+F Repair protein KO #

  DNA Repair and Recombination Proteins - Geobacillus kaustophilus

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D GK0945 methylated-DNA-protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E GK3421 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GK0463 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E GK2169 nth; endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D GK3067 NTP pyrophosphohydrolases including oxidative damage repair enzymes K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GK2858 hypothetical conserved protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D GK0945 methylated-DNA-protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E GK3421 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GK0428 DNA-3-methyladenine glycosidase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E GK0463 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E GK2728 formamidopyrimidine-DNA glycosidase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E GK2169 nth; endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E GK2474 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E GK2580 single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E GK0594 single strand DNAspecific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E GK0276 DNA ligase (polydeoxyribonucleotide synthase[NAD+]) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E GK2730 polA; DNA-directed DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E GK3085 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E GK3086 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E GK2675 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E GK1383 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GK0275 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GK1385 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GK2730 polA; DNA-directed DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E GK0276 DNA ligase (polydeoxyribonucleotide synthase[NAD+]) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F GK0098 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F GK0099 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F GK0133 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F GK3390 DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F GK1168 DNA-directed RNA polymerase omega subunit (transcriptase omega chain) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F GK0048 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E GK1306 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E GK2693 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E GK1307 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E GK2395 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E GK2394 exodeoxyribonuclease VII small subunit (exonuclease VII small subunit) K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E GK2744 DNA-directed DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E GK1258 polC; DNA-directed DNA polymerase III alpha chain K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E GK0002 dnaN; DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E GK2513 hypothetical conserved protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E GK0025 DNA-directed DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E GK1454 hypothetical conserved protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E GK0017 dnaX; DNA-directed DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E GK0276 DNA ligase (polydeoxyribonucleotide synthase[NAD+]) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E GK1383 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GK0275 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GK1385 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GK3481 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E GK3191 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E GKP08 type IIs modification methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E GK2561 ATP-dependent exonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E GK1295 hypothetical protein K03553 recA; recombination protein RecA E GK2592 holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E GK2591 holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E GK1170 priA; primosomal replication factor Y (primosomal protein N') K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E GK0684 DNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E GK0683 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E GK1295 hypothetical protein K03553 recA; recombination protein RecA E GK0079 DNA repair protein K04485 radA; DNA repair protein RadA/Sms E GK0004 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF E GK1186 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E GK0575 hypothetical conserved protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E GK3462 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E GK2580 single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E GK0594 single strand DNAspecific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E GK2486 DNA repair protein (recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) E GK0019 DNA repair and genetic recombination protein K06187 recR; recombination protein RecR E GK2389 DNA repair protein (recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) E GK2167 recombination protein U (penicillin-binding protein related factor A) K03700 recU; recombination protein U E GK2592 holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E GK2591 holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E GK0682 ATP-dependent deoxyribonuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E GK0681 ATP-dependent deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E GK0684 DNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E GK0683 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F GK0006 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F GK0005 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F GK1211 topA; DNA topoisomerase I (omega-protein) (relaxing enzyme) (untwisting enzyme) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F GK2215 hbs; DNA-binding protein HU (DNA-binding protein II) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F GK2580 single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F GK0594 single strand DNAspecific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F GK2486 DNA repair protein (recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) F GK0019 DNA repair and genetic recombination protein K06187 recR; recombination protein RecR F GK0276 DNA ligase (polydeoxyribonucleotide synthase[NAD+]) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F GK2243 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F GK3085 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F GK3086 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D GK1295 hypothetical protein K03553 recA; recombination protein RecA D GK1328 transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88] D GK2389 DNA repair protein (recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) D GK3481 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D GK3191 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D GK0452 hypothetical conserved protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D GK2694 DNA-dependent DNA polymerase beta chain K02347 polX; DNA polymerase (family X) C DNA helicases D GK2176 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D GK1544 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D GK3067 NTP pyrophosphohydrolases including oxidative damage repair enzymes K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GK2858 hypothetical conserved protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GK0911 ribonucleoside-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D GK2419 ribonucleoside-diphosphate reductase (major subunit) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D GK0912 ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D GK2771 ribonucleotide reductase small subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D GKP26 ribonucleotide reductase small subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D GK2747 hypothetical conserved protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024