+F Repair protein KO
#
DNA Repair and Recombination Proteins - Ipomoea nil (Japanese morning glory)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 109178894 DNA oxidative demethylase ALKBH2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 109162808 DExH-box ATP-dependent RNA helicase DExH14 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 109157101 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 109185928 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 109161798 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 109162681 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 109180753 uncharacterized LOC109180753 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 109177429 N-glycosylase/DNA lyase OGG1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 109191069 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 109167932 endonuclease III homolog 1, chloroplastic-like K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 109167702 DNA-(apurinic or apyrimidinic site) lyase 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 109159137 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 109150686 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 109187539 uncharacterized LOC109187539 K03504 POLD3; DNA polymerase delta subunit 3
F 109176346 uncharacterized LOC109176346 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 109158540 DNA polymerase epsilon catalytic subunit A-like K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 109163129 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 109169235 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 109156422 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 109164600 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 109193138 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 109189214 DNA-repair protein XRCC1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 109165294 tyrosyl-DNA phosphodiesterase 1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 109181766 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 109150619 polynucleotide 3'-phosphatase ZDP K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 109160939 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 109173877 poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 109173978 poly [ADP-ribose] polymerase 3 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 109170239 poly [ADP-ribose] polymerase 2 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 109177696 DNA repair protein RAD4 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 109163206 ubiquitin receptor RAD23b-like K10839 RAD23; UV excision repair protein RAD23
F 109161094 ubiquitin receptor RAD23c-like K10839 RAD23; UV excision repair protein RAD23
F 109156798 ubiquitin receptor RAD23c-like K10839 RAD23; UV excision repair protein RAD23
F 109168399 ubiquitin receptor RAD23d-like K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 109147674 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 109186622 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 109158438 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 109166525 cullin-4-like K10609 CUL4; cullin 4
F 109153814 cullin-4 K10609 CUL4; cullin 4
F 109174939 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 109185088 DNA damage-binding protein 1-like K10610 DDB1; DNA damage-binding protein 1
F 109163509 protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 109186126 uncharacterized LOC109186126 K15082 RAD7; DNA repair protein RAD7
F 109150583 uncharacterized LOC109150583 K15082 RAD7; DNA repair protein RAD7
F 109169861 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 K15083 RAD16; DNA repair protein RAD16
F 109159198 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 109177654 DNA-directed RNA polymerase II subunit 1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 109187240 DNA-directed RNA polymerase II subunit RPB2-like K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 109158819 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 109161155 DNA-directed RNA polymerases II, IV and V subunit 3-like K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 109172360 DNA-directed RNA polymerases IV and V subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 109193160 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 109178891 DNA-directed RNA polymerases IV and V subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 109175795 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 109151882 DNA-directed RNA polymerase V subunit 5C K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 109180900 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 109188016 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 109146555 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 109163948 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 109174970 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 109182040 DNA-directed RNA polymerases II and V subunit 8A-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 109155590 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 109153069 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 109170289 DNA-directed RNA polymerases II, IV and V subunit 9A-like K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 109170085 DNA-directed RNA polymerases II, IV and V subunit 9B K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 109181169 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
E Cul4-CSA complex
F 109147674 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 109186622 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 109158438 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 109166525 cullin-4-like K10609 CUL4; cullin 4
F 109153814 cullin-4 K10609 CUL4; cullin 4
F 109174939 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 109185088 DNA damage-binding protein 1-like K10610 DDB1; DNA damage-binding protein 1
F 109149420 DNA excision repair protein ERCC-8-like K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 109182726 protein CHROMATIN REMODELING 8 K10841 ERCC6; DNA excision repair protein ERCC-6
F 109185749 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 109163632 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 109164645 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 109188385 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 109148216 DNA repair helicase XPB1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 109165537 DNA repair helicase XPB1-like K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 109191324 DNA repair helicase XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 109190810 probable RNA polymerase II transcription factor B subunit 1-1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 109160268 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 109150875 RNA polymerase II transcription factor B subunit 4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 109170741 RNA polymerase II transcription factor B subunit 2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 109172239 cyclin-dependent kinase D-1-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 109172240 cyclin-dependent kinase D-1-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 109167013 cyclin-H1-1 K06634 CCNH; cyclin H
E 109154580 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 109149826 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109148124 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109193490 replication protein A 70 kDa DNA-binding subunit B-like K07466 RFA1; replication factor A1
E 109173173 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 109151627 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 109181474 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Other NER factors
E 109162796 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 109152943 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 109180574 DNA repair protein UVH3 K10846 ERCC5; DNA excision repair protein ERCC-5
E 109193138 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 109190812 MMS19 nucleotide excision repair protein homolog K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 109153708 cullin-3A-like K03869 CUL3; cullin 3
E 109166225 cullin-3A-like K03869 CUL3; cullin 3
E 109180532 cullin-3A-like K03869 CUL3; cullin 3
E 109151334 cullin-3A-like K03869 CUL3; cullin 3
E 109173866 transcription elongation factor B polypeptide 1 K03872 ELOC; elongin-C
E 109192408 uncharacterized LOC109192408 K03873 ELOB; elongin-B
E 109162066 uncharacterized LOC109162066 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 109184200 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 109146560 DNA mismatch repair protein MSH3 K08736 MSH3; DNA mismatch repair protein MSH3
E 109182884 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
E 109186417 DNA mismatch repair protein MSH7 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 109193263 DNA mismatch repair protein MLH1 K08734 MLH1; DNA mismatch repair protein MLH1
E 109160253 DNA mismatch repair protein PMS1 K10858 PMS2; DNA mismatch repair protein PMS2
E 109177761 DNA mismatch repair protein MLH3 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 109159137 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 109150686 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 109187539 uncharacterized LOC109187539 K03504 POLD3; DNA polymerase delta subunit 3
E 109176346 uncharacterized LOC109176346 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 109149826 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109148124 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109193490 replication protein A 70 kDa DNA-binding subunit B-like K07466 RFA1; replication factor A1
E 109173173 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 109151627 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 109181474 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 109191653 replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E 109151052 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 109160289 replication factor C subunit 2-like K10755 RFC2_4; replication factor C subunit 2/4
E 109146965 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 109177614 uncharacterized LOC109177614 K10756 RFC3_5; replication factor C subunit 3/5
E 109181521 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 109190229 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 109156076 replication factor C subunit 5-like K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 109156422 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 109163157 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 109165075 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 109193138 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 109191799 WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 109171141 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 109170498 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 109167558 nijmegen breakage syndrome 1 protein K10867 NBN; nibrin
D BRCA1-core complex
E 109165815 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
E 109161537 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 109179917 uncharacterized LOC109179917 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 109149578 BRCA1-A complex subunit BRE K12173 BRE; BRCA1-A complex subunit BRE
E 109179703 lys-63-specific deubiquitinase BRCC36-like K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 109181694 Fanconi anemia group J protein homolog K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 109163192 DNA topoisomerase 2-binding protein 1-A K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 109159859 BRCT domain-containing protein At4g02110 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 109171141 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 109170498 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 109167558 nijmegen breakage syndrome 1 protein K10867 NBN; nibrin
D BRCA complex
E 109180700 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 109190228 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 109190228 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 109163242 DNA repair protein RAD51 homolog 2 K10869 RAD51L1; RAD51-like protein 1
E 109183540 DNA repair protein RAD51 homolog 3 K10870 RAD51L2; RAD51-like protein 2
E 109172725 DNA repair protein RAD51 homolog 4 K10871 RAD51L3; RAD51-like protein 3
E 109176142 DNA repair protein XRCC2 homolog K10879 XRCC2; DNA-repair protein XRCC2
E 109173101 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 109152340 DNA repair RAD52-like protein 1, mitochondrial K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 109175694 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 109161891 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109165093 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109174591 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109174592 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109186580 SNF2 domain-containing protein CLASSY 1-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109166842 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109174809 SNF2 domain-containing protein CLASSY 3-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109152712 SNF2 domain-containing protein CLASSY 3-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 109148959 mediator of RNA polymerase II transcription subunit 34 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 109147007 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 109155385 ATP-dependent DNA helicase Q-like SIM K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 109167299 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 109147647 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 109171803 ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 109167299 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 109147647 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 109194123 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 109175217 DNA topoisomerase 3-beta K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 109185083 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 109193146 uncharacterized LOC109193146 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 109149826 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109148124 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109193490 replication protein A 70 kDa DNA-binding subunit B-like K07466 RFA1; replication factor A1
E 109173173 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 109151627 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 109181474 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 109188333 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 109158930 serine/threonine-protein phosphatase 4 regulatory subunit 2-B K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 109175674 serine/threonine-protein phosphatase 4 regulatory subunit 3 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 109185868 AP-5 complex subunit beta-1 K19022 AP5B1; AP-5 complex subunit beta-1
E 109153544 AP-5 complex subunit mu K19023 AP5M1; AP-5 complex subunit mu-1
E 109190531 AP-5 complex subunit zeta-1 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 109180861 structural maintenance of chromosomes protein 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E 109151324 structural maintenance of chromosomes protein 6B-like K22804 SMC6; structural maintenance of chromosomes protein 6
E 109151325 structural maintenance of chromosomes protein 6B-like K22804 SMC6; structural maintenance of chromosomes protein 6
E 109152192 non-structural maintenance of chromosomes element 1 homolog K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 109163630 E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 109181671 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 109160362 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 109172557 crossover junction endonuclease EME1B-like K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 109180575 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 109193072 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 109180822 structure-specific endonuclease subunit slx1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 109156420 uncharacterized LOC109156420 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 109157673 flap endonuclease GEN-like 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 109188816 flap endonuclease GEN-like 2 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 109160621 uncharacterized LOC109160621 K19026 SPG11; spatacsin
E 109174561 uncharacterized LOC109174561 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 109154794 protein MRG1 K11339 MORF4L1; mortality factor 4-like protein 1
E 109170157 protein MRG1-like K11339 MORF4L1; mortality factor 4-like protein 1
E 109166743 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 109180463 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 109149895 fidgetin-like protein 1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 109161502 zinc finger SWIM domain-containing protein 7 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 109170590 Werner Syndrome-like exonuclease K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 109170591 Werner Syndrome-like exonuclease K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 109187212 DNA-dependent metalloprotease WSS1-like K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 109190510 DNA-dependent metalloprotease WSS1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 109161057 single-stranded DNA-binding protein WHY1, chloroplastic-like K26559 WHY1; single-stranded DNA-binding protein WHY1
E 109148546 single-stranded DNA-bindig protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 109162004 ATP-dependent DNA helicase 2 subunit KU70 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 109183746 ATP-dependent DNA helicase 2 subunit KU80 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 109171141 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 109170498 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 109191691 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 109175840 DNA repair protein XRCC4 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 109160939 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 109181766 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 109165653 tyrosyl-DNA phosphodiesterase 2 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 109183435 uncharacterized LOC109183435 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
E 109183397 uncharacterized LOC109183397 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
E 109183399 uncharacterized LOC109183399 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E 109168553 E3 ubiquitin-protein ligase FANCL K10606 FANCL; E3 ubiquitin-protein ligase FANCL [EC:2.3.2.27]
E 109154574 ATP-dependent DNA helicase mph1-like K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 109163183 centromere protein S K11511 APITD1; centromere protein S
E 109180006 centromere protein X K15360 STRA13; centromere protein X
E 109186227 probable ubiquitin-conjugating enzyme E2 37 K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
E 109185300 uncharacterized LOC109185300 K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E 109167299 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 109147647 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 109194123 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 109175217 DNA topoisomerase 3-beta K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 109185083 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 109193146 uncharacterized LOC109193146 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E 109158224 Fanconi anemia group D2 protein homolog K10891 FANCD2; fanconi anemia group D2 protein
E 109155793 Fanconi anemia group I protein homolog K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
E 109180700 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 109181694 Fanconi anemia group J protein homolog K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 109162011 fanconi-associated nuclease 1 homolog K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 109190228 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 109183540 DNA repair protein RAD51 homolog 3 K10870 RAD51L2; RAD51-like protein 2
E 109170794 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
E 109191411 WD repeat-containing protein 48 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 109189630 phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 109167007 phytochrome-associated serine/threonine-protein phosphatase 3-like K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 109162303 serine/threonine-protein phosphatase 6 regulatory subunit 3-like K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 109173425 serine/threonine-protein phosphatase 6 regulatory subunit 3-like K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 109174118 serine/threonine-protein phosphatase 6 regulatory subunit 2 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 109158662 telomerase Cajal body protein 1 K23314 WRAP53; telomerase Cajal body protein 1
E 109173827 WD repeat-containing protein 70 K24752 WDR70; WD repeat-containing protein 70
E 109191799 WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 109177209 DNA polymerase eta K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 109161557 DNA polymerase kappa K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 109162052 DNA repair protein REV1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 109164108 DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 109180376 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 109191898 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 109178234 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 109193179 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 109176196 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 109159279 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 109171876 ubiquitin-conjugating enzyme E2 variant 1A-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 109182285 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 109193168 ubiquitin-conjugating enzyme E2 variant 1D-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 109159671 ubiquitin-conjugating enzyme E2 variant 1C-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 109191645 ubiquitin-conjugating enzyme E2 variant 1C-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 109150576 ubiquitin-conjugating enzyme E2 35-like K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 109188230 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 109187480 ubiquitin-conjugating enzyme E2 36-like K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 109156422 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 109181005 cell cycle checkpoint control protein RAD9A K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 109185369 uncharacterized LOC109185369 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 109167681 cell cycle checkpoint protein RAD17 K06662 HRAD17; cell cycle checkpoint protein
D 109151052 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 109160289 replication factor C subunit 2-like K10755 RFC2_4; replication factor C subunit 2/4
D 109146965 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 109177614 uncharacterized LOC109177614 K10756 RFC3_5; replication factor C subunit 3/5
D 109181521 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 109190229 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 109156076 replication factor C subunit 5-like K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 109185369 uncharacterized LOC109185369 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 109193818 uncharacterized LOC109193818 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 109166851 TIMELESS-interacting protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 109170794 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
D 109178092 uncharacterized LOC109178092 K20403 TTI1; TELO2-interacting protein 1
D 109177590 uncharacterized protein At2g39910 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 109172287 large proline-rich protein bag6-B-like K23390 BAG6; large proline-rich protein BAG6
D 109191426 Golgi to ER traffic protein 4 homolog K23387 GET4; golgi to ER traffic protein 4
D 109189764 Golgi to ER traffic protein 4 homolog K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 109147567 serine/threonine-protein kinase ATR K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 109191135 serine/threonine-protein kinase ATM K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 109177601 14-3-3-like protein 16R K06630 YWHAE; 14-3-3 protein epsilon
D 109180616 14-3-3 protein 1 K06630 YWHAE; 14-3-3 protein epsilon
D 109187788 14-3-3 protein 9-like K06630 YWHAE; 14-3-3 protein epsilon
D 109149664 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 109193682 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 109155578 14-3-3 protein 9-like K06630 YWHAE; 14-3-3 protein epsilon
D 109184777 14-3-3 protein 7 K06630 YWHAE; 14-3-3 protein epsilon
D 109170051 14-3-3-like protein C K06630 YWHAE; 14-3-3 protein epsilon
D 109169617 14-3-3 protein 9 K06630 YWHAE; 14-3-3 protein epsilon
D 109149337 14-3-3 protein 10-like K06630 YWHAE; 14-3-3 protein epsilon
D 109177787 In42; 14-3-3 protein 4 K06630 YWHAE; 14-3-3 protein epsilon
D 109184794 14-3-3-like protein C K06630 YWHAE; 14-3-3 protein epsilon
D 109170533 14-3-3 protein 10 K06630 YWHAE; 14-3-3 protein epsilon
D 109167731 14-3-3-like protein 16R K06630 YWHAE; 14-3-3 protein epsilon
D 109177828 14-3-3 protein 1-like K06630 YWHAE; 14-3-3 protein epsilon
D 109151327 14-3-3-like protein 16R K06630 YWHAE; 14-3-3 protein epsilon
D 109171366 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 109182796 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 109174948 uncharacterized LOC109174948 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 109150866 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109182251 serine/threonine-protein kinase Nek2-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109162120 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109160914 serine/threonine-protein kinase Nek2-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109191666 serine/threonine-protein kinase Nek5-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109173473 serine/threonine-protein kinase Nek1-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109154524 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109150468 protein downstream neighbor of Son K22422 DONSON; protein downstream neighbor of Son
D 109193162 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 109176898 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 109173972 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 109180816 protein SDE2 homolog K25059 SDE2; replication stress response regulator SDE2
D 109170141 protein DECREASED SIZE EXCLUSION LIMIT 1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 109184379 helicase and polymerase-containing protein TEBICHI K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 109168476 myb-binding protein 1A-like protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 109173023 DNA-directed primase/polymerase protein K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 109157546 uncharacterized LOC109157546 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 109163475 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 109184414 5' exonuclease Apollo K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 109192864 exonuclease V, chloroplastic K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 109191497 endonuclease V K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 109193601 DNA annealing helicase and endonuclease ZRANB3 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 109158940 endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 109156881 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 109171370 endonuclease 4-like K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 109187948 switch 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 109175678 pre-mRNA-processing factor 19 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 109176546 pre-mRNA-processing factor 19-like K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 109187086 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 109176173 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 109156196 protein pleiotropic regulatory locus 1-like K12862 PLRG1; pleiotropic regulator 1
D 109159437 protein pleiotropic regulatory locus 1-like K12862 PLRG1; pleiotropic regulator 1
D 109159440 protein pleiotropic regulatory locus 1-like K12862 PLRG1; pleiotropic regulator 1
D 109152199 protein pleiotropic regulatory locus 1-like K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 109171659 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 109171675 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 109171687 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 109172398 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 109172414 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 109172459 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 109152900 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 109170566 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 109181682 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 109159266 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 109174761 ribonucleoside-diphosphate reductase large subunit-like K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 109172549 ribonucleoside-diphosphate reductase large subunit-like K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 109178983 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 109191457 ribonucleoside-diphosphate reductase small chain A K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 109157101 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 109185928 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 109149278 DNA-3-methyladenine glycosylase 1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 109151345 uncharacterized LOC109151345 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 109161798 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 109162681 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 109192650 uncharacterized LOC109192650 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109163151 probable GMP synthase [glutamine-hydrolyzing] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109177393 DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109152981 probable GMP synthase [glutamine-hydrolyzing] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109156961 uncharacterized LOC109156961 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109164585 uncharacterized LOC109164585 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109175716 DNA-3-methyladenine glycosylase-like K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109177113 probable GMP synthase [glutamine-hydrolyzing] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109146729 DNA-3-methyladenine glycosylase-like K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109165574 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 109191069 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 109167932 endonuclease III homolog 1, chloroplastic-like K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 109181675 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic-like K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E 109177186 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic-like K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 109187759 DNA polymerase I B, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 109187759 DNA polymerase I B, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 29082155 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 29082165 rpoC2; RNA polymerase beta K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 29082156 rpoC1; RNA polymerase beta K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 29082119 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 109165105 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 109184074 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 109186145 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 109168938 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 109178224 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 109186145 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 109168938 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 109178224 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 109190643 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E 109163349 ATP-dependent DNA helicase homolog RECG, chloroplastic K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 109181802 DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 109182353 DNA gyrase subunit B, chloroplastic/mitochondrial-like K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 109162707 ATP-dependent DNA helicase RecQ-like K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 109186145 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
D 109168938 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
D 109178224 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D 109184074 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 109171659 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 109171675 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 109171687 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 109172398 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 109172414 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 109172459 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 109152900 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 109170566 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 109181682 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 109159266 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024