+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Eremothecium cymbalariae
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E Ecym_2270 Hypothetical protein K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E Ecym_2566 Hypothetical protein K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22]
E Ecym_3371 Hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E Ecym_2188 Hypothetical protein K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50]
E Ecym_2161 Hypothetical protein K01098 CET1; polynucleotide 5'-triphosphatase [EC:3.6.1.74]
D Cap binding complex
E Ecym_6080 hypothetical protein K12882 NCBP1; nuclear cap-binding protein subunit 1
E Ecym_2246 Hypothetical protein K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
E Ecym_2382 Hypothetical protein K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E Ecym_4124 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E Ecym_3197 Hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E Ecym_3113 Hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E Ecym_2619 Hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E Ecym_7155 hypothetical protein K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E Ecym_4567 hypothetical protein K15541 MPE1; protein MPE1
E Ecym_2026 Hypothetical protein K15542 PFS2; polyadenylation factor subunit 2
E Ecym_3389 Hypothetical protein K14962 WDR82; COMPASS component SWD2
E Ecym_4164 hypothetical protein K15543 REF2; RNA end formation protein 2
E Ecym_2341 Hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E Ecym_4083 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E Ecym_2244 Hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E Ecym_6473 hypothetical protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E Ecym_7344 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E Ecym_7345 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E Ecym_3422 Hypothetical protein K14408 CSTF3; cleavage stimulation factor subunit 3
E Ecym_5027 hypothetical protein K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E Ecym_1209 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E Ecym_4216 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
E Ecym_5455 hypothetical protein K11097 SNRPE; small nuclear ribonucleoprotein E
E Ecym_2813 Hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
E Ecym_1454 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
E Ecym_3113 Hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E Ecym_7344 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E Ecym_7345 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E Ecym_5027 hypothetical protein K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E Ecym_6273 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E Ecym_4073 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E Ecym_1017 hypothetical protein K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E Ecym_6027 hypothetical protein K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
D Ecym_4035 hypothetical protein K13102 KIN; DNA/RNA-binding protein KIN17
D Ecym_3055 Hypothetical protein K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E Ecym_6049 hypothetical protein K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E Ecym_4755 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
D TREX complex
E Ecym_6378 hypothetical protein K12879 THOC2; THO complex subunit 2
E Ecym_4240 hypothetical protein K18712 HPR1; THO complex subunit HPR1
E Ecym_5093 hypothetical protein K18713 THP2; THO complex subunit THP2
E Ecym_1157 hypothetical protein K18714 MFT1; THO complex subunit MFT1
D TREX-2 complex
E Ecym_5273 hypothetical protein K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E Ecym_5526 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E Ecym_3460 Hypothetical protein K11368 ENY2; enhancer of yellow 2 transcription factor
E Ecym_2367 Hypothetical protein K16466 CETN3; centrin-3
E Ecym_4232 hypothetical protein K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E Ecym_4018 hypothetical protein K09291 TPR; nucleoprotein TPR
E Ecym_7149 hypothetical protein K14298 RAE1; mRNA export factor
E Ecym_4644 hypothetical protein K14004 SEC13; protein transport protein SEC13
E Ecym_1378 hypothetical protein K14304 NUP85; nuclear pore complex protein Nup85
E Ecym_4436 hypothetical protein K14308 NUP54; nuclear pore complex protein Nup54
E Ecym_8240 Hypothetical protein K14306 NUP62; nuclear pore complex protein Nup62
E Ecym_2290 Hypothetical protein K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E Ecym_3365 Hypothetical protein K14301 NUP107; nuclear pore complex protein Nup107
E Ecym_4045 hypothetical protein K14300 NUP133; nuclear pore complex protein Nup133
E Ecym_4674 hypothetical protein K14312 NUP155; nuclear pore complex protein Nup155
E Ecym_4564 hypothetical protein K14303 NUP160; nuclear pore complex protein Nup160
E Ecym_8239 Hypothetical protein K14310 NUP205; nuclear pore complex protein Nup205
E Ecym_8382 Hypothetical protein K14307 NUPL1; nucleoporin p58/p45
E Ecym_4109 hypothetical protein K14315 NDC1; nucleoporin NDC1
E Ecym_2258 Hypothetical protein K14299 SEH1; nucleoporin SEH1
E Ecym_3291 Hypothetical protein K18715 NUP159; nucleoporin NUP159
E Ecym_4169 hypothetical protein K18716 NUP42; nucleoporin NUP42
E Ecym_5608 hypothetical protein K18717 ASM4; nucleoporin ASM4
E Ecym_6173 hypothetical protein K18718 NUP60; nucleoporin NUP60
E Ecym_6290 hypothetical protein K18719 NUP82; nucleoporin NUP82
E Ecym_2236 Hypothetical protein K18720 NUP145; nucleoporin NUP145
E Ecym_8342 Hypothetical protein K18722 NUP2; nucleoporin NUP2
E Ecym_2367 Hypothetical protein K16466 CETN3; centrin-3
E Ecym_5119 hypothetical protein K18723 GLE1; nucleoporin GLE1
E Ecym_2373 Hypothetical protein K14284 NXF; nuclear RNA export factor
E Ecym_3235 Hypothetical protein K14543 MTR2; mRNA transport regulator MTR2
E Ecym_6073 hypothetical protein K18725 POM152; nucleoporin POM152
E Ecym_4393 hypothetical protein K14017 SNL1; HSP70 co-chaperone SNL1
D Ran-mediated transport factors
E Ecym_3097 Hypothetical protein K07936 RAN; GTP-binding nuclear protein Ran
E Ecym_5612 hypothetical protein K18726 FAF2; FAS-associated factor 2
E Ecym_8037 Hypothetical protein K13525 VCP; transitional endoplasmic reticulum ATPase
E Ecym_2068 Hypothetical protein K14290 XPO1; exportin-1
E Ecym_1469 hypothetical protein K14319 RANGAP1; Ran GTPase-activating protein 1
E Ecym_4077 hypothetical protein K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E Ecym_2022 Hypothetical protein K03259 EIF4E; translation initiation factor 4E
E Ecym_5196 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E Ecym_7208 hypothetical protein K03258 EIF4B; translation initiation factor 4B
E Ecym_8298 Hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E Ecym_7080 hypothetical protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E Ecym_5562 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E Ecym_5574 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E Ecym_3257 Hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E Ecym_4766 hypothetical protein K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6]
E Ecym_4474 hypothetical protein K07575 MCTS; malignant T-cell-amplified sequence
E Ecym_7369 hypothetical protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E Ecym_2050 Hypothetical protein K14411 MSI; RNA-binding protein Musashi
E Ecym_1285 hypothetical protein K06965 PELO; protein pelota
E Ecym_4483 hypothetical protein K14396 PABPN1; polyadenylate-binding protein 2
E Ecym_5488 hypothetical protein K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E Ecym_4331 hypothetical protein K18732 SARNP; SAP domain-containing ribonucleoprotein
E Ecym_2251 Hypothetical protein K11493 RCC1; regulator of chromosome condensation
E Ecym_7163 hypothetical protein K23802 LENG8; SAC3 family protein LENG8/THP3
E Ecym_3620 Hypothetical protein K23799 YRA2; RNA annealing protein YRA2
C Surveillance factors
D Surveillance complex
E Ecym_5327 hypothetical protein K03265 ETF1; peptide chain release factor subunit 1
E Ecym_8169 Hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
D Protein phosphatase 2A
E Ecym_8052 Hypothetical protein K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E Ecym_2638 Hypothetical protein K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E Ecym_6211 hypothetical protein K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E Ecym_2621 Hypothetical protein K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E Ecym_7080 hypothetical protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
C Factors involved in mRNA localization
D Cargo complex
E Ecym_6105 hypothetical protein K18736 SHE2; SWI5-dependent HO expression protein 2
E Ecym_3434 Hypothetical protein K18737 SHE3; SWI5-dependent HO expression protein 3
E Ecym_3593 Hypothetical protein K14844 PUF6; pumilio homology domain family member 6
E Ecym_7443 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E Ecym_2278 Hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E Ecym_5067 hypothetical protein K10357 MYO5; myosin V
E Ecym_3236 Hypothetical protein K18658 ASH1; transcriptional regulatory protein ASH1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E Ecym_3450 Hypothetical protein K03231 EEF1A; elongation factor 1-alpha
E Ecym_2548 Hypothetical protein K03233 EEF1G; elongation factor 1-gamma
E Ecym_3413 Hypothetical protein K03233 EEF1G; elongation factor 1-gamma
D Other mRNA localization factors
E Ecym_3186 Hypothetical protein K18748 SSD1; protein SSD1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E Ecym_8383 Hypothetical protein K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E Ecym_2022 Hypothetical protein K03259 EIF4E; translation initiation factor 4E
E Ecym_8298 Hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E Ecym_4646 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E Ecym_4444 hypothetical protein K18749 LSM14; protein LSM14
E Ecym_5255 hypothetical protein K18752 TNPO1; transportin-1
E Ecym_8095 Hypothetical protein K04345 PKA; protein kinase A [EC:2.7.11.11]
E Ecym_2203 Hypothetical protein K04345 PKA; protein kinase A [EC:2.7.11.11]
E Ecym_1041 hypothetical protein K18757 LARP1; la-related protein 1
D P-body specific factors
E Ecym_8207 Hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E Ecym_2003 Hypothetical protein K12612 DCP1; mRNA-decapping enzyme subunit 1
E Ecym_5215 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E Ecym_6224 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E Ecym_1162 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E Ecym_7144 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E Ecym_5554 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E Ecym_4639 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E Ecym_6383 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E Ecym_7382 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E Ecym_5067 hypothetical protein K10357 MYO5; myosin V
E Ecym_1387 hypothetical protein K07374 TUBA; tubulin alpha
E Ecym_6036 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E Ecym_4726 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E Ecym_3456 Hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E Ecym_4325 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E Ecym_7354 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E Ecym_7005 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E Ecym_2240 Hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E Ecym_5640 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E Ecym_2509 Hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E Ecym_1195 hypothetical protein K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2
E Ecym_1354 hypothetical protein K12615 EDC3; enhancer of mRNA-decapping protein 3
E Ecym_8169 Hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E Ecym_4540 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E Ecym_4517 hypothetical protein K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E Ecym_3344 Hypothetical protein K13201 TIA1; nucleolysin TIA-1/TIAR
E Ecym_5562 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E Ecym_5574 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E Ecym_6134 hypothetical protein K15026 EIF2A; translation initiation factor 2A
E Ecym_5021 hypothetical protein K03253 EIF3B; translation initiation factor 3 subunit B
E Ecym_5196 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E Ecym_4755 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E Ecym_7208 hypothetical protein K03258 EIF4B; translation initiation factor 4B
E Ecym_6098 hypothetical protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E Ecym_2373 Hypothetical protein K14284 NXF; nuclear RNA export factor
E Ecym_3324 Hypothetical protein K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E Ecym_2003 Hypothetical protein K12612 DCP1; mRNA-decapping enzyme subunit 1
E Ecym_8207 Hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E Ecym_4646 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E Ecym_1195 hypothetical protein K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2
E Ecym_1354 hypothetical protein K12615 EDC3; enhancer of mRNA-decapping protein 3
E Ecym_2509 Hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E Ecym_5215 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E Ecym_6224 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E Ecym_1162 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E Ecym_7144 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E Ecym_5554 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E Ecym_4639 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E Ecym_6383 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E Ecym_7382 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E Ecym_8383 Hypothetical protein K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E Ecym_5486 hypothetical protein K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D Other 5'-3' decay factors
E Ecym_3126 Hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
C 3'-5' decay
D Core exosome factors
E Ecym_6482 hypothetical protein K07573 CSL4; exosome complex component CSL4
E Ecym_3224 Hypothetical protein K03679 RRP4; exosome complex component RRP4
E Ecym_2015 Hypothetical protein K03681 RRP40; exosome complex component RRP40
E Ecym_8266 Hypothetical protein K11600 RRP41; exosome complex component RRP41
E Ecym_1249 hypothetical protein K12590 RRP46; exosome complex component RRP46
E Ecym_6203 hypothetical protein K12587 MTR3; exosome complex component MTR3
E Ecym_3358 Hypothetical protein K12589 RRP42; exosome complex component RRP42
E Ecym_8138 Hypothetical protein K12586 RRP43; exosome complex component RRP43
E Ecym_4741 hypothetical protein K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E Ecym_2715 Hypothetical protein K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E Ecym_3030 Hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E Ecym_8001 Hypothetical protein K12592 C1D; exosome complex protein LRP1
E Ecym_2092 Hypothetical protein K12594 MPP6; M-phase phosphoprotein 6, fungi type
D TRAMP complex
E Ecym_7460 hypothetical protein K12597 AIR1_2; protein AIR1/2
E Ecym_6303 hypothetical protein K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
E Ecym_3523 Hypothetical protein K12596 TRF5; poly(A) RNA polymerase
D Ski complex
E Ecym_3257 Hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E Ecym_2820 Hypothetical protein K12600 SKI3; superkiller protein 3
E Ecym_1202 hypothetical protein K12601 SKI8; superkiller protein 8
D Ccr4-NOT complex
E Ecym_7354 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E Ecym_6036 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E Ecym_4726 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E Ecym_3456 Hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E Ecym_4325 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E Ecym_7005 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E Ecym_3537 Hypothetical protein K12606 RCD1; CCR4-NOT transcription complex subunit 9
E Ecym_1500 hypothetical protein K12608 CAF16; CCR4-NOT complex subunit CAF16
E Ecym_1071 hypothetical protein K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120
D Pan complex
E Ecym_2240 Hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E Ecym_5640 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E Ecym_3126 Hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E Ecym_5026 hypothetical protein K27407 VTS1; RNA-binding protein VTS1
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E Ecym_1482 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
E Ecym_1507 hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E Ecym_5102 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E Ecym_3522 Hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E Ecym_2114 Hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E Ecym_2763 Hypothetical protein K04043 dnaK; molecular chaperone DnaK
E Ecym_3578 Hypothetical protein K04043 dnaK; molecular chaperone DnaK
E Ecym_3140 Hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E Ecym_4757 hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E Ecym_3224 Hypothetical protein K03679 RRP4; exosome complex component RRP4
E Ecym_6482 hypothetical protein K07573 CSL4; exosome complex component CSL4
D Cofactors
E Ecym_8266 Hypothetical protein K11600 RRP41; exosome complex component RRP41
E Ecym_3358 Hypothetical protein K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024