+E
#
Transcription Machinery - Hahella chejuensis
%
!
AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E HCH_00882 Rad3-related DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
#
AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E HCH_06193 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E HCH_06224 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E HCH_06223 rpoC; DNA-directed RNA polymerase, beta' subunit/160 kD subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E HCH_06314 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E HCH_06274 rpoD; RNA polymerase sigma-70 factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E HCH_01877 rpoS; nonessential primary sigma factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E HCH_06622 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HCH_04155 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HCH_03224 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HCH_05136 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HCH_01790 algU; RNA polymerase sigma factor AlgU K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HCH_05594 predicted RNA polymerase sigma factor containing a TPR repeat domain K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HCH_00575 rpoH; RNA polymerase sigma-32 factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
E HCH_05320 rpoN; RNA polymerase sigma-54 factor RpoN K03092 rpoN; RNA polymerase sigma-54 factor
E HCH_05171 fliA; flagellar biosynthesis sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E HCH_05053 Superfamily II DNA/RNA helicase, SNF2 family K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
E HCH_01238 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
E HCH_05953 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
E HCH_06229 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
E HCH_05897 Glutathione S-transferase K03599 sspA; stringent starvation protein A
E HCH_10003 sspB; Stringent starvation protein B K03600 sspB; stringent starvation protein B
E HCH_02761 Serine phosphatase RsbU, regulator of sigma subunit K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E HCH_04621 Response regulator containing a CheY-like receiver domain and a GGDEF domain K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E HCH_01791 mucA; sigma factor algU negative regulatory protein MucA K03597 rseA; sigma-E factor negative regulatory protein RseA
E HCH_01792 mucB; sigma factor algU negative regulatory protein MucB K03598 rseB; sigma-E factor negative regulatory protein RseB
E HCH_01793 mucC; sigma factor algU negative regulatory protein MucC K03803 rseC; sigma-E factor negative regulatory protein RseC
D Transcription elongation factors
E HCH_01707 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
E HCH_06256 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
E HCH_01229 greA; Transcription elongation factor K03624 greA; transcription elongation factor GreA
E HCH_00585 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E HCH_00285 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024