+F Repair protein KO #

  DNA Repair and Recombination Proteins - Escherichia coli O139:H28 E24377A (ETEC)

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D EcE24377A_0733 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E EcE24377A_2867 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E EcE24377A_3307 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E EcE24377A_1842 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D EcE24377A_0101 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EcE24377A_4141 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D EcE24377A_2512 ada; regulatory protein Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D EcE24377A_0733 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D EcE24377A_2511 alkB; alkylated DNA repair protein AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E EcE24377A_2867 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E EcE24377A_3533 mug; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E EcE24377A_2361 alkA; DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E EcE24377A_3307 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E EcE24377A_4044 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E EcE24377A_4136 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E EcE24377A_0740 nei; endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E EcE24377A_1842 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E EcE24377A_1972 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E EcE24377A_2456 nfo; endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E EcE24377A_4541 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E EcE24377A_3218 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E EcE24377A_4148 ligB; NAD(+)-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E EcE24377A_2698 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E EcE24377A_4382 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E EcE24377A_4610 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E EcE24377A_0842 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E EcE24377A_2146 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E EcE24377A_1963 cho; excinuclease cho K05984 cho; excinuclease Cho [EC:3.1.25.-] E EcE24377A_4332 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E EcE24377A_3362 helicase, UvrD family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E EcE24377A_4382 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E EcE24377A_4148 ligB; NAD(+)-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E EcE24377A_2698 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F EcE24377A_4528 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F EcE24377A_4529 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F EcE24377A_3778 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F EcE24377A_4152 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F EcE24377A_1236 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E EcE24377A_3030 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E EcE24377A_4728 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E EcE24377A_3151 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E EcE24377A_2302 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E EcE24377A_0453 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E EcE24377A_2074 exoX; exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E EcE24377A_0188 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E EcE24377A_4211 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E EcE24377A_4830 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E EcE24377A_0666 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E EcE24377A_1220 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E EcE24377A_0221 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E EcE24377A_0507 dnaX; DNA polymerase III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E EcE24377A_4967 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E EcE24377A_2071 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E EcE24377A_4148 ligB; NAD(+)-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E EcE24377A_2698 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E EcE24377A_4332 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E EcE24377A_3362 helicase, UvrD family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E EcE24377A_4611 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E EcE24377A_D0002 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E EcE24377A_3857 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E EcE24377A_2191 vsr; very short patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E EcE24377A_3140 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E EcE24377A_3142 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E EcE24377A_3139 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E EcE24377A_2983 recA; protein RecA K03553 recA; recombination protein RecA E EcE24377A_2091 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E EcE24377A_2090 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E EcE24377A_2093 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E EcE24377A_0821 rusA; crossover junction endodeoxyribonuclease RusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E EcE24377A_1435 crossover junction endodeoxyribonuclease RusA homolog K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E EcE24377A_1267 crossover junction endodeoxyribonuclease RusA homolog K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E EcE24377A_4471 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E EcE24377A_4762 priB; primosomal replication protein N K02686 priB; primosomal replication protein N E EcE24377A_0503 priC; primosomal replication protein N'' K04067 priC; primosomal replication protein N'' E EcE24377A_4955 dnaT; primosomal protein 1 K02317 dnaT; DNA replication protein DnaT E EcE24377A_2302 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E EcE24377A_0424 sbcC; nuclease SbcCD, C subunit K03546 sbcC; DNA repair protein SbcC/Rad50 E EcE24377A_0425 sbcD; nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E EcE24377A_2983 recA; protein RecA K03553 recA; recombination protein RecA E EcE24377A_4988 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E EcE24377A_4210 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E EcE24377A_4156 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E EcE24377A_3218 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E EcE24377A_2851 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E EcE24377A_0510 recR; recombination protein RecR K06187 recR; recombination protein RecR E EcE24377A_2900 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E EcE24377A_0420 putative recombination-associated exonuclease RdgC K03554 rdgC; recombination associated protein RdgC E EcE24377A_2091 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E EcE24377A_2090 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E EcE24377A_2093 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E EcE24377A_3057 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E EcE24377A_2482 putative helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E EcE24377A_0424 sbcC; nuclease SbcCD, C subunit K03546 sbcC; DNA repair protein SbcC/Rad50 E EcE24377A_0425 sbcD; nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 E EcE24377A_4836 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F EcE24377A_2526 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F EcE24377A_4209 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F EcE24377A_1474 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F EcE24377A_4543 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha F EcE24377A_0476 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F EcE24377A_3218 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F EcE24377A_2851 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F EcE24377A_0510 recR; recombination protein RecR K06187 recR; recombination protein RecR F EcE24377A_4148 ligB; NAD(+)-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F EcE24377A_2698 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F EcE24377A_3746 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F EcE24377A_1931 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F EcE24377A_1009 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F EcE24377A_2302 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F EcE24377A_4343 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F EcE24377A_4610 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F EcE24377A_0842 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B F EcE24377A_1386 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS F EcE24377A_3387 DNA-binding protein H-NS homolog K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D EcE24377A_0265 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D EcE24377A_1329 umuC; protein UmuC K03502 umuC; DNA polymerase V D EcE24377A_1328 umuD; protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D EcE24377A_2983 recA; protein RecA K03553 recA; recombination protein RecA D EcE24377A_4596 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D EcE24377A_2900 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D EcE24377A_0062 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D EcE24377A_4611 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D EcE24377A_D0002 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D EcE24377A_4147 DNA-damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D D EcE24377A_1184 dinI; DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D EcE24377A_2982 recX; regulatory protein RecX K03565 recX; regulatory protein D EcE24377A_3886 putative transposase, YhgA K01157 rpnA; recombination-promoting nuclease RpnA [EC:3.1.21.-] D EcE24377A_2599 conserved hypothetical protein K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-] D EcE24377A_0135 conserved hypothetical protein K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-] D EcE24377A_2542 conserved hypothetical protein K24090 rpnE; recombination-promoting nuclease RpnE B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D EcE24377A_4288 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D EcE24377A_1077 helD; helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D EcE24377A_0290 helicase, UvrD family K03658 helD; DNA helicase IV [EC:5.6.2.4] D EcE24377A_0866 putative ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D EcE24377A_2034 conserved hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D EcE24377A_1865 lhr; DEAD/DEAH box helicase family protein Lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D EcE24377A_0101 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D EcE24377A_4141 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D EcE24377A_2531 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D EcE24377A_2956 nrdE; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D EcE24377A_2532 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D EcE24377A_2957 nrdF; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024