+F Repair protein KO
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DNA Repair and Recombination Proteins - Escherichia coli clone D i2
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D i02_1634 ogt; O-6-alkylguanine-DNA:cysteine-protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D i02_0758 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E i02_2900 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E i02_3266 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E i02_1846 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D i02_0108 mutT; nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D i02_4126 dut; deoxyuridine triphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D i02_1634 ogt; O-6-alkylguanine-DNA:cysteine-protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D i02_2554 ada; ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D i02_0758 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D i02_2553 alkB; alkylated DNA repair protein AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E i02_2900 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E i02_3516 ygjF; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E i02_2393 alkA; 3-methyl-adenine DNA glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E i02_3266 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E i02_4035 tag; 3-methyl-adenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E i02_4121 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E i02_0764 nei; endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E i02_1846 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E i02_1969 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E i02_2493 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E i02_4545 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E i02_3192 recJ; ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E i02_2743 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E i02_4133 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E i02_4402 xni; exonuclease IX K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E i02_4632 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E i02_0826 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E i02_2142 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E i02_1960 ydjQ; nucleotide excision repair endonuclease K05984 cho; excinuclease Cho [EC:3.1.25.-]
E i02_4327 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E i02_4402 xni; exonuclease IX K02335 polA; DNA polymerase I [EC:2.7.7.7]
E i02_2743 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E i02_4133 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F i02_4534 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F i02_4535 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F i02_3738 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F i02_4136 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F i02_1269 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E i02_3023 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E i02_4762 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
E i02_3147 mutH; DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH
D DNA exonucleases
E i02_2340 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E i02_2824 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E i02_0514 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
E i02_2072 exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D DNA polymerase III holoenzyme
E i02_0204 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E i02_4216 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E i02_4863 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E i02_0700 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E i02_1253 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E i02_0234 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E i02_1106 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E i02_0565 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
E i02_4967 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
E i02_2070 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D DNA ligase
E i02_2743 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E i02_4133 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E i02_4327 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E i02_4633 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E i02_0252 putative single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E i02_3829 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E i02_2192 vsr; very short patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E i02_3136 recB; exonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E i02_3138 recC; exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E i02_3135 recD; exonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E i02_2984 recA; recombinase A K03553 recA; recombination protein RecA
E i02_2091 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E i02_2090 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E i02_2093 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E i02_1392 rus; endodeoxyribonuclease RUS K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
E i02_1303 hypothetical protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
E i02_4480 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E i02_4793 priB; primosomal replication protein N K02686 priB; primosomal replication protein N
E i02_0562 priC; primosomal replication protein N'' K04067 priC; primosomal replication protein N''
E i02_4957 dnaT; primosomal protein DnaI K02317 dnaT; DNA replication protein DnaT
E i02_2340 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E i02_0487 sbcC; exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E i02_0488 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E i02_2984 recA; recombinase A K03553 recA; recombination protein RecA
E i02_4986 sms; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E i02_4215 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
E i02_4139 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E i02_3192 recJ; ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E i02_2884 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E i02_0567 recR; recombination protein RecR K06187 recR; recombination protein RecR
E i02_2933 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E i02_0484 rdgC; recombination associated protein K03554 rdgC; recombination associated protein RdgC
E i02_2091 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E i02_2090 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E i02_2093 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E i02_2521 yejH; hypothetical protein K19789 radD; DNA repair protein RadD
D Archaeal homologous recombinant proteins
E i02_0487 sbcC; exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E i02_0488 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E i02_4867 yjgR; hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F i02_2571 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F i02_4214 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F i02_1571 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F i02_4547 hupA; transcriptional regulator HU subunit alpha K05787 hupA; DNA-binding protein HU-alpha
F i02_0534 hupB; transcriptional regulator HU subunit beta K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F i02_1283 recE; exodeoxyribonuclease VIII K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-]
F i02_3192 recJ; ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F i02_2884 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F i02_0567 recR; recombination protein RecR K06187 recR; recombination protein RecR
F i02_2743 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
F i02_4133 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F i02_3709 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F i02_1931 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F i02_0962 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F i02_2340 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F i02_4338 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F i02_3894 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F i02_4632 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F i02_0826 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F i02_1532 hns; global DNA-binding transcriptional factor K03746 hns; DNA-binding protein H-NS
F i02_2227 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D i02_0358 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D i02_1463 umuC; DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V
D i02_1462 umuD; DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D i02_2984 recA; recombinase A K03553 recA; recombination protein RecA
D i02_4599 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D i02_2933 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D i02_0062 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D i02_4633 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D i02_0252 putative single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D i02_4131 dinD; DNA-damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D
D i02_1213 dinI; DNA damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D i02_2983 recX; recombination regulator RecX K03565 recX; regulatory protein
D i02_0149 yadD; hypothetical protein K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-]
D i02_4937 yfcI; hypothetical protein K24089 rpnD; recombination-promoting nuclease RpnD [EC:3.1.21.-]
D i02_2585 yfaD; hypothetical protein K24090 rpnE; recombination-promoting nuclease RpnE
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D i02_4289 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D i02_1007 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D i02_2032 ATP-dependent helicase yoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D i02_0848 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D i02_0108 mutT; nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D i02_4126 dut; deoxyuridine triphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D i02_2958 nrdE; ribonucleotide-diphosphate reductase subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D i02_2575 nrdA; ribonucleotide-diphosphate reductase subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D i02_2576 nrdB; ribonucleotide-diphosphate reductase subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D i02_2959 nrdF; ribonucleotide-diphosphate reductase subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024