RecQ family DNA helicases
E ECU07_1130 uncharacterized protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E ECU07_1130 uncharacterized protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E ECU04_1070 uncharacterized protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
D RPA (replication factor A)
E ECU10_0600 uncharacterized protein K07466 RFA1; replication factor A1
E ECU06_0360 uncharacterized protein K10739 RFA2; replication factor A2
D Protein phosphatase 4
E ECU09_0980 uncharacterized protein K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E ECU10_1280 PP2A-like protein phosphatase K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
D AP-5 complex
D SMC5-SMC6 complex
E ECU11_2000 uncharacterized protein K22803 SMC5; structural maintenance of chromosomes protein 5
E ECU07_0390 uncharacterized protein K22804 SMC6; structural maintenance of chromosomes protein 6
E ECU08_1820 uncharacterized protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E ECU02_1390 uncharacterized protein K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E ECU04_0650 uncharacterized protein K10991 SWI5; DNA repair protein Swi5/Sae3
E ECU11_1030 uncharacterized protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
E ECU05_1280 uncharacterized protein K10865 MRE11; double-strand break repair protein MRE11
E ECU07_0610i uncharacterized protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
E ECU07_1130 uncharacterized protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E ECU04_1070 uncharacterized protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E ECU11_0820 uncharacterized protein K04482 RAD51; DNA repair protein RAD51
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
D ECU10_1310i ubiquitin-conjugating enzyme E2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
C Other TLS factors
D ECU05_1030 uncharacterized protein K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
D ECU09_1330 uncharacterized protein K10755 RFC2_4; replication factor C subunit 2/4
D ECU10_0780i replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
D ECU02_0290 uncharacterized protein K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
D ECU02_1130 uncharacterized protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D ECU03_0620 uncharacterized protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D ECU03_1010 uncharacterized protein K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
D ECU02_0420 Cef1p-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D ECU11_1970 uncharacterized protein K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D ECU06_0430 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D ECU10_0920 ribonucleoside diphosphate reductase K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D ECU06_0730 ribonucleoside diphosphate reductase K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E ECU10_0530 uncharacterized protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E ECU05_1590 uncharacterized protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E ECU11_0140 uncharacterized protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E ECU08_0880 uncharacterized protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E ECU06_1360 uncharacterized protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E ECU11_1550i DNA-(apurinic or apyrimidinic site) lyase APN1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D ECU06_0430 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024