+F Repair protein KO #

  DNA Repair and Recombination Proteins - Encephalitozoon cuniculi

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E ECU10_0530 uncharacterized protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E ECU05_1590 uncharacterized protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E ECU11_0140 uncharacterized protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E ECU08_0770 uncharacterized protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E ECU08_0880 uncharacterized protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex F ECU09_0430 uncharacterized protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] F ECU09_0770 uncharacterized protein K02328 POLD2; DNA polymerase delta subunit 2 E DNA polymerase epsilon complex F ECU10_1210 uncharacterized protein K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7] F ECU05_0330 uncharacterized protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7] E ECU05_1030 uncharacterized protein K04802 PCNA; proliferating cell nuclear antigen E ECU03_1080 uncharacterized protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E ECU02_1220 uncharacterized protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors E ECU07_0160 DNA-3'-phosphatase K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex F ECU01_0450 uncharacterized protein K10838 XPC; xeroderma pigmentosum group C-complementing protein E Cul4-DDB2 complex F ECU01_1095 uncharacterized protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex F ECU03_0290 uncharacterized protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] F ECU10_0250 uncharacterized protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] F ECU06_0600 DNA-directed RNA polymerase II core subunit RPB3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 F ECU08_0765 DNA-directed RNA polymerase II subunit RPB4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 F ECU07_0960 DNA-directed RNA polymerase subunit Rpb5 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 F ECU08_0320 uncharacterized protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 F ECU07_1750 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 F ECU07_0840 DNA-directed RNA polymerase subunit RPB8 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 F ECU11_1400 DNA-directed RNA polymerase II core subunit RPB9 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 F ECU06_0320 DNA-directed RNA polymerase core subunit RPB10 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 F ECU05_0275 DNA-directed RNA polymerase II core subunit RPB11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 F ECU10_1045 uncharacterized protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 E Cul4-CSA complex F ECU01_1095 uncharacterized protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] E Other TCR factor F ECU09_0410 uncharacterized protein K10841 ERCC6; DNA excision repair protein ERCC-6 F ECU09_0850 Elf1p-like protein K25829 ELOF1; transcription elongation factor 1 D TFIIH complex E ECU01_1060 uncharacterized protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E ECU06_0200 uncharacterized protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E ECU04_0280 uncharacterized protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 E ECU07_0880 uncharacterized protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 E ECU01_0670 TFIIH/NER complex subunit TFB2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 E ECU09_1615 uncharacterized protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit E ECU02_1450 uncharacterized protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E ECU11_0220 uncharacterized protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1 D RPA (replication factor A) E ECU10_0600 uncharacterized protein K07466 RFA1; replication factor A1 E ECU06_0360 uncharacterized protein K10739 RFA2; replication factor A2 D Other NER factors E ECU10_1170 uncharacterized protein K10847 XPA; DNA-repair protein complementing XP-A cells E ECU10_1330 nucleotide excision repair endonuclease NEF1 subunit RAD10 K10849 ERCC1; DNA excision repair protein ERCC-1 E ECU08_0760 uncharacterized protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] E ECU09_1620 uncharacterized protein K10846 ERCC5; DNA excision repair protein ERCC-5 E ECU02_1220 uncharacterized protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E ECU03_0540 uncharacterized protein K08735 MSH2; DNA mismatch repair protein MSH2 E ECU10_0710 uncharacterized protein K08737 MSH6; DNA mismatch repair protein MSH6 D MutL homologs E ECU05_0300 uncharacterized protein K08734 MLH1; DNA mismatch repair protein MLH1 E ECU11_1260 uncharacterized protein K10858 PMS2; DNA mismatch repair protein PMS2 D DNA polymerase delta complex E ECU09_0430 uncharacterized protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] E ECU09_0770 uncharacterized protein K02328 POLD2; DNA polymerase delta subunit 2 D RPA (replication factor A) E ECU10_0600 uncharacterized protein K07466 RFA1; replication factor A1 E ECU06_0360 uncharacterized protein K10739 RFA2; replication factor A2 D RFC (replication factor C) E ECU05_1530 uncharacterized protein K10754 RFC1; replication factor C subunit 1 E ECU09_1330 uncharacterized protein K10755 RFC2_4; replication factor C subunit 2/4 E ECU10_0780i replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5 E ECU02_0290 uncharacterized protein K10756 RFC3_5; replication factor C subunit 3/5 D Other MMR factors E ECU05_1030 uncharacterized protein K04802 PCNA; proliferating cell nuclear antigen E ECU11_0760 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-] E ECU02_1220 uncharacterized protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex E ECU05_1280 uncharacterized protein K10865 MRE11; double-strand break repair protein MRE11 E ECU07_0610i uncharacterized protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex E ECU05_1280 uncharacterized protein K10865 MRE11; double-strand break repair protein MRE11 E ECU07_0610i uncharacterized protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] D BRCA complex E ECU11_0820 uncharacterized protein K04482 RAD51; DNA repair protein RAD51 D RecA family proteins E ECU11_0820 uncharacterized protein K04482 RAD51; DNA repair protein RAD51 D Rad52 family proteins E ECU09_0930 recombinase RAD52 K10873 RAD52; DNA repair and recombination protein RAD52 D Rad54 family proteins D RecQ family DNA helicases E ECU07_1130 uncharacterized protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4] D Bloom's syndrome complex (BTR) E ECU07_1130 uncharacterized protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4] E ECU04_1070 uncharacterized protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] D RPA (replication factor A) E ECU10_0600 uncharacterized protein K07466 RFA1; replication factor A1 E ECU06_0360 uncharacterized protein K10739 RFA2; replication factor A2 D Protein phosphatase 4 E ECU09_0980 uncharacterized protein K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16] E ECU10_1280 PP2A-like protein phosphatase K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16] D AP-5 complex D SMC5-SMC6 complex E ECU11_2000 uncharacterized protein K22803 SMC5; structural maintenance of chromosomes protein 5 E ECU07_0390 uncharacterized protein K22804 SMC6; structural maintenance of chromosomes protein 6 E ECU08_1820 uncharacterized protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4 D Other HR factors E ECU02_1390 uncharacterized protein K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-] E ECU04_0650 uncharacterized protein K10991 SWI5; DNA repair protein Swi5/Sae3 E ECU11_1030 uncharacterized protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-] C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex E ECU05_1280 uncharacterized protein K10865 MRE11; double-strand break repair protein MRE11 E ECU07_0610i uncharacterized protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) E ECU07_1130 uncharacterized protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4] E ECU04_1070 uncharacterized protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] D FANCD2-I complex D Downstream FA components D Other FA pathway factors E ECU11_0820 uncharacterized protein K04482 RAD51; DNA repair protein RAD51 C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group D ECU10_1310i ubiquitin-conjugating enzyme E2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] C Other TLS factors D ECU05_1030 uncharacterized protein K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex D ECU09_1330 uncharacterized protein K10755 RFC2_4; replication factor C subunit 2/4 D ECU10_0780i replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5 D ECU02_0290 uncharacterized protein K10756 RFC3_5; replication factor C subunit 3/5 C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors D ECU02_1130 uncharacterized protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1] D ECU03_0620 uncharacterized protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1] D ECU03_1010 uncharacterized protein K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex D ECU02_0420 Cef1p-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1 D ECU11_1970 uncharacterized protein K12862 PLRG1; pleiotropic regulator 1 C Modulation of nucleotide pools D ECU06_0430 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D ECU10_0920 ribonucleoside diphosphate reductase K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1] D ECU06_0730 ribonucleoside diphosphate reductase K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E ECU10_0530 uncharacterized protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E ECU05_1590 uncharacterized protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E ECU11_0140 uncharacterized protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E ECU08_0880 uncharacterized protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E ECU06_1360 uncharacterized protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E ECU11_1550i DNA-(apurinic or apyrimidinic site) lyase APN1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins D RecFOR pathway proteins D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway E Facilitator E Supressor B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D ECU06_0430 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024