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Transfer RNA Biogenesis - Euzebya pacifica
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D DVS28_a2134 Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D DVS28_a3482 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DVS28_a3015 Prolyl-tRNA synthetase, bacterial type K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D DVS28_a0885 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DVS28_a2939 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DVS28_a2322 Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DVS28_a3976 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DVS28_a1526 Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D DVS28_a3784 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DVS28_a4097 Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D DVS28_a1709 Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D DVS28_a1755 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DVS28_a3080 Glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D DVS28_a1660 Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DVS28_a3008 Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DVS28_a0525 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DVS28_a3358 Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DVS28_a1502 Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DVS28_a1705 Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DVS28_a1824 Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DVS28_a1825 Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DVS28_a3227 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DVS28_a0851 Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D DVS28_a2234 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D DVS28_a5070 Ser-tRNA(Ala) deacylase K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
C AARS associated factors
D DVS28_a4712 Histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D DVS28_a2563 Protein-L-isoaspartate methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
C Psudouridine synthases
D DVS28_a4456 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D DVS28_a3380 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D DVS28_a3668 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DVS28_a2284 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D DVS28_a3774 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D DVS28_a3164 TsaC protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D DVS28_a3318 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D DVS28_a1368 Selenide,water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D DVS28_a3053 Histidinol-phosphatase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D DVS28_a4973 Histidinol-phosphatase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D DVS28_a5114 hypothetical protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D DVS28_a2134 Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D DVS28_a1384 Ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D DVS28_a3853 Ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
D DVS28_a3325 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
B tRNA transport factors
C tRNA export factors
D DVS28_a1271 ABC transporter, ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D DVS28_a2322 Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DVS28_a3015 Prolyl-tRNA synthetase, bacterial type K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D DVS28_a3227 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DVS28_a0851 Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D DVS28_a1660 Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DVS28_a3008 Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DVS28_a0885 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DVS28_a2939 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DVS28_a4097 Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D DVS28_a1755 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DVS28_a1502 Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DVS28_a3976 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DVS28_a0525 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DVS28_a1709 Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DVS28_a3358 Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DVS28_a3482 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DVS28_a1526 Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D DVS28_a3784 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DVS28_a1824 Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DVS28_a1825 Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DVS28_a1705 Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
C Trans-editing factors
D DVS28_a2234 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D DVS28_a2416 Cys-tRNA(Pro) deacylase YbaK K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D DVS28_a4179 YbaK/prolyl-tRNA synthetase associated region K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D DVS28_a5070 Ser-tRNA(Ala) deacylase K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D DVS28_a0598 tRNA-specific adenosine-34 deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
C Methylthiotransferases
D DVS28_a3319 tRNA-i(6)A37 methylthiotransferase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D DVS28_a3425 tRNA (Guanine37-N1) -methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D DVS28_a1822 RNA methyltransferase, TrmH family K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D DVS28_a4456 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D DVS28_a3380 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D DVS28_a3667 tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D DVS28_a2562 tRNA(U54)-2-thioribothymidine synthetase K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
D DVS28_a2283 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D DVS28_a0067 Rhodanese-like domain protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D DVS28_a3668 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DVS28_a2284 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DVS28_a4786 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D DVS28_a3318 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D DVS28_a2157 tRNA-(ms[2]io[6]A)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D DVS28_a0615 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D DVS28_a0345 Queuosine Biosynthesis QueC ATPase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D DVS28_a0346 Queuosine Biosynthesis QueE Radical SAM K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D DVS28_a1368 Selenide,water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D DVS28_a4114 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D DVS28_a0740 TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D DVS28_a3774 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D DVS28_a3164 TsaC protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D DVS28_a0742 TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D DVS28_a0739 TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
B tRNA degradation factors
C DVS28_a3896 3'-to-5' exoribonuclease RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C DVS28_a3361 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024