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Transfer RNA Biogenesis - Encephalitozoon romaleae
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
D EROM_081200 RNase P subunit p30-like protein K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D EROM_101590 RNase P subunit Rpr2 K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D EROM_060370 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D EROM_031320 tRNA nucleotidyltransferase/poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D EROM_010940 RtcB-like protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D EROM_020890 hypothetical protein K24956 ZBTB8OS; protein archease
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
D EROM_041590 GTP-binding nuclear protein K07936 RAN; GTP-binding nuclear protein Ran
D EROM_110110 exportin 1 K14290 XPO1; exportin-1
D EROM_041080 translation elongation factor EF-1 alpha K03231 EEF1A; elongation factor 1-alpha
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D EROM_021120 glutamyl tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D EROM_021270 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D EROM_110980 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D EROM_060190 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D EROM_110760 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D EROM_101350 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D EROM_080480 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D EROM_040520 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D EROM_060730 aspartyl-tRNA synthetase K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12]
D EROM_041540 methionyl-tRNA synthetase-like protein K15437 AIMP1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1
C Other AARSs
D EROM_021400 alanyl-tRNA synthethase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D EROM_091670 asparagine-tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D EROM_101690 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D EROM_071490 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D EROM_040690 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D EROM_080410 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D EROM_041120 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D EROM_060560 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D EROM_071580 phenylalanyl-tRNA synthetase subunit beta K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D EROM_040840 phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D EROM_051150 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D EROM_110390 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
C AARS associated factors
B tRNA modification factors
C Deaminases
D EROM_092000 deoxycytidylate deaminase K15441 TAD2; tRNA-specific adenosine deaminase 2 [EC:3.5.4.-]
D EROM_091400 hypothetical protein K15442 TAD3; tRNA-specific adenosine deaminase 3
C Dihydorouridine synthases
D EROM_071530 tRNA-dihydrouridine synthase K05542 DUS1; tRNA-dihydrouridine synthase 1 [EC:1.3.1.88]
C Methylthiotransferase
C Methyltransferases
D EROM_081450 N2,N2-dimethylguanosine tRNA methyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D EROM_080320 putative methyltransferase K15335 NSUN2; tRNA (cytosine34-C5)-methyltransferase [EC:2.1.1.203]
D EROM_040550 putative methyltransferase K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D EROM_091320 ribosomal RNA methyltransferase K14864 FTSJ1; tRNA (cytidine32/guanosine34-2'-O)-methyltransferase [EC:2.1.1.205]
D EROM_111410 putative S-adenosylmethionine-dependent K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D EROM_090900 putative methyltransferase K15444 TRM9; tRNA (uracil-5-)-methyltransferase TRM9 [EC:2.1.1.229]
D EROM_081180 hypothetical protein K15448 TRM112; multifunctional methyltransferase subunit TRM112
C Psudouridine synthases
D EROM_040830 pseudouridine synthase 2 K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D EROM_111500 tRNA pseudouridine synthase A K01855 PUS3; tRNA pseudouridine38/39 synthase [EC:5.4.99.45]
D EROM_061200 pseudouridine synthase-like protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D EROM_050690 pseudouridylate synthase K14655 RIB2; tRNA pseudouridine32 synthase / 2,5-diamino-6-(5-phospho-D-ribitylamino)-pyrimidin-4(3H)-one deaminase [EC:5.4.99.28]
C Thiolation factors
D EROM_031110 Adenine nucleotide alpha hydrolase K14168 CTU1; cytoplasmic tRNA 2-thiolation protein 1 [EC:2.7.7.-]
D EROM_111660 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D EROM_030680 ubiquitin-like protein K12161 URM1; ubiquitin related modifier 1
C KEOPS/EKC complex
D EROM_060310 O-sialoglycoprotein endopeptidase/protein kinase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D EROM_090120 O-sialoglycoprotein endopeptidase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
C Elongator complex
D EROM_010400 hypothetical protein K11374 ELP2; elongator complex protein 2
D EROM_081100 histone acetyltransferase K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
D EROM_040770 hypothetical protein K11375 ELP4; elongator complex protein 4
C Elongator related proteins
D EROM_091420 hypothetical protein K15455 DPH3; diphthamide biosynthesis protein 3
D EROM_030790 casein kinase 1-like protein K14758 HRR25; casein kinase I homolog HRR25 [EC:2.7.11.1]
C Other tRNA modification factors
D EROM_091600 translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D EROM_060230 queuine tRNA-ribosyltransferase K00777 QTRT1; queuine tRNA-ribosyltransferase catalytic subunit [EC:2.4.2.64]
B tRNA degradation factors
C TRAMP complex
D EROM_061510 DNA polymerase sigma K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
D EROM_110520 arginine methyltransferase-interacting protein K12597 AIR1_2; protein AIR1/2
D EROM_040850 Ski2 ATP-dependent RNA helicase K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D EROM_060370 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D EROM_031320 tRNA nucleotidyltransferase/poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
D EROM_010940 RtcB-like protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D EROM_060190 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D EROM_021270 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D EROM_051150 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D EROM_110390 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D EROM_071490 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D EROM_110980 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D EROM_040520 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D EROM_021400 alanyl-tRNA synthethase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D EROM_041120 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D EROM_110760 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D EROM_040690 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D EROM_080410 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D EROM_021120 glutamyl tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D EROM_101350 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D EROM_080480 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D EROM_071580 phenylalanyl-tRNA synthetase subunit beta K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D EROM_040840 phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D EROM_060560 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D EROM_091670 asparagine-tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
C Trans-editing factors
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferases
C Methyltransferases
D EROM_111410 putative S-adenosylmethionine-dependent K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D EROM_040830 pseudouridine synthase 2 K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D EROM_061200 pseudouridine synthase-like protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D EROM_111660 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
D EROM_060310 O-sialoglycoprotein endopeptidase/protein kinase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D EROM_090120 O-sialoglycoprotein endopeptidase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
C Other tRNA modification factors
D EROM_091600 translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
B tRNA degradation factors
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024