+F Repair protein KO #

  DNA Repair and Recombination Proteins - Lactobacillus acidophilus NCFM

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D LBA0255 S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E LBA0703 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LBA0113 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LBA1160 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D LBA0441 mutT; putative mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LBA1193 mutT; putative mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LBA0345 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LBA0255 S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E LBA0703 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LBA1282 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E LBA0113 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LBA0155 DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E LBA1549 mutM; formamidopyrimidine-DNA glycosylase Fpg K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E LBA1160 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LBA0056 exoA; exodeoxyribonuclease A K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E LBA1699 exoA; exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E LBA1243 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LBA0529 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LBA1550 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LBA0689 uvrA; excinuclease subunit A K03701 uvrA; excinuclease ABC subunit A E LBA1002 excinuclease subunit A K03701 uvrA; excinuclease ABC subunit A E LBA0688 uvrB; excinuclease ABC (subunit B) K03702 uvrB; excinuclease ABC subunit B E LBA0946 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E LBA0528 pcrA; ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LBA1676 probable ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LBA1550 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E LBA0529 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LBA0284 RNA-polymerase DNA-directed beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LBA0285 RNA-polymerase DNA-directed beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LBA0317 RNA-polymerase DNA-directed K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F LBA0232 RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F LBA1324 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LBA0273 trcF; transcriptional repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LBA0408 hexA; DNA mismatch repair K03555 mutS; DNA mismatch repair protein MutS E LBA0421 mutS; mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E LBA0409 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LBA1331 xseA; exodeoxyribonuclease VII (large subunit) EX7L K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LBA1330 xseB; exodeoxyribonuclease VII (small subunit) EX7S K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LBA0955 DNA polymerase III alpha-chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LBA1261 DNA polymerase III alpha chain K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E LBA0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LBA0840 putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LBA0383 DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E LBA0706 DNA polymerase III alpha chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E LBA1648 DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E LBA0376 DNA polymerase III (DNA directed) gamma-tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LBA0529 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LBA0528 pcrA; ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LBA1676 probable ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LBA0008 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E LBA0477 putative DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LBA0825 exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LBA0666 recA; recombination protein K03553 recA; recombination protein RecA E LBA0410 ruvA; helicase Holliday junction K03550 ruvA; holliday junction DNA helicase RuvA E LBA0411 ruvB; helicase Holliday junction K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LBA1323 priA; primosomal replication factor K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E LBA0666 recA; recombination protein K03553 recA; recombination protein RecA E LBA0346 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E LBA0004 recF; DNA repair and genetic recombination protein K03629 recF; DNA replication and repair protein RecF E LBA1309 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LBA1243 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LBA1200 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E LBA0379 recM; recombinational DNA repair protein K06187 recR; recombination protein RecR E LBA1327 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E LBA1158 penicillin binding protein related factor A K03700 recU; recombination protein U E LBA0410 ruvA; helicase Holliday junction K03550 ruvA; holliday junction DNA helicase RuvA E LBA0411 ruvB; helicase Holliday junction K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E LBA1165 addA; ATP-dependent exonuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E LBA1166 addB; ATP-dependent exonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LBA0006 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LBA0005 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LBA0981 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F LBA0970 DNA-binding protein II HB K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LBA1243 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LBA1200 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F LBA0379 recM; recombinational DNA repair protein K06187 recR; recombination protein RecR F LBA0529 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F LBA1000 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LBA0689 uvrA; excinuclease subunit A K03701 uvrA; excinuclease ABC subunit A F LBA1002 excinuclease subunit A K03701 uvrA; excinuclease ABC subunit A F LBA0688 uvrB; excinuclease ABC (subunit B) K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LBA0414 DNA-damage-inducible protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D LBA0666 recA; recombination protein K03553 recA; recombination protein RecA D LBA1280 lexA; transcriptional repressor protein K01356 lexA; repressor LexA [EC:3.4.21.88] D LBA1327 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D LBA0008 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LBA0633 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D LBA1164 dinG; ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D LBA0470 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D LBA0441 mutT; putative mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LBA1193 mutT; putative mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LBA0345 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LBA1750 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D LBA0415 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024