+E Ribosome biogenesis KO
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Ribosome Biogenesis - Hahella chejuensis
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D HCH_01800 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D HCH_05390 Oligoribonuclease (3'->5' exoribonuclease) K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C HCH_01801 era; GTP-binding protein Era K03595 era; GTPase
C HCH_05939 predicted GTPase K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C HCH_01707 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C HCH_06256 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C HCH_01238 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C HCH_05953 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C HCH_06229 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D HCH_06103 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D HCH_00028 sun; sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D HCH_02224 rsmC; 16S RNA G1207 methylase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D HCH_00571 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D HCH_01528 uncharacterized protein conserved in bacteria K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D HCH_01073 uncharacterized protein conserved in bacteria K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D HCH_07082 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D HCH_05891 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D HCH_05893 predicted methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D HCH_01818 SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D HCH_02608 predicted rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D HCH_01710 spoU; rRNA methylases K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D HCH_01231 ftsJ; 23S rRNA methylase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D HCH_05844 uncharacterized conserved protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D HCH_05988 predicted SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D HCH_00525 Protein involved in catabolism of external DNA K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D HCH_04964 predicted SAM-dependent methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D HCH_02278 predicted SAM-dependent methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D HCH_04459 predicted Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D HCH_02608 predicted rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D HCH_01806 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D HCH_04661 Pseudouridylate synthases, 23S RNA-specific K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D HCH_02061 rluA1; Pseudouridylate synthases, 23S RNA-specific K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D HCH_02226 rluA2; Pseudouridylate synthases, 23S RNA-specific K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D HCH_04736 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D HCH_02136 rluC; Pseudouridylate synthases, 23S RNA-specific K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D HCH_05920 Pseudouridylate synthases, 23S RNA-specific K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D HCH_02335 rsuA; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C HCH_05906 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C HCH_02991 Acetyltransferase, including N-acetylases of ribosomal protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C HCH_03717 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C HCH_05732 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C HCH_00778 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C HCH_01773 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C HCH_05339 2-methylthioadenine synthetase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C HCH_06007 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C HCH_02420 Methylase of polypeptide chain release factors K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C HCH_02330 uncharacterized conserved protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C HCH_01800 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C HCH_02135 rne; Ribonucleases G and E K08300 rne; ribonuclease E [EC:3.1.26.12]
C HCH_05330 Ribonucleases G and E K08301 rng; ribonuclease G [EC:3.1.26.-]
C HCH_00551 predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C HCH_04706 Superfamily II DNA and RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C HCH_05756 Superfamily II DNA and RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C HCH_01801 era; GTP-binding protein Era K03595 era; GTPase
C HCH_05392 predicted GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C HCH_04452 predicted GTPase K03977 engA; GTPase
C HCH_05939 predicted GTPase K03979 obgE; GTPase [EC:3.6.5.-]
C HCH_05382 GTPase K03665 hflX; GTPase
B Other maturation factors
C HCH_00033 putative translation factor (SUA5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C HCH_06313 Guanosine polyphosphate pyrophosphohydrolase/synthetases K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C HCH_01240 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C HCH_01237 uncharacterized protein conserved in bacteria K09748 rimP; ribosome maturation factor RimP
C HCH_05845 uncharacterized plant Iojap protein K09710 ybeB; ribosome-associated protein
C HCH_05350 predicted metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
C HCH_01230 predicted RNA-binding protein containing KH domain, possibly ribosomal protein K07574 yhbY; RNA-binding protein
C HCH_05327 uncharacterized protein conserved in bacteria K09889 yjgA; ribosome-associated protein
C HCH_10018 rmf; Ribosome modulation factor K03812 rmf; ribosome modulation factor
C HCH_06421 conserved hypothetical protein K03812 rmf; ribosome modulation factor
C HCH_05322 Ribosome-associated protein Y (PSrp-1) K05808 hpf; ribosome hibernation promoting factor
C HCH_01722 predicted GTPase, probable translation factor K06942 ychF; ribosome-binding ATPase
C HCH_02141 predicted metal-binding, possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024