+D GENES KO
#
KEGG Orthology (KO) - Limosilactobacillus fermentum CECT 5716
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:lfr00010]
D LC40_0825 Glucose kinase K25026 glk; glucokinase [EC:2.7.1.2]
D LC40_1069 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D LC40_0290 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D LC40_0292 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D LC40_0257 Glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D LC40_0258 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D LC40_0259 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D LC40_0571 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D LC40_0743 Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D LC40_0742 Pyruvate dehydrogenase complex E1 component beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D LC40_0741 Pyruvate dehydrogenase complex E2 component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D LC40_0740 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D LC40_0532 L-lactate dehydrogenase (L-LDH) K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0173 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0246 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0410 Possible L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0923 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0201 Alcohol acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D LC40_0964 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D LC40_0999 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D LC40_1053 Possible aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D LC40_0247 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
C 00020 Citrate cycle (TCA cycle) [PATH:lfr00020]
D LC40_0614 Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D LC40_0740 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D LC40_0743 Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D LC40_0742 Pyruvate dehydrogenase complex E1 component beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D LC40_0741 Pyruvate dehydrogenase complex E2 component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:lfr00030]
D LC40_1069 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D LC40_0290 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D LC40_1121 Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D LC40_1008 Putative uncharacterized protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D LC40_0397 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D LC40_1122 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D LC40_1091 Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D LC40_1092 Putative transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D LC40_0191 Ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D LC40_1112 Phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D LC40_1072 Ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D LC40_1105 Ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D LC40_1108 Ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D LC40_0247 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D LC40_0144 Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
C 00040 Pentose and glucuronate interconversions [PATH:lfr00040]
D LC40_1123 Short-chain alcohol dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D LC40_0237 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D LC40_0980 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D LC40_0285 Xylose kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D LC40_0284 Xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
C 00051 Fructose and mannose metabolism [PATH:lfr00051]
D LC40_1068 Putative fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D LC40_0272 Mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D LC40_0284 Xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D LC40_0292 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D LC40_0274 PTS system mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D LC40_0275 PTS system mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D LC40_0276 PTS system mannose-specific IID component K02796 manZ; mannose PTS system EIID component
C 00052 Galactose metabolism [PATH:lfr00052]
D LC40_1053 Possible aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D LC40_1142 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D LC40_1141 Galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D LC40_0212 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D LC40_0237 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D LC40_0247 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D LC40_0825 Glucose kinase K25026 glk; glucokinase [EC:2.7.1.2]
D LC40_0186 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D LC40_0187 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D LC40_1129 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D LC40_1109 PTS system galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
D LC40_1000 Sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D LC40_0498 Alpha-glucosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism [PATH:lfr00500]
D LC40_0998 Protein-N(Pi)-phosphohistidine--sugar phosphotransferase K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D LC40_1000 Sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D LC40_0237 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D LC40_0732 PTS system cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D LC40_0498 Alpha-glucosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D LC40_0247 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D LC40_0825 Glucose kinase K25026 glk; glucokinase [EC:2.7.1.2]
D LC40_1069 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D LC40_0290 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D LC40_1068 Putative fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:lfr00520]
D LC40_1068 Putative fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D LC40_0268 Glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D LC40_0267 Phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D LC40_0143 Bifunctional protein glmU (Includes: UDP-N-acetylglucosamine pyrophosphorylase (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase) K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D LC40_0148 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D LC40_0313 Putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D LC40_0264 UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D LC40_0286 Putative xylosidase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D LC40_0825 Glucose kinase K25026 glk; glucokinase [EC:2.7.1.2]
D LC40_0247 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D LC40_0237 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D LC40_1142 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D LC40_1141 Galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D LC40_0212 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D LC40_0274 PTS system mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D LC40_0275 PTS system mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D LC40_0276 PTS system mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D LC40_1069 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D LC40_0290 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D LC40_0272 Mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
C 00620 Pyruvate metabolism [PATH:lfr00620]
D LC40_0743 Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D LC40_0742 Pyruvate dehydrogenase complex E1 component beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D LC40_0741 Pyruvate dehydrogenase complex E2 component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D LC40_0740 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D LC40_0201 Alcohol acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D LC40_0964 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D LC40_0999 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D LC40_0370 Acetate kinase (Acetokinase) K00925 ackA; acetate kinase [EC:2.7.2.1]
D LC40_0263 Phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D LC40_0571 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D LC40_0226 Acetyl-CoA carboxylase carboxyl transferase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D LC40_1018 Acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D LC40_0225 Acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D LC40_0532 L-lactate dehydrogenase (L-LDH) K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0173 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0246 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0410 Possible L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0923 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0434 D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D LC40_0715 D-2-hydroxyisocaproate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D LC40_0021 D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D LC40_1126 D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D LC40_1101 Putative uncharacterized protein K22373 larA; lactate racemase [EC:5.1.2.1]
D LC40_0643 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:lfr00630]
D LC40_0643 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D LC40_0823 Glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D LC40_0305 Serine hydroxymethyltransferase (Serine methylase) (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D LC40_0740 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00640 Propanoate metabolism [PATH:lfr00640]
D LC40_0370 Acetate kinase (Acetokinase) K00925 ackA; acetate kinase [EC:2.7.2.1]
D LC40_0263 Phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D LC40_0740 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D LC40_0226 Acetyl-CoA carboxylase carboxyl transferase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D LC40_1018 Acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D LC40_0225 Acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D LC40_0532 L-lactate dehydrogenase (L-LDH) K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0173 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0246 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0410 Possible L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0923 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0436 Glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D LC40_0501 1,3-propanediol dehydrogenase K00086 dhaT; 1,3-propanediol dehydrogenase [EC:1.1.1.202]
C 00650 Butanoate metabolism [PATH:lfr00650]
D LC40_0643 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D LC40_0650 Putative 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D LC40_0201 Alcohol acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D LC40_0035 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D LC40_0473 Hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D LC40_0864 Alcohol dehydrogenase K23259 adh; isopropanol dehydrogenase (NADP+) [EC:1.1.1.80]
D LC40_0631 Alcohol dehydrogenase K23259 adh; isopropanol dehydrogenase (NADP+) [EC:1.1.1.80]
D LC40_0670 Acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D LC40_0293 Possible acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D LC40_0618 Possible (R,R)-butanediol dehydrogenase K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
D LC40_0950 Acetoin dehydrogenase K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
C 00660 C5-Branched dibasic acid metabolism [PATH:lfr00660]
D LC40_0670 Acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D LC40_0293 Possible acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D LC40_0625 3-isopropylmalate dehydratase large subunit (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D LC40_0626 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism
D LC40_0292 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:lfr00190]
D LC40_0702 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D LC40_0197 Cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D LC40_0198 Cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D LC40_0310 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D LC40_0312 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D LC40_0311 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D LC40_0595 Inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
D LC40_0210 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:lfr00680]
D LC40_0305 Serine hydroxymethyltransferase (Serine methylase) (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D LC40_0259 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D LC40_0370 Acetate kinase (Acetokinase) K00925 ackA; acetate kinase [EC:2.7.2.1]
D LC40_0263 Phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D LC40_0585 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D LC40_1147 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D LC40_0516 Phosphoserine aminotransferase (Phosphohydroxythreonine aminotransferase) (PSAT) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00910 Nitrogen metabolism [PATH:lfr00910]
D LC40_0697 MFS family major facilitator transporter, nitrate:nitrite antiporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D LC40_0690 Nitrate reductase alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D LC40_0689 Nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D LC40_1039 Nitric oxide reductase K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D LC40_0823 Glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D LC40_0527 Glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D LC40_0528 Glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D LC40_0215 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00920 Sulfur metabolism [PATH:lfr00920]
D LC40_0351 Phosphoesterase domain-containing protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D LC40_0243 Homoserine O-succinyltransferase K23304 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D LC40_0244 Cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D LC40_0633 Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D LC40_0542 Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D LC40_0536 Cystathionine gamma-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:lfr00061]
D LC40_0226 Acetyl-CoA carboxylase carboxyl transferase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D LC40_1018 Acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D LC40_0225 Acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D LC40_0222 Possible [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D LC40_0224 3-oxoacyl-[acyl-carrier protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D LC40_0223 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D LC40_0221 (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D LC40_0227 Enoyl-[acyl-carrier protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D LC40_1036 Putative uncharacterized protein K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:lfr00071]
D LC40_0643 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D LC40_0201 Alcohol acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D LC40_0964 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D LC40_0999 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:lfr00561]
D LC40_0436 Glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D LC40_0728 Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D LC40_0943 Putative uncharacterized protein K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D LC40_0885 Glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D LC40_1079 Phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D LC40_1044 Phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D LC40_1129 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D LC40_0501 1,3-propanediol dehydrogenase K00086 dhaT; 1,3-propanediol dehydrogenase [EC:1.1.1.202]
C 00564 Glycerophospholipid metabolism [PATH:lfr00564]
D LC40_0236 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D LC40_0943 Putative uncharacterized protein K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D LC40_0031 Glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D LC40_0481 Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D LC40_0299 Cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D LC40_0024 Cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:lfr00600]
D LC40_0186 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D LC40_0187 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D LC40_1129 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:lfr00230]
D LC40_0247 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D LC40_0144 Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D LC40_0094 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D LC40_0097 Phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D LC40_0091 Phosphoribosylformylglycinamidine synthase K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D LC40_0095 Phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D LC40_0949 Phosphoribosylaminoimidazole carboxylase ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D LC40_0088 Phosphoribosylaminoimidazole carboxylase ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D LC40_0089 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D LC40_0096 Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D LC40_0064 Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D LC40_0659 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D LC40_1040 GMP synthase (Glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D LC40_0033 Guanosine 5'-monophosphate oxidoreductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D LC40_0666 Guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D LC40_1062 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D LC40_0204 Ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D LC40_1060 Ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D LC40_0203 Ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D LC40_1061 Ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D LC40_0867 Anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D LC40_0534 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D LC40_0209 Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D LC40_0211 Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D LC40_0034 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D LC40_0121 Allantoinase K01466 allB; allantoinase [EC:3.5.2.5]
D LC40_0122 Allantoate amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D LC40_0120 Possible serine--pyruvate transaminase K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D LC40_0123 Ureidoglycolate dehydrogenase K00073 allD; ureidoglycolate dehydrogenase (NAD+) [EC:1.1.1.350]
D LC40_0215 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:lfr00240]
D LC40_0492 Carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D LC40_0757 Carbamoyl-phosphate synthase (Glutamine-hydrolyzing) K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D LC40_0491 Carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D LC40_0783 Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D LC40_0780 Dihydroorotate dehydrogenase K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
D LC40_0478 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D LC40_0659 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D LC40_0147 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D LC40_0306 Uracil phosphoribosyltransferase (UMP pyrophosphorylase) (UPRTase) K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D LC40_0124 Nucleoside hydrolase K01250 rihA; pyrimidine-specific ribonucleoside hydrolase [EC:3.2.2.-]
D LC40_0597 Cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D LC40_0867 Anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D LC40_1062 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D LC40_0204 Ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D LC40_1060 Ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D LC40_0203 Ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D LC40_1061 Ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D LC40_0583 Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:lfr00250]
D LC40_1015 Aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D LC40_0438 Asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D LC40_1164 Asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D LC40_0238 Putative uncharacterized protein K13566 NIT2; omega-amidase [EC:3.5.1.3]
D LC40_1029 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D LC40_1028 Argininosuccinate lyase (ASAL) (Arginosuccinase) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D LC40_0034 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D LC40_0089 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D LC40_0783 Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D LC40_0035 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D LC40_0527 Glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D LC40_0528 Glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D LC40_0823 Glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D LC40_0492 Carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D LC40_0757 Carbamoyl-phosphate synthase (Glutamine-hydrolyzing) K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D LC40_0491 Carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D LC40_0268 Glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D LC40_0094 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:lfr00260]
D LC40_0559 Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D LC40_0564 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D LC40_0541 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D LC40_0745 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D LC40_0746 Homoserine kinase (HSK) (HK) K00872 thrB; homoserine kinase [EC:2.7.1.39]
D LC40_0744 Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D LC40_0305 Serine hydroxymethyltransferase (Serine methylase) (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D LC40_0585 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D LC40_1147 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D LC40_0516 Phosphoserine aminotransferase (Phosphohydroxythreonine aminotransferase) (PSAT) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D LC40_0740 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D LC40_0503 Probable D-serine dehydratase (D-serine deaminase) (DSD) K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
C 00270 Cysteine and methionine metabolism [PATH:lfr00270]
D LC40_0243 Homoserine O-succinyltransferase K23304 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D LC40_0244 Cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D LC40_0633 Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D LC40_0632 Cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D LC40_0535 Cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D LC40_0617 Aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D LC40_0544 Homocysteine S-methyltransferase K00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]
D LC40_0861 S-adenosylmethionine synthetase (Methionine adenosyltransferase) (AdoMet synthetase) (MAT) K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D LC40_0239 LL-diaminopimelate aminotransferase K08969 mtnE; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117]
D LC40_1013 S-ribosylhomocysteine lyase (Autoinducer-2 production protein luxS) (AI-2 synthesis protein) K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D LC40_0559 Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D LC40_0564 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D LC40_0541 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D LC40_0745 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D LC40_0542 Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D LC40_0536 Cystathionine gamma-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D LC40_0245 Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D LC40_0686 Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D LC40_0421 Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D LC40_0924 Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D LC40_0664 Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D LC40_0532 L-lactate dehydrogenase (L-LDH) K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0173 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0246 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0410 Possible L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0923 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0585 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D LC40_1147 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D LC40_0516 Phosphoserine aminotransferase (Phosphohydroxythreonine aminotransferase) (PSAT) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:lfr00280]
D LC40_0245 Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D LC40_0740 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D LC40_1071 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D LC40_0643 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D LC40_0473 Hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:lfr00290]
D LC40_0625 3-isopropylmalate dehydratase large subunit (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D LC40_0626 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D LC40_0670 Acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D LC40_0245 Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00300 Lysine biosynthesis [PATH:lfr00300]
D LC40_0541 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D LC40_0745 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D LC40_0559 Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D LC40_0564 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D LC40_0488 Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D LC40_0523 Peptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D LC40_0667 Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D LC40_0041 Peptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D LC40_0560 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D LC40_0563 Amino acid aminotransferase K00841 patA; aminotransferase [EC:2.6.1.-]
D LC40_0099 Possible aspartate transaminase K00841 patA; aminotransferase [EC:2.6.1.-]
D LC40_0022 Aromatic amino acid aminotransferase K00841 patA; aminotransferase [EC:2.6.1.-]
D LC40_0665 Aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D LC40_0150 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:lfr00310]
D LC40_0740 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D LC40_0643 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D LC40_0035 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00220 Arginine biosynthesis [PATH:lfr00220]
D LC40_0214 Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D LC40_1029 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D LC40_1028 Argininosuccinate lyase (ASAL) (Arginosuccinase) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D LC40_0216 Arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D LC40_0823 Glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D LC40_0215 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D LC40_0489 ArgJ family protein K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D LC40_0490 N-acetyl-gamma-glutamyl-phosphate reductase (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D LC40_0488 Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:lfr00330]
D LC40_0597 Cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D LC40_0762 Possible 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D LC40_0891 Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D LC40_1058 Possible prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
C 00340 Histidine metabolism [PATH:lfr00340]
D LC40_0511 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D LC40_0513 Imidazole glycerol phosphate synthase subunit hisF (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D LC40_0514 Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D LC40_0510 Histidinol-phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D LC40_0512 Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D LC40_0640 Putative uncharacterized protein K17363 urdA; urocanate reductase [EC:1.3.99.33]
C 00350 Tyrosine metabolism [PATH:lfr00350]
D LC40_0514 Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D LC40_0201 Alcohol acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D LC40_0964 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D LC40_0999 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D LC40_0174 2-oxo-hept-3-ene-1,7-dioate hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
D LC40_0035 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D LC40_0525 Benzyl alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
C 00360 Phenylalanine metabolism [PATH:lfr00360]
D LC40_0650 Putative 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D LC40_0514 Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D LC40_0525 Benzyl alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D LC40_0762 Possible 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D LC40_0435 2-oxo-hept-3-ene-1,7-dioate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00380 Tryptophan metabolism [PATH:lfr00380]
D LC40_0740 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D LC40_0643 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D LC40_0762 Possible 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:lfr00400]
D LC40_0718 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D LC40_0717 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D LC40_0514 Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
C 00430 Taurine and hypotaurine metabolism [PATH:lfr00430]
D LC40_0263 Phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D LC40_0370 Acetate kinase (Acetokinase) K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:lfr00450]
D LC40_0536 Cystathionine gamma-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D LC40_0632 Cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D LC40_0535 Cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D LC40_0617 Aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D LC40_0708 Cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D LC40_0242 Thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D LC40_0289 Thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D LC40_0136 Methionyl-tRNA synthase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:lfr00460]
D LC40_1015 Aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D LC40_0305 Serine hydroxymethyltransferase (Serine methylase) (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:lfr00470]
D LC40_0152 Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D LC40_0318 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D LC40_0046 D-alanine--poly(Phosphoribitol) ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D LC40_0402 UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D LC40_0503 Probable D-serine dehydratase (D-serine deaminase) (DSD) K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D LC40_0560 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:lfr00480]
D LC40_1019 Lactam utilization protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D LC40_0686 Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D LC40_0421 Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D LC40_0924 Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D LC40_0664 Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D LC40_0125 Membrane alanyl aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D LC40_1022 Glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D LC40_0614 Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D LC40_1122 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D LC40_1121 Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:lfr00511]
D LC40_0186 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D LC40_0187 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
C 00540 Lipopolysaccharide biosynthesis
D LC40_0910 UDP-D-galactose:(Glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase K02840 waaB; UDP-D-galactose:(glucosyl)LPS alpha-1,6-D-galactosyltransferase [EC:2.4.1.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:lfr00541]
D LC40_0237 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D LC40_0212 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D LC40_0076 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D LC40_0895 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D LC40_0077 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D LC40_0078 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D LC40_0272 Mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D LC40_0143 Bifunctional protein glmU (Includes: UDP-N-acetylglucosamine pyrophosphorylase (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase) K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:lfr00550]
D LC40_0148 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D LC40_0313 Putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D LC40_0264 UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D LC40_0842 UDP-N-acetylmuramate--L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase) K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D LC40_0402 UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D LC40_0318 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D LC40_0150 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D LC40_0480 Undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D LC40_0966 Undecaprenyl-diphosphatase (Undecaprenyl pyrophosphate phosphatase) (Bacitracin resistance protein) K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D LC40_0401 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D LC40_0765 Penicillin binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D LC40_0849 Penicillin binding protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D LC40_0400 Penicillin-binding protein 1 K08724 pbpB; penicillin-binding protein 2B
D LC40_0826 Penicillin binding protein K21465 pbpA; penicillin-binding protein A
D LC40_1006 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D LC40_0083 Serine family D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D LC40_0301 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D LC40_0300 Adenosylcobyric acid synthase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:lfr00552]
D LC40_0966 Undecaprenyl-diphosphatase (Undecaprenyl pyrophosphate phosphatase) (Bacitracin resistance protein) K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D LC40_0071 Putative uncharacterized protein K09809 tagF; CDP-glycerol glycerophosphotransferase [EC:2.7.8.12]
D LC40_0037 Poly(Glycerol-phosphate) alpha-glucosyltransferase K00712 tagE; poly(glycerol-phosphate) alpha-glucosyltransferase [EC:2.4.1.52]
D LC40_0038 Poly(Glycerol-phosphate) alpha-glucosyltransferase K00712 tagE; poly(glycerol-phosphate) alpha-glucosyltransferase [EC:2.4.1.52]
D LC40_0046 D-alanine--poly(Phosphoribitol) ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D LC40_0045 D-alanyl transfer protein K03739 dltB; membrane protein involved in D-alanine export
D LC40_0044 D-alanine transfer protein DltD K03740 dltD; D-alanine transfer protein
D LC40_0066 Eps transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D LC40_0928 Transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D LC40_1079 Phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D LC40_1044 Phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D LC40_0885 Glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D LC40_0884 Glycosyltransferase K13678 cpoA; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-galactosyltransferase [EC:2.4.1.-]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:lfr00730]
D LC40_0529 Phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D LC40_0337 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D LC40_0521 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D LC40_0338 Probable thiamine biosynthesis protein thiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D LC40_0657 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D LC40_1033 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D LC40_0530 Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D LC40_0807 Ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C 00740 Riboflavin metabolism [PATH:lfr00740]
D LC40_0519 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D LC40_0779 HAD superfamily hydrolase K21064 ycsE; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104]
D LC40_0530 Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
C 00750 Vitamin B6 metabolism [PATH:lfr00750]
D LC40_0613 Pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D LC40_0516 Phosphoserine aminotransferase (Phosphohydroxythreonine aminotransferase) (PSAT) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D LC40_0744 Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:lfr00760]
D LC40_0890 Nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D LC40_0183 Nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D LC40_0395 ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D LC40_0035 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:lfr00770]
D LC40_0670 Acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D LC40_0502 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D LC40_0240 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D LC40_1043 Pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D LC40_0813 Flavoprotein K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D LC40_0245 Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:lfr00780]
D LC40_0224 3-oxoacyl-[acyl-carrier protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D LC40_0223 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D LC40_0221 (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D LC40_0227 Enoyl-[acyl-carrier protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D LC40_0228 Biotin-[acetyl-CoA-carboxylase] ligase and biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:lfr00785]
D LC40_0546 Lipoate-protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D LC40_0739 Possible lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D LC40_1086 Lipoate-protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D LC40_0740 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D LC40_0743 Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D LC40_0742 Pyruvate dehydrogenase complex E1 component beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D LC40_0741 Pyruvate dehydrogenase complex E2 component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00790 Folate biosynthesis [PATH:lfr00790]
D LC40_0852 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D LC40_0853 Tetrahydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D LC40_0343 Possible tetrahydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D LC40_0519 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D LC40_0698 Molybdenum (Mo2+) cofactor biosynthesis enzyme K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D LC40_0699 Molybdopterin converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D LC40_0691 Molybdopterin biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
C 00670 One carbon pool by folate [PATH:lfr00670]
D LC40_0087 Formate--tetrahydrofolate ligase (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D LC40_0818 Bifunctional protein folD (Includes: Methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D LC40_0305 Serine hydroxymethyltransferase (Serine methylase) (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D LC40_0096 Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D LC40_0810 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D LC40_0583 Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:lfr00860]
D LC40_0537 Putative uncharacterized protein K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:lfr00130]
D LC40_1048 O-succinylbenzoic acid (OSB) synthetase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D LC40_0629 O-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D LC40_0628 Naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D LC40_0713 Prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D LC40_1077 Putative uncharacterized protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D LC40_0723 3-beta hydroxysteroid dehydrogenase/isomerase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:lfr00900]
D LC40_0657 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D LC40_1033 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D LC40_0139 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D LC40_0643 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D LC40_0473 Hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D LC40_0132 Hydroxymethylglutaryl-CoA reductase K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88]
D LC40_0773 Phosphomevalonate kinase K00938 E2.7.4.2; phosphomevalonate kinase [EC:2.7.4.2]
D LC40_0772 Mevalonate diphosphate decarboxylase K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33]
D LC40_0816 Geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D LC40_0480 Undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D LC40_1091 Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:lfr00523]
D LC40_0076 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D LC40_0895 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D LC40_0077 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D LC40_0078 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D LC40_0895 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D LC40_0077 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis [PATH:lfr00311]
D LC40_0616 Choloylglycine hydrolase K24041 yxeI; penicillin V amidase [EC:3.5.1.11]
D LC40_1005 Putative uncharacterized protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:lfr00261]
D LC40_0559 Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D LC40_0564 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:lfr00521]
D LC40_0825 Glucose kinase K25026 glk; glucokinase [EC:2.7.1.2]
D LC40_0247 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D LC40_0076 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D LC40_0895 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D LC40_0077 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D LC40_0078 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D LC40_0825 Glucose kinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:lfr00525]
D LC40_0076 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D LC40_0895 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D LC40_0077 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:lfr00401]
D LC40_0717 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D LC40_0514 Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
D LC40_0222 Possible [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D LC40_0223 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D LC40_0227 Enoyl-[acyl-carrier protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
C 00999 Biosynthesis of various plant secondary metabolites
D LC40_0861 S-adenosylmethionine synthetase (Methionine adenosyltransferase) (AdoMet synthetase) (MAT) K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:lfr00362]
D LC40_0435 2-oxo-hept-3-ene-1,7-dioate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D LC40_0650 Putative 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D LC40_0643 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D LC40_0762 Possible 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:lfr00625]
D LC40_0964 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D LC40_0999 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D LC40_0201 Alcohol acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
D LC40_0525 Benzyl alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
C 00622 Xylene degradation [PATH:lfr00622]
D LC40_0525 Benzyl alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D LC40_0435 2-oxo-hept-3-ene-1,7-dioate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:lfr00643]
D LC40_0762 Possible 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D LC40_0435 2-oxo-hept-3-ene-1,7-dioate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00626 Naphthalene degradation [PATH:lfr00626]
D LC40_0964 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D LC40_0999 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D LC40_0201 Alcohol acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:lfr03020]
D LC40_0962 DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D LC40_0961 DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (Transcriptase subunit beta') (RNA polymerase subunit beta') K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D LC40_0955 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:lfr03010]
D LC40_0577 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D LC40_0476 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D LC40_0958 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D LC40_0957 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D LC40_0102 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0160 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0882 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0115 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0372 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0103 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D LC40_0116 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D LC40_0163 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D LC40_0373 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D LC40_0879 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D LC40_0104 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0877 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0117 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0374 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0164 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0878 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0118 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0375 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0105 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0165 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:lfr00970]
D LC40_0162 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D LC40_0880 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D LC40_0820 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D LC40_0255 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D LC40_0381 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D LC40_0968 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D LC40_0921 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D LC40_0166 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D LC40_0386 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D LC40_0985 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D LC40_0392 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D LC40_0870 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D LC40_0295 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D LC40_0181 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D LC40_0721 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D LC40_0294 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D LC40_0051 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D LC40_0876 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D LC40_0390 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D LC40_0388 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D LC40_0379 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D LC40_0969 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D LC40_0851 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D LC40_0871 tRNA-His K14226 tRNA-His; tRNA His
D LC40_0389 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D LC40_0881 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D LC40_0161 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D LC40_0380 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D LC40_0869 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D LC40_0185 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D LC40_0662 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D LC40_0256 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D LC40_0970 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D LC40_0008 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D LC40_0377 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D LC40_0384 tRNA-Met K14230 tRNA-Met; tRNA Met
D LC40_0383 tRNA-Met K14230 tRNA-Met; tRNA Met
D LC40_0385 tRNA-Met K14230 tRNA-Met; tRNA Met
D LC40_0391 tRNA-Met K14230 tRNA-Met; tRNA Met
D LC40_0387 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D LC40_0874 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D LC40_0382 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D LC40_0967 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D LC40_0442 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D LC40_0167 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D LC40_0106 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D LC40_0378 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D LC40_0127 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D LC40_0872 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D LC40_0180 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D LC40_0873 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D LC40_0376 tRNA-Val K14237 tRNA-Val; tRNA Val
D LC40_0875 tRNA-Val K14237 tRNA-Val; tRNA Val
D LC40_0971 tRNA-Val K14237 tRNA-Val; tRNA Val
D LC40_0194 Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS) K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D LC40_0945 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D LC40_0944 Glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D LC40_0353 Alanyl-tRNA synthase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D LC40_0548 Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D LC40_0769 Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D LC40_0554 Glycyl-tRNA synthetase beta subunit (Glycine--tRNA ligase beta subunit) (GlyRS) K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D LC40_1160 Threonyl-tRNA synthase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D LC40_0050 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D LC40_0195 Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D LC40_0136 Methionyl-tRNA synthase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D LC40_0810 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D LC40_0342 Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D LC40_0860 Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D LC40_0407 Putative uncharacterized protein K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D LC40_0159 Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D LC40_0850 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D LC40_0547 Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D LC40_0832 Phenylalanyl-tRNA synthase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D LC40_0053 Tyrosyl-tRNA synthetase (Tyrosine--tRNA ligase) (TyrRS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D LC40_0052 Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:lfr03060]
D LC40_0956 Preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D LC40_0833 Oxa1 family cytochrome oxidase biogenesis protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D LC40_1169 Putative uncharacterized protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D LC40_0233 Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D LC40_0799 Sec family type I general secretory pathway protein signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D LC40_0800 Signal recognition particle receptor K03110 ftsY; fused signal recognition particle receptor
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:lfr04122]
D LC40_0337 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D LC40_0521 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D LC40_0408 tRNA methyl transferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D LC40_0699 Molybdopterin converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D LC40_0698 Molybdenum (Mo2+) cofactor biosynthesis enzyme K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D LC40_0338 Probable thiamine biosynthesis protein thiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
C 03050 Proteasome
C 03018 RNA degradation [PATH:lfr03018]
D LC40_0259 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D LC40_0262 Exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D LC40_0151 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D LC40_0576 DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D LC40_0978 Beta-lactamase domain-containing protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D LC40_0422 Metallo-beta-lactamase superfamily protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D LC40_0507 Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) K04043 dnaK; molecular chaperone DnaK
D LC40_0230 60 kDa chaperonin (Protein Cpn60) (groEL protein) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D LC40_0210 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:lfr03030]
D LC40_0205 DNA-directed DNA polymerase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D LC40_0419 DNA-directed DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D LC40_0002 DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D LC40_0589 Ribonuclease HII (RNase HII) K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D LC40_0354 Ribonuclease HIII (RNase HIII) K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D LC40_0841 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D LC40_0947 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:lfr03410]
D LC40_1153 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D LC40_0840 DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D LC40_0114 Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D LC40_0841 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D LC40_0433 Single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D LC40_0947 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:lfr03420]
D LC40_0153 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D LC40_0248 Excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D LC40_0429 UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) K03703 uvrC; excinuclease ABC subunit C
D LC40_0948 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D LC40_1046 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D LC40_0131 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D LC40_0841 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D LC40_0947 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:lfr03430]
D LC40_0348 DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
D LC40_0355 DNA mismatch repair protein MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D LC40_0349 DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D LC40_0948 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D LC40_1046 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D LC40_0131 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D LC40_0817 Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D LC40_0433 Single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D LC40_0002 DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D LC40_0205 DNA-directed DNA polymerase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D LC40_0419 DNA-directed DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D LC40_0947 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:lfr03440]
D LC40_0433 Single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D LC40_0003 DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
D LC40_0553 DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O)
D LC40_0841 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D LC40_0350 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D LC40_0412 Exodeoxyribonuclease V alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D LC40_0002 DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D LC40_0205 DNA-directed DNA polymerase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D LC40_0419 DNA-directed DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:lfr02010]
D LC40_0621 Glycine/betaine ABC superfamily ATP binding cassette transporter substrate binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D LC40_0620 ABC superfamily ATP binding cassette transporter ABC protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D LC40_0798 Phosphate ABC transporter substrate-binding component K02040 pstS; phosphate transport system substrate-binding protein
D LC40_0797 Phosphate ABC superfamily ATP binding cassette transporter, membrane protein K02037 pstC; phosphate transport system permease protein
D LC40_0796 Phosphate ABC superfamily ATP binding cassette transporter, membrane protein K02038 pstA; phosphate transport system permease protein
D LC40_0775 Phosphate ABC transporter ATP-binding component K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D LC40_0054 Glutamate ABC superfamily ATP binding cassette transporter, membrane protein K10036 glnH; glutamine transport system substrate-binding protein
D LC40_1146 Amino acid ABC transporter substrate-binding component K02424 tcyA; L-cystine transport system substrate-binding protein
D LC40_0758 Amino acid ABC superfamily ATP binding cassette transporter, binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D LC40_1145 Amino acid ABC transporter ATP-binding component K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D LC40_0538 ABC transporter substrate binding component K16957 tcyK; L-cystine transport system substrate-binding protein
D LC40_0868 Glutamate ABC transporter substrate-binding component K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D LC40_0428 ABC superfamily ATP binding cassette transporter, ABC protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D LC40_0524 ABC superfamily ATP binding cassette transporter, binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D LC40_0129 ABC superfamily ATP binding cassette transporter, binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D LC40_0039 ABC superfamily ATP binding cassette transporter, binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D LC40_0040 ABC transporter ATP-binding component K02071 metN; D-methionine transport system ATP-binding protein
D LC40_0952 ABC transporter permease component K16785 ecfT; energy-coupling factor transport system permease protein
D LC40_0954 ABC transporter ATP-binding component K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D LC40_0953 ABC superfamily ATP binding cassette transporter, ABC protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D LC40_0457 ABC transporter permease component K11051 cylB; multidrug/hemolysin transport system permease protein
D LC40_0456 ABC transporter ATP-binding component K11050 cylA; multidrug/hemolysin transport system ATP-binding protein
D LC40_0296 Multidrug ABC transporter ATP-binding and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D LC40_0297 Possible xenobiotic-transporting ATPase K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D LC40_0200 ABC superfamily ATP binding cassette transporter, ABC/membrane protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D LC40_0199 ABC superfamily ATP binding cassette transporter, ABC/membrane protein K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
C 02060 Phosphotransferase system (PTS) [PATH:lfr02060]
D LC40_0886 Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D LC40_1103 PTS system enzyme I K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D LC40_0998 Protein-N(Pi)-phosphohistidine--sugar phosphotransferase K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D LC40_0732 PTS system cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D LC40_0274 PTS system mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D LC40_0275 PTS system mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D LC40_0276 PTS system mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D LC40_1109 PTS system galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
C 03070 Bacterial secretion system [PATH:lfr03070]
D LC40_0956 Preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D LC40_0833 Oxa1 family cytochrome oxidase biogenesis protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D LC40_1169 Putative uncharacterized protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D LC40_0233 Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D LC40_0800 Signal recognition particle receptor K03110 ftsY; fused signal recognition particle receptor
D LC40_0799 Sec family type I general secretory pathway protein signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:lfr02020]
D LC40_0798 Phosphate ABC transporter substrate-binding component K02040 pstS; phosphate transport system substrate-binding protein
D LC40_0013 S1 family peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D LC40_0009 Sensor protein K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D LC40_0001 Chromosomal replication initiator protein dnaA K02313 dnaA; chromosomal replication initiator protein
D LC40_0046 D-alanine--poly(Phosphoribitol) ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D LC40_0045 D-alanyl transfer protein K03739 dltB; membrane protein involved in D-alanine export
D LC40_0044 D-alanine transfer protein DltD K03740 dltD; D-alanine transfer protein
D LC40_0986 Protein of hypothetical function DUF470 K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D LC40_0835 Two-component sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D LC40_0690 Nitrate reductase alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D LC40_0689 Nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D LC40_0693 Sensor histidine kinase K07683 nreB; two-component system, NarL family, sensor histidine kinase NreB [EC:2.7.13.3]
D LC40_0823 Glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D LC40_0643 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D LC40_0213 Two-component response regulator K07719 glnL; two-component system, response regulator GlnL
D LC40_0197 Cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D LC40_0198 Cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:lfr02024]
D LC40_1013 S-ribosylhomocysteine lyase (Autoinducer-2 production protein luxS) (AI-2 synthesis protein) K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D LC40_0074 Putative glycosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D LC40_0682 Transcriptional regulator K20375 ropB; HTH-type transcriptional regulator, pheromone-responsive regulator
D LC40_0833 Oxa1 family cytochrome oxidase biogenesis protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D LC40_1169 Putative uncharacterized protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D LC40_0956 Preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D LC40_0233 Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D LC40_0800 Signal recognition particle receptor K03110 ftsY; fused signal recognition particle receptor
D LC40_0799 Sec family type I general secretory pathway protein signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D LC40_0319 Putative uncharacterized protein K20391 plcR; HTH-type transcriptional regulator, pleiotropic regulator of extracellular virulence genes
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly [PATH:lfr02040]
D LC40_1146 Amino acid ABC transporter substrate-binding component K02424 tcyA; L-cystine transport system substrate-binding protein
D LC40_0758 Amino acid ABC superfamily ATP binding cassette transporter, binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D LC40_0556 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D LC40_0259 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:lfr01501]
D LC40_1005 Putative uncharacterized protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D LC40_0765 Penicillin binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D LC40_0849 Penicillin binding protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
C 01502 Vancomycin resistance [PATH:lfr01502]
D LC40_0318 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D LC40_0152 Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D LC40_0150 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D LC40_0401 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:lfr01503]
D LC40_0013 S1 family peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D LC40_0046 D-alanine--poly(Phosphoribitol) ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D LC40_0045 D-alanyl transfer protein K03739 dltB; membrane protein involved in D-alanine export
D LC40_0044 D-alanine transfer protein DltD K03740 dltD; D-alanine transfer protein
D LC40_0986 Protein of hypothetical function DUF470 K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:lfr01000]
C 01001 Protein kinases [BR:lfr01001]
D LC40_0808 Serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D LC40_0009 Sensor protein K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D LC40_0835 Two-component sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D LC40_0693 Sensor histidine kinase K07683 nreB; two-component system, NarL family, sensor histidine kinase NreB [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins
C 01002 Peptidases and inhibitors [BR:lfr01002]
D LC40_0190 Bleomycin hydrolase K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D LC40_1040 GMP synthase (Glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D LC40_0904 Putative uncharacterized protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D LC40_0364 Putative uncharacterized protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D LC40_0094 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D LC40_0527 Glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D LC40_0268 Glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D LC40_0438 Asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D LC40_1164 Asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D LC40_0616 Choloylglycine hydrolase K24041 yxeI; penicillin V amidase [EC:3.5.1.11]
D LC40_0652 Dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-]
D LC40_0730 Dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-]
D LC40_1116 Dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-]
D LC40_0977 Putative uncharacterized protein K07052 K07052; CAAX protease family protein
D LC40_0125 Membrane alanyl aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D LC40_1124 Oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D LC40_1149 M13 family peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D LC40_0857 Dipeptidase K01274 pepV; beta-Ala-Xaa dipeptidase [EC:3.4.13.-]
D LC40_0523 Peptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D LC40_0667 Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D LC40_0041 Peptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D LC40_0568 Peptidase T (Tripeptide aminopeptidase) (Aminotripeptidase) (Tripeptidase) K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D LC40_0122 Allantoate amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D LC40_0920 Methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D LC40_0361 Xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D LC40_0819 Possible Xaa-Pro dipeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D LC40_0156 M41 family endopeptidase FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D LC40_0149 Probable like protein protease htpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D LC40_0482 Zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D LC40_0013 S1 family peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D LC40_1006 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D LC40_0083 Serine family D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D LC40_1057 Xaa-Pro dipeptidyl-peptidase K01281 pepX; X-Pro dipeptidyl-peptidase [EC:3.4.14.11]
D LC40_0417 Putative uncharacterized protein K07177 K07177; Lon-like protease
D LC40_0474 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D LC40_1058 Possible prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
C 01003 Glycosyltransferases [BR:lfr01003]
D LC40_0885 Glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D LC40_0884 Glycosyltransferase K13678 cpoA; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-galactosyltransferase [EC:2.4.1.-]
D LC40_0765 Penicillin binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D LC40_0849 Penicillin binding protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D LC40_0037 Poly(Glycerol-phosphate) alpha-glucosyltransferase K00712 tagE; poly(glycerol-phosphate) alpha-glucosyltransferase [EC:2.4.1.52]
D LC40_0038 Poly(Glycerol-phosphate) alpha-glucosyltransferase K00712 tagE; poly(glycerol-phosphate) alpha-glucosyltransferase [EC:2.4.1.52]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:lfr01005]
D LC40_0910 UDP-D-galactose:(Glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase K02840 waaB; UDP-D-galactose:(glucosyl)LPS alpha-1,6-D-galactosyltransferase [EC:2.4.1.-]
D LC40_0074 Putative glycosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D LC40_0901 Glycosyltransferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D LC40_0903 Glycosyltransferase K12999 rgpI; glucosyltransferase [EC:2.4.1.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:lfr01011]
D LC40_0148 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D LC40_0313 Putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D LC40_0264 UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D LC40_0842 UDP-N-acetylmuramate--L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase) K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D LC40_0402 UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D LC40_0318 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D LC40_0152 Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D LC40_0401 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D LC40_0966 Undecaprenyl-diphosphatase (Undecaprenyl pyrophosphate phosphatase) (Bacitracin resistance protein) K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D LC40_0765 Penicillin binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D LC40_0849 Penicillin binding protein K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D LC40_0400 Penicillin-binding protein 1 K08724 pbpB; penicillin-binding protein 2B
D LC40_0826 Penicillin binding protein K21465 pbpA; penicillin-binding protein A
D LC40_1006 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D LC40_0083 Serine family D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D LC40_0904 Putative uncharacterized protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D LC40_0364 Putative uncharacterized protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
C 01004 Lipid biosynthesis proteins [BR:lfr01004]
D LC40_0222 Possible [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D LC40_0224 3-oxoacyl-[acyl-carrier protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D LC40_0223 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D LC40_0221 (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D LC40_0227 Enoyl-[acyl-carrier protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D LC40_1036 Putative uncharacterized protein K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:lfr01006]
D LC40_0816 Geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D LC40_0480 Undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D LC40_0824 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D LC40_0713 Prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
C 01007 Amino acid related enzymes [BR:lfr01007]
D LC40_0194 Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS) K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D LC40_0053 Tyrosyl-tRNA synthetase (Tyrosine--tRNA ligase) (TyrRS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D LC40_0052 Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D LC40_0195 Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D LC40_0850 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D LC40_0136 Methionyl-tRNA synthase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D LC40_0407 Putative uncharacterized protein K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D LC40_0342 Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D LC40_0860 Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D LC40_0159 Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D LC40_0548 Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D LC40_0769 Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D LC40_0547 Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D LC40_0554 Glycyl-tRNA synthetase beta subunit (Glycine--tRNA ligase beta subunit) (GlyRS) K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D LC40_0050 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D LC40_1160 Threonyl-tRNA synthase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D LC40_0353 Alanyl-tRNA synthase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D LC40_0832 Phenylalanyl-tRNA synthase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D LC40_0239 LL-diaminopimelate aminotransferase K08969 mtnE; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117]
D LC40_0563 Amino acid aminotransferase K00841 patA; aminotransferase [EC:2.6.1.-]
D LC40_0099 Possible aspartate transaminase K00841 patA; aminotransferase [EC:2.6.1.-]
D LC40_0022 Aromatic amino acid aminotransferase K00841 patA; aminotransferase [EC:2.6.1.-]
D LC40_0514 Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D LC40_0617 Aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D LC40_0488 Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D LC40_0245 Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D LC40_0516 Phosphoserine aminotransferase (Phosphohydroxythreonine aminotransferase) (PSAT) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D LC40_0120 Possible serine--pyruvate transaminase K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:lfr00194]
D LC40_0312 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D LC40_0311 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D LC40_0310 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:lfr03000]
D LC40_0271 Transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D LC40_0362 Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D LC40_0499 PurR family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D LC40_0854 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D LC40_1140 LacI family transcriptional regulator LacR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D LC40_1110 Transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D LC40_1070 Operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D LC40_1155 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D LC40_0982 Transcriptional repressor K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D LC40_1114 Transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D LC40_0929 Putative uncharacterized protein K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D LC40_1055 Fur family transcriptional regulator K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D LC40_0228 Biotin-[acetyl-CoA-carboxylase] ligase and biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D LC40_0319 Putative uncharacterized protein K20391 plcR; HTH-type transcriptional regulator, pleiotropic regulator of extracellular virulence genes
D LC40_0682 Transcriptional regulator K20375 ropB; HTH-type transcriptional regulator, pheromone-responsive regulator
D LC40_0142 Pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D LC40_0060 Chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LC40_0061 Stage 0 DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LC40_0505 Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D LC40_1106 DeoR family transcriptional regulator K05346 deoR; deoxyribonucleoside regulator
C 03021 Transcription machinery [BR:lfr03021]
D LC40_0955 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D LC40_0962 DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D LC40_0961 DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (Transcriptase subunit beta') (RNA polymerase subunit beta') K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D LC40_0556 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D LC40_0494 Transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C 03019 Messenger RNA biogenesis [BR:lfr03019]
D LC40_0803 Ribonuclease 3 (Ribonuclease III) (RNase III) K03685 rnc; ribonuclease III [EC:3.1.26.3]
D LC40_0978 Beta-lactamase domain-containing protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D LC40_0422 Metallo-beta-lactamase superfamily protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D LC40_0262 Exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D LC40_0847 HD-superfamily hydrolase K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D LC40_0151 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D LC40_0352 ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
D LC40_0576 DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D LC40_0259 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D LC40_0507 Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) K04043 dnaK; molecular chaperone DnaK
D LC40_0230 60 kDa chaperonin (Protein Cpn60) (groEL protein) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D LC40_0210 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D LC40_0252 UPF0042 nucleotide-binding protein K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:lfr03011]
D LC40_0577 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D LC40_0476 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D LC40_0958 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D LC40_0957 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D LC40_0104 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0877 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0117 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0374 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0164 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0878 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0118 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0375 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0105 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0165 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0102 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0160 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0882 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0115 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0372 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0103 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D LC40_0116 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D LC40_0163 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D LC40_0373 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D LC40_0879 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:lfr03009]
D LC40_0803 Ribonuclease 3 (Ribonuclease III) (RNase III) K03685 rnc; ribonuclease III [EC:3.1.26.3]
D LC40_0552 GTP-binding protein Era K03595 era; GTPase
D LC40_0430 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
D LC40_0494 Transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D LC40_0138 Dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D LC40_0809 Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D LC40_0533 Putative uncharacterized protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D LC40_0059 Glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D LC40_0207 Putative uncharacterized protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D LC40_0398 rRNA methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D LC40_0942 TrmA family tRNA (Uracil-5-)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D LC40_0984 Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LC40_1074 Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LC40_0396 Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LC40_0794 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D LC40_0151 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D LC40_0352 ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
D LC40_0807 Ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D LC40_0578 GTP-binding protein engA K03977 engA; GTPase
D LC40_0588 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A
D LC40_1047 GTP-binding protein HflX K03665 hflX; GTPase
D LC40_0837 GTP-binding protein K06948 yqeH; 30S ribosome assembly GTPase
D LC40_0304 Putative uncharacterized protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D LC40_0534 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D LC40_0493 Ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP
D LC40_0062 GTP-binding translation factor YchF K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:lfr03016]
D LC40_0431 Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease) K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D LC40_0581 Polynucleotide adenylyltransferase region K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D LC40_0407 Putative uncharacterized protein K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D LC40_0860 Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D LC40_0136 Methionyl-tRNA synthase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D LC40_0850 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D LC40_0159 Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D LC40_0548 Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D LC40_0353 Alanyl-tRNA synthase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D LC40_0769 Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D LC40_1160 Threonyl-tRNA synthase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D LC40_0050 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D LC40_0195 Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D LC40_0342 Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D LC40_0547 Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D LC40_0832 Phenylalanyl-tRNA synthase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D LC40_0053 Tyrosyl-tRNA synthetase (Tyrosine--tRNA ligase) (TyrRS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D LC40_0052 Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D LC40_0844 tRNA (guanine-N(7)-)-methyltransferase (tRNA(m7G46)-methyltransferase) K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D LC40_0337 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D LC40_0521 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D LC40_0304 Putative uncharacterized protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D LC40_0824 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D LC40_1167 tRNA modification GTP-binding protein TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D LC40_1166 Glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D LC40_1170 Ribonuclease P protein component (RNaseP protein) (RNase P protein) (Protein C5) K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D LC40_0554 Glycyl-tRNA synthetase beta subunit (Glycine--tRNA ligase beta subunit) (GlyRS) K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D LC40_0194 Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS) K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D LC40_1115 YbaK/EbsC family protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D LC40_0408 tRNA methyl transferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D LC40_0338 Probable thiamine biosynthesis protein thiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D LC40_0155 Cell cycle protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D LC40_0220 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D LC40_0836 UPF0348 protein K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
D LC40_0262 Exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C 03012 Translation factors [BR:lfr03012]
D LC40_0495 Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D LC40_0229 ABC superfamily ATP binding cassette transporter, ABC protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D LC40_0477 Elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D LC40_0424 Elongation factor Tu (EF-Tu) K02358 tuf; elongation factor Tu
D LC40_0959 Elongation factor G (EF-G) K02355 fusA; elongation factor G
D LC40_0302 Peptide chain release factor 1 (RF-1) K02835 prfA; peptide chain release factor 1
D LC40_0479 Ribosome recycling factor K02838 frr; ribosome recycling factor
D LC40_0303 Protein-(Glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D LC40_0234 Peptide chain release factor RF2 K02836 prfB; peptide chain release factor 2
D LC40_0898 Peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:lfr03110]
D LC40_0963 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D LC40_0023 ATP-dependent Clp protease ATP-binding subunit K04086 clpL; ATP-dependent Clp protease ATP-binding subunit ClpL
D LC40_0426 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D LC40_0507 Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) K04043 dnaK; molecular chaperone DnaK
D LC40_0230 60 kDa chaperonin (Protein Cpn60) (groEL protein) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D LC40_0508 Chaperone protein dnaJ K03686 dnaJ; molecular chaperone DnaJ
D LC40_0157 Chaperonin HslO K04083 hslO; molecular chaperone Hsp33
D LC40_0506 Protein grpE (HSP-70 cofactor) K03687 GRPE; molecular chaperone GrpE
D LC40_0013 S1 family peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D LC40_0156 M41 family endopeptidase FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D LC40_0846 Peptidylprolyl isomerase K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D LC40_0356 Thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:lfr04131]
D LC40_0659 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D LC40_0257 Glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D LC40_0571 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:lfr03032]
D LC40_0001 Chromosomal replication initiator protein dnaA K02313 dnaA; chromosomal replication initiator protein
D LC40_0839 Replication initiation and membrane attachment protein DnaB K03346 dnaB; replication initiation and membrane attachment protein
D LC40_0838 Primosomal protein DnaI K11144 dnaI; primosomal protein DnaI
D LC40_0002 DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D LC40_0419 DNA-directed DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D LC40_0205 DNA-directed DNA polymerase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D LC40_0589 Ribonuclease HII (RNase HII) K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D LC40_0354 Ribonuclease HIII (RNase HIII) K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D LC40_0841 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D LC40_0947 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D LC40_0005 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D LC40_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D LC40_0594 Topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D LC40_0593 ATP-hydrolyzing DNA topoisomerase K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D LC40_0591 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:lfr03036]
D LC40_0803 Ribonuclease 3 (Ribonuclease III) (RNase III) K03685 rnc; ribonuclease III [EC:3.1.26.3]
D LC40_0001 Chromosomal replication initiator protein dnaA K02313 dnaA; chromosomal replication initiator protein
D LC40_0574 ScpA/B protein K05896 scpA; segregation and condensation protein A
D LC40_0404 Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D LC40_0154 Septum formation initiator K13052 divIC; cell division protein DivIC
D LC40_0399 Cell division protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D LC40_0403 Cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D LC40_0416 Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D LC40_0405 Cell division protein ftsZ K03531 ftsZ; cell division protein FtsZ
D LC40_0336 Cell division regulatory protein K06286 ezrA; septation ring formation regulator
D LC40_0314 Cell shape determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D LC40_0344 Cell shape determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D LC40_0345 Cell shape determining protein MreC K03570 mreC; rod shape-determining protein MreC
D LC40_0315 Rod-shape determining protein K05837 rodA; rod shape determining protein RodA
D LC40_0060 Chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LC40_0061 Stage 0 DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LC40_0594 Topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D LC40_0593 ATP-hydrolyzing DNA topoisomerase K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D LC40_1166 Glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D LC40_0059 Glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D LC40_0573 Integrase XerD K04763 xerD; integrase/recombinase XerD
D LC40_0254 Putative sporulation transcription regulator whiA K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:lfr03400]
D LC40_1153 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D LC40_0840 DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D LC40_0114 Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D LC40_0433 Single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D LC40_0947 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D LC40_0841 DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
D LC40_0248 Excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D LC40_0429 UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) K03703 uvrC; excinuclease ABC subunit C
D LC40_0948 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D LC40_1046 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D LC40_0131 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D LC40_0962 DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D LC40_0961 DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (Transcriptase subunit beta') (RNA polymerase subunit beta') K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D LC40_0955 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D LC40_0153 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D LC40_0348 DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
D LC40_0355 DNA mismatch repair protein MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D LC40_0349 DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D LC40_0817 Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D LC40_0002 DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D LC40_0419 DNA-directed DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D LC40_0205 DNA-directed DNA polymerase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D LC40_0412 Exodeoxyribonuclease V alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D LC40_0350 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D LC40_0047 Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D LC40_0192 DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms
D LC40_0003 DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
D LC40_0553 DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O)
D LC40_0815 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D LC40_0029 ATP-dependent helicase/nuclease subunit A (ATP-dependent helicase/nuclease addA) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D LC40_0785 Putative uncharacterized protein K15342 cas1; CRISP-associated protein Cas1
D LC40_0468 Putative uncharacterized protein K15342 cas1; CRISP-associated protein Cas1
D LC40_0005 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D LC40_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D LC40_0591 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D LC40_0576 DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D LC40_1016 UMUC domain protein DNA-repair protein K03502 umuC; DNA polymerase V
D LC40_0500 Possible DNA-directed DNA polymerase K03502 umuC; DNA polymerase V
D LC40_0474 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D LC40_0917 Possible recombination regulator RecX K03565 recX; regulatory protein
D LC40_1062 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D LC40_0204 Ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D LC40_1060 Ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D LC40_0203 Ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D LC40_1061 Ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D LC40_0351 Phosphoesterase domain-containing protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:lfr03029]
D LC40_0495 Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D LC40_0477 Elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D LC40_0424 Elongation factor Tu (EF-Tu) K02358 tuf; elongation factor Tu
D LC40_0959 Elongation factor G (EF-G) K02355 fusA; elongation factor G
D LC40_0552 GTP-binding protein Era K03595 era; GTPase
D LC40_0053 Tyrosyl-tRNA synthetase (Tyrosine--tRNA ligase) (TyrRS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D LC40_0860 Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D LC40_0548 Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D LC40_0850 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D LC40_0945 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D LC40_0944 Glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D LC40_0507 Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) K04043 dnaK; molecular chaperone DnaK
D LC40_0506 Protein grpE (HSP-70 cofactor) K03687 GRPE; molecular chaperone GrpE
D LC40_0230 60 kDa chaperonin (Protein Cpn60) (groEL protein) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D LC40_0508 Chaperone protein dnaJ K03686 dnaJ; molecular chaperone DnaJ
D LC40_0337 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D LC40_0521 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D LC40_0833 Oxa1 family cytochrome oxidase biogenesis protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D LC40_1169 Putative uncharacterized protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:lfr02000]
D LC40_0296 Multidrug ABC transporter ATP-binding and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D LC40_0297 Possible xenobiotic-transporting ATPase K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D LC40_0200 ABC superfamily ATP binding cassette transporter, ABC/membrane protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D LC40_0199 ABC superfamily ATP binding cassette transporter, ABC/membrane protein K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D LC40_0582 ABC transporter ATP-binding component K15738 uup; ABC transport system ATP-binding/permease protein
D LC40_0621 Glycine/betaine ABC superfamily ATP binding cassette transporter substrate binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D LC40_0620 ABC superfamily ATP binding cassette transporter ABC protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D LC40_0798 Phosphate ABC transporter substrate-binding component K02040 pstS; phosphate transport system substrate-binding protein
D LC40_0797 Phosphate ABC superfamily ATP binding cassette transporter, membrane protein K02037 pstC; phosphate transport system permease protein
D LC40_0796 Phosphate ABC superfamily ATP binding cassette transporter, membrane protein K02038 pstA; phosphate transport system permease protein
D LC40_0775 Phosphate ABC transporter ATP-binding component K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D LC40_0054 Glutamate ABC superfamily ATP binding cassette transporter, membrane protein K10036 glnH; glutamine transport system substrate-binding protein
D LC40_1146 Amino acid ABC transporter substrate-binding component K02424 tcyA; L-cystine transport system substrate-binding protein
D LC40_0758 Amino acid ABC superfamily ATP binding cassette transporter, binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D LC40_1145 Amino acid ABC transporter ATP-binding component K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D LC40_0538 ABC transporter substrate binding component K16957 tcyK; L-cystine transport system substrate-binding protein
D LC40_0868 Glutamate ABC transporter substrate-binding component K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D LC40_0428 ABC superfamily ATP binding cassette transporter, ABC protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D LC40_0524 ABC superfamily ATP binding cassette transporter, binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D LC40_0129 ABC superfamily ATP binding cassette transporter, binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D LC40_0039 ABC superfamily ATP binding cassette transporter, binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D LC40_0040 ABC transporter ATP-binding component K02071 metN; D-methionine transport system ATP-binding protein
D LC40_1065 ABC superfamily ATP binding cassette transporter, binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D LC40_0347 Glutamine ABC transporter substrate binding component K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D LC40_0539 ABC transporter substrate binding component K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D LC40_0663 Amino acid ABC superfamily ATP binding cassette transporter substrate binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D LC40_0346 Glutamine ABC transporter permease component K02029 ABC.PA.P; polar amino acid transport system permease protein
D LC40_0111 Heme ABC transporter, heme-binding protein isdE K25113 htsA; heme transport system substrate-binding protein
D LC40_0112 ABC superfamily ATP binding cassette transporter, ABC protein K25115 htsC; heme transport system ATP-binding protein [EC:7.6.2.5]
D LC40_0706 Iron chelating ABC superfamily ATP binding cassette transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D LC40_0700 Iron (Fe) ABC superfamily ATP binding cassette transporter, membrane protein K02015 ABC.FEV.P; iron complex transport system permease protein
D LC40_0701 ABC superfamily ATP binding cassette transporter, ABC protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D LC40_0952 ABC transporter permease component K16785 ecfT; energy-coupling factor transport system permease protein
D LC40_0954 ABC transporter ATP-binding component K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D LC40_0953 ABC superfamily ATP binding cassette transporter, ABC protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D LC40_1084 ABC superfamily ATP binding cassette transporter ABC protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D LC40_0140 ABC superfamily ATP binding cassette transporter, binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D LC40_0141 Zinc/iron ABC transporter permease component K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D LC40_0457 ABC transporter permease component K11051 cylB; multidrug/hemolysin transport system permease protein
D LC40_0456 ABC transporter ATP-binding component K11050 cylA; multidrug/hemolysin transport system ATP-binding protein
D LC40_0845 ABC superfamily ATP binding cassette transporter permease protein K25157 ecsB; ABC-2 type transport system permease protein
D LC40_0032 ABC transporter permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D LC40_0893 ABC transporter ATP-binding component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D LC40_1031 ABC transporter permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D LC40_1136 ABC transporter permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D LC40_1158 ABC superfamily ATP binding cassette transporter, membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D LC40_1032 ABC superfamily ATP binding cassette transporter permease and ABC protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D LC40_0710 ABC superfamily ATP binding cassette transporter, ABC protein K09013 sufC; Fe-S cluster assembly ATP-binding protein
D LC40_1067 Na+ driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D LC40_0834 Na+ driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D LC40_1104 Fucose permease K02429 fucP; MFS transporter, FHS family, L-fucose permease
D LC40_0113 Major facilitator superfamily transporter permease K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D LC40_0602 Oxalate-formate antiporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D LC40_0630 Major facilitator superfamily MFS_1 transporter K03535 gudP; MFS transporter, ACS family, glucarate transporter
D LC40_0719 Transport protein K26745 ydiM_N; MFS transporter, AAHS family, multidrug transporter
D LC40_1120 Major facilitator transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D LC40_1090 Glycerol-3-phosphate transport protein K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D LC40_0697 MFS family major facilitator transporter, nitrate:nitrite antiporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D LC40_0134 Multidrug transport protein K08153 blt; MFS transporter, DHA1 family, multidrug resistance protein
D LC40_0735 Multidrug transport protein K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein
D LC40_1021 Major facilitator transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D LC40_0725 MFS family major facilitator transporter K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D LC40_0734 Multidrug transport protein K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D LC40_0862 Multidrug transport protein K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D LC40_0930 Possible ProP protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D LC40_0607 Transport protein K08368 yaaU; MFS transporter, putative metabolite transport protein
D LC40_0623 Metabolite transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D LC40_0627 Transport protein K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D LC40_0886 Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D LC40_1103 PTS system enzyme I K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D LC40_0998 Protein-N(Pi)-phosphohistidine--sugar phosphotransferase K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D LC40_0732 PTS system cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D LC40_1109 PTS system galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
D LC40_0274 PTS system mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D LC40_0275 PTS system mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D LC40_0276 PTS system mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D LC40_0444 Putative uncharacterized protein K10716 kch; voltage-gated potassium channel
D LC40_1066 Ammonium transporter K03320 amt; ammonium transporter, Amt family
D LC40_0360 MscS mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel
D LC40_1075 MIT family metal ion transporter CorA K03284 corA; magnesium transporter
D LC40_1119 Possible hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D LC40_0736 Possible hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D LC40_0177 Putative uncharacterized protein K21449 ata; trimeric autotransporter adhesin
D LC40_0334 Putative uncharacterized protein K21449 ata; trimeric autotransporter adhesin
D LC40_0497 Major facilitator superfamily permease K16211 malY; maltose/moltooligosaccharide transporter
D LC40_0016 Putative sugar transport protein K16211 malY; maltose/moltooligosaccharide transporter
D LC40_0972 APC family amino acid-polyamine-organocation transporter K11733 lysP; lysine-specific permease
D LC40_1165 Amino acid permease K11733 lysP; lysine-specific permease
D LC40_0543 Amino acid transport protein K16235 mmuP; S-methylmethionine transporter
D LC40_0605 Arginine-ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D LC40_0217 Arginine-ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D LC40_0976 Cation efflux system protein K16264 czcD; cobalt-zinc-cadmium efflux system protein
D LC40_0281 Sugar transport protein K05340 glcU; glucose uptake protein
D LC40_0339 Permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D LC40_0684 Gluconate transport protein K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D LC40_1125 Proton/sodium-glutamate symport protein K11102 gltP; proton glutamate symport protein
D LC40_0932 NhaC family sodium:proton (Na+:H+) antiporter K03315 nhaC; Na+:H+ antiporter, NhaC family
D LC40_1085 Na-H antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D LC40_0130 CPA2 family monovalent cation:proton (H+) antiporter-2 K26730 napA; Na+:H+ antiporter
D LC40_0565 Potassium transport protein K03498 trkH; trk/ktr system potassium uptake protein
D LC40_0309 Uracil transport protein K02824 uraA; uracil permease
D LC40_1076 Xanthine-uracil transport protein K16169 pbuX; xanthine permease
D LC40_1150 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D LC40_0057 Nucleoside transport protein K16323 yxjA; purine nucleoside transport protein
D LC40_0261 CPA2 family monovalent cation:proton (H+) antiporter-2 K03281 clcA; chloride channel protein, CIC family
D LC40_0357 Chloride channel protein K03281 clcA; chloride channel protein, CIC family
D LC40_1097 Nickel transport protein K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D LC40_1159 Manganese transport protein K03322 mntH; manganese transport protein
D LC40_0752 Putative uncharacterized protein K03325 ACR3; arsenite transporter
D LC40_0188 Malate transport protein K24180 mleP; malate permease and related proteins
D LC40_1023 Auxin efflux carrier K24180 mleP; malate permease and related proteins
D LC40_0727 Potassium transport protein K03549 kup; KUP system potassium uptake protein
D LC40_0084 LIV-E family branched chain amino acid exporter AzlC K26605 azlC; branched chain amino acid efflux pump
D LC40_0416 Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D LC40_0690 Nitrate reductase alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D LC40_0689 Nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D LC40_0067 Capsular polysaccharide biosynthesis protein cpsC K19420 epsA; protein tyrosine kinase modulator
D LC40_1049 Nicotinamide mononucleotide transport protein K03811 pnuC; nicotinamide mononucleotide transporter
D LC40_1148 Putative uncharacterized protein K03811 pnuC; nicotinamide mononucleotide transporter
C 02044 Secretion system [BR:lfr02044]
D LC40_0418 Competence protein K02238 comEC; competence protein ComEC
D LC40_0366 Competence protein K02243 comGA; competence protein ComGA
D LC40_0367 Competence protein K02244 comGB; competence protein ComGB
D LC40_0368 Putative uncharacterized protein K02247 comGE; competence protein ComGE
D LC40_0233 Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D LC40_0956 Preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D LC40_0799 Sec family type I general secretory pathway protein signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D LC40_0800 Signal recognition particle receptor K03110 ftsY; fused signal recognition particle receptor
D LC40_0833 Oxa1 family cytochrome oxidase biogenesis protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D LC40_1169 Putative uncharacterized protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:lfr02042]
D LC40_1119 Possible hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D LC40_0736 Possible hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:lfr02022]
D LC40_0009 Sensor protein K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D LC40_0835 Two-component sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D LC40_0279 Two-component response regulator K02483 K02483; two-component system, OmpR family, response regulator
D LC40_0693 Sensor histidine kinase K07683 nreB; two-component system, NarL family, sensor histidine kinase NreB [EC:2.7.13.3]
D LC40_0213 Two-component response regulator K07719 glnL; two-component system, response regulator GlnL
C 02035 Bacterial motility proteins [BR:lfr02035]
D LC40_1146 Amino acid ABC transporter substrate-binding component K02424 tcyA; L-cystine transport system substrate-binding protein
D LC40_0758 Amino acid ABC superfamily ATP binding cassette transporter, binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:lfr04812]
D LC40_0314 Cell shape determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D LC40_0344 Cell shape determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D LC40_0405 Cell division protein ftsZ K03531 ftsZ; cell division protein FtsZ
D LC40_0404 Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D LC40_0060 Chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LC40_0061 Stage 0 DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:lfr04147]
D LC40_0259 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D LC40_0257 Glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D LC40_0258 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D LC40_0571 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D LC40_0230 60 kDa chaperonin (Protein Cpn60) (groEL protein) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D LC40_0507 Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) K04043 dnaK; molecular chaperone DnaK
D LC40_1069 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D LC40_0290 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D LC40_0064 Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D LC40_0424 Elongation factor Tu (EF-Tu) K02358 tuf; elongation factor Tu
D LC40_0532 L-lactate dehydrogenase (L-LDH) K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0173 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0246 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0410 Possible L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0923 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D LC40_0643 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D LC40_1028 Argininosuccinate lyase (ASAL) (Arginosuccinase) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D LC40_1029 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D LC40_1142 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D LC40_0728 Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D LC40_0823 Glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D LC40_0585 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D LC40_1147 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D LC40_0096 Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D LC40_0740 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D LC40_1121 Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D LC40_0292 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:lfr02048]
D LC40_0785 Putative uncharacterized protein K15342 cas1; CRISP-associated protein Cas1
D LC40_0468 Putative uncharacterized protein K15342 cas1; CRISP-associated protein Cas1
D LC40_0790 Putative uncharacterized protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D LC40_0464 Putative uncharacterized protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D LC40_0787 Putative uncharacterized protein K19117 csd1; CRISPR-associated protein Csd1
D LC40_0786 Putative uncharacterized protein K19118 csd2; CRISPR-associated protein Csd2
D LC40_0788 Putative uncharacterized protein K19119 cas5d; CRISPR-associated protein Cas5d
D LC40_0466 Putative uncharacterized protein K19123 casA; CRISPR system Cascade subunit CasA
D LC40_0467 Putative uncharacterized protein K19124 casC; CRISPR system Cascade subunit CasC
D LC40_0672 Putative type I site-specific deoxyribonuclease K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D LC40_0369 Putative uncharacterized protein K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D LC40_0680 Restriction endonuclease K01156 res; type III restriction enzyme [EC:3.1.21.5]
D LC40_0681 Methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D LC40_0405 Cell division protein ftsZ K03531 ftsZ; cell division protein FtsZ
D LC40_0314 Cell shape determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D LC40_0344 Cell shape determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D LC40_0594 Topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D LC40_0593 ATP-hydrolyzing DNA topoisomerase K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D LC40_0337 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D LC40_0521 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:lfr01504]
D LC40_1005 Putative uncharacterized protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D LC40_0046 D-alanine--poly(Phosphoribitol) ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D LC40_0045 D-alanyl transfer protein K03739 dltB; membrane protein involved in D-alanine export
D LC40_0044 D-alanine transfer protein DltD K03740 dltD; D-alanine transfer protein
D LC40_0986 Protein of hypothetical function DUF470 K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:lfr03100]
D LC40_0162 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D LC40_0880 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D LC40_0820 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D LC40_0255 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D LC40_0381 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D LC40_0968 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D LC40_0921 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D LC40_0166 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D LC40_0386 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D LC40_0985 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D LC40_0392 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D LC40_0870 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D LC40_0295 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D LC40_0181 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D LC40_0721 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D LC40_0294 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D LC40_0051 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D LC40_0876 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D LC40_0390 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D LC40_0388 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D LC40_0379 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D LC40_0969 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D LC40_0851 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D LC40_0871 tRNA-His K14226 tRNA-His; tRNA His
D LC40_0389 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D LC40_0881 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D LC40_0161 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D LC40_0380 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D LC40_0869 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D LC40_0185 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D LC40_0662 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D LC40_0256 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D LC40_0970 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D LC40_0008 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D LC40_0377 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D LC40_0384 tRNA-Met K14230 tRNA-Met; tRNA Met
D LC40_0383 tRNA-Met K14230 tRNA-Met; tRNA Met
D LC40_0385 tRNA-Met K14230 tRNA-Met; tRNA Met
D LC40_0391 tRNA-Met K14230 tRNA-Met; tRNA Met
D LC40_0387 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D LC40_0874 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D LC40_0382 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D LC40_0967 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D LC40_0442 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D LC40_0167 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D LC40_0106 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D LC40_0378 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D LC40_0127 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D LC40_0872 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D LC40_0180 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D LC40_0873 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D LC40_0376 tRNA-Val K14237 tRNA-Val; tRNA Val
D LC40_0875 tRNA-Val K14237 tRNA-Val; tRNA Val
D LC40_0971 tRNA-Val K14237 tRNA-Val; tRNA Val
D LC40_0102 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0160 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0882 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0115 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0372 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D LC40_0103 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D LC40_0116 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D LC40_0163 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D LC40_0373 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D LC40_0879 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D LC40_0104 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0877 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0117 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0374 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0164 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0878 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0118 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0375 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0105 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D LC40_0165 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D LC40_0767 Aldo/keto reductase family protein K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D LC40_0273 Iron-dependent peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D LC40_1082 Thioredoxin reductase K21567 fnr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D LC40_0085 Possible cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D LC40_1100 Putative uncharacterized protein K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D LC40_0235 Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D LC40_0558 Thiamine biosynthesis protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D LC40_0806 Dak phosphatase K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D LC40_0265 Putative uncharacterized protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D LC40_1144 Protein-tyrosine phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D LC40_0068 Exopolysaccharide biosynthesis protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D LC40_0006 DHH family phosphoesterase K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59]
D LC40_0137 DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D LC40_0858 Carbohydrate kinase K17758 nnrD; ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136]
D LC40_1098 Putative uncharacterized protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D LC40_1099 Putative uncharacterized protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D LC40_0892 ATP-grasp protein K17810 asl; D-aspartate ligase [EC:6.3.1.12]
D LC40_0939 Possible cadmium-exporting ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
C 99983 Lipid metabolism
D LC40_0748 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
D LC40_0584 Putative uncharacterized protein K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
D LC40_0651 DNA-entry nuclease K15051 endA; DNA-entry nuclease
D LC40_1161 Membrane nuclease K15051 endA; DNA-entry nuclease
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
D LC40_0883 Integral membrane protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D LC40_0674 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D LC40_0975 CspA family cold shock transcriptional regulator K03704 cspA; cold shock protein
D LC40_0184 Putative uncharacterized protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D LC40_0425 Trigger factor (TF) K03545 tig; trigger factor
C 99976 Replication and repair
D LC40_0590 DNA processing protein K04096 smf; DNA processing protein
D LC40_0768 DNA replication protein DnaD K02086 dnaD; DNA replication protein
D LC40_0320 ATPase K07478 ycaJ; putative ATPase
D LC40_0600 Recombination ATPase K07478 ycaJ; putative ATPase
D LC40_0325 Phage primase K06919 K06919; putative DNA primase/helicase
D LC40_0169 DNA primase K06919 K06919; putative DNA primase/helicase
D LC40_0108 Transposase K07482 K07482; transposase, IS30 family
D LC40_0420 Transposase K07482 K07482; transposase, IS30 family
D LC40_0452 Transposase K07482 K07482; transposase, IS30 family
D LC40_0469 Transposase K07482 K07482; transposase, IS30 family
D LC40_0520 Transposase K07482 K07482; transposase, IS30 family
D LC40_0637 Transposase K07482 K07482; transposase, IS30 family
D LC40_0654 Transposase K07482 K07482; transposase, IS30 family
D LC40_0677 Transposase K07482 K07482; transposase, IS30 family
D LC40_0705 Transposase K07482 K07482; transposase, IS30 family
D LC40_0753 Transposase K07482 K07482; transposase, IS30 family
D LC40_0911 Transposase K07482 K07482; transposase, IS30 family
D LC40_0940 Transposase K07482 K07482; transposase, IS30 family
D LC40_0965 Transposase K07482 K07482; transposase, IS30 family
D LC40_0992 Transposase K07482 K07482; transposase, IS30 family
D LC40_0995 Transposase K07482 K07482; transposase, IS30 family
D LC40_0996 Transposase K07482 K07482; transposase, IS30 family
D LC40_1133 Transposase K07482 K07482; transposase, IS30 family
D LC40_0036 Transposase K07485 K07485; transposase
D LC40_0451 Transposase K07485 K07485; transposase
D LC40_0458 Transposase K07485 K07485; transposase
D LC40_0603 Transposase K07485 K07485; transposase
D LC40_0557 Transposase K07485 K07485; transposase
D LC40_0792 Transposase K07485 K07485; transposase
D LC40_1095 Transposase K07485 K07485; transposase
D LC40_1157 Transposase K07485 K07485; transposase
D LC40_0065 Transposase K07493 K07493; putative transposase
D LC40_0079 Transposase K07493 K07493; putative transposase
D LC40_0277 Transposase K07493 K07493; putative transposase
D LC40_0447 Transposase K07493 K07493; putative transposase
D LC40_0453 Transposase K07493 K07493; putative transposase
D LC40_0454 Transposase K07493 K07493; putative transposase
D LC40_0455 Transposase K07493 K07493; putative transposase
D LC40_0463 Transposase K07493 K07493; putative transposase
D LC40_0465 Transposase K07493 K07493; putative transposase
D LC40_0751 Transposase K07493 K07493; putative transposase
D LC40_0676 Transposase K07493 K07493; putative transposase
D LC40_0776 Transposase K07493 K07493; putative transposase
D LC40_0789 Transposase K07493 K07493; putative transposase
D LC40_0759 Transposase K07493 K07493; putative transposase
D LC40_0913 Transposase K07493 K07493; putative transposase
D LC40_0941 Transposase K07493 K07493; putative transposase
D LC40_0935 Transposase K07493 K07493; putative transposase
D LC40_0937 Transposase K07493 K07493; putative transposase
D LC40_0990 Transposase K07493 K07493; putative transposase
D LC40_0991 Transposase K07493 K07493; putative transposase
D LC40_1041 Transposase K07493 K07493; putative transposase
D LC40_1102 Transposase K07493 K07493; putative transposase
D LC40_1127 Transposase K07493 K07493; putative transposase
D LC40_1130 Transposase K07493 K07493; putative transposase
D LC40_1132 Transposase K07493 K07493; putative transposase
D LC40_1135 Transposase K07493 K07493; putative transposase
D LC40_1137 Transposase K07493 K07493; putative transposase
D LC40_1025 Transposase K07496 K07496; putative transposase
D LC40_1034 Transposase K07496 K07496; putative transposase
D LC40_0176 Transposase K07496 K07496; putative transposase
D LC40_0340 Transposase K07496 K07496; putative transposase
D LC40_0439 Transposase K07496 K07496; putative transposase
D LC40_0522 Transposase K07496 K07496; putative transposase
D LC40_0043 Transposase K07496 K07496; putative transposase
D LC40_0056 Transposase K07496 K07496; putative transposase
D LC40_0098 Transposase K07496 K07496; putative transposase
D LC40_0128 Transposase K07496 K07496; putative transposase
D LC40_0278 Transposase K07497 K07497; putative transposase
D LC40_0288 Transposase K07497 K07497; putative transposase
D LC40_0470 Transposase K07497 K07497; putative transposase
D LC40_0679 Transposase K07497 K07497; putative transposase
D LC40_0784 Transposase K07497 K07497; putative transposase
D LC40_0791 Putative transposase (Transposase) K07497 K07497; putative transposase
D LC40_0760 Putative transposase (Transposase) K07497 K07497; putative transposase
D LC40_0761 Putative uncharacterized protein K07497 K07497; putative transposase
D LC40_0912 Transposase K07497 K07497; putative transposase
D LC40_0914 Putative transposase (Transposase) K07497 K07497; putative transposase
D LC40_0934 Transposase K07497 K07497; putative transposase
D LC40_0938 Putative transposase (Transposase) K07497 K07497; putative transposase
D LC40_0993 Putative transposase K07497 K07497; putative transposase
D LC40_1138 Transposase K07497 K07497; putative transposase
D LC40_1093 Transposase K07497 K07497; putative transposase
D LC40_1096 Transposase K07497 K07497; putative transposase
D LC40_1139 Transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D LC40_0206 Putative uncharacterized protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D LC40_0504 Amino acid transport protein K03293 TC.AAT; amino acid transporter, AAT family
D LC40_0655 APC family amino acid-polyamine-organocation transporter K03293 TC.AAT; amino acid transporter, AAT family
D LC40_0260 Amino acid permease K03293 TC.AAT; amino acid transporter, AAT family
D LC40_0055 Amino acid transport protein K03293 TC.AAT; amino acid transporter, AAT family
D LC40_0793 Amino acid transport protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D LC40_1027 Amino acid transport protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D LC40_0196 Amino acid transport protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D LC40_1056 APC family amino acid-polyamine-organocation transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D LC40_0720 Dipeptide/tripeptide transport protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D LC40_0178 Dipeptide/tripeptide transport protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D LC40_0202 LIVCS family branched chain amino acid:cation symporter K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D LC40_0596 Cytosine transport protein K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
C 99978 Cell growth
D LC40_1168 Single-stranded nucleic acid binding R3H domain-containing protein K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D LC40_0415 GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D LC40_0551 Phosphate starvation-inducible protein PhoH K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D LC40_0341 Putative uncharacterized protein K02005 ABC.CD.TX; HlyD family secretion protein
C 99994 Others
B
B 09194 Poorly characterized
C 99996 General function prediction only
D LC40_0393 Competence protein K06198 coiA; competence protein CoiA
D LC40_0707 FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D LC40_0709 Iron-sulfur ABC superfamily ATP binding cassette transporter, membrane protein K09015 sufD; Fe-S cluster assembly protein SufD
D LC40_0918 Ribonuclease BN K07058 K07058; membrane protein
D LC40_1052 Membrane protein family protein K01421 yhgE; putative membrane protein
C 99997 Function unknown
D LC40_0146 Metal dependent phosphohydrolase K06885 K06885; uncharacterized protein
D LC40_1087 Putative uncharacterized protein K06889 K06889; uncharacterized protein
D LC40_0020 Cell surface hydrolase K06889 K06889; uncharacterized protein
D LC40_0933 Possible toxin regulator K07035 K07035; uncharacterized protein
D LC40_1063 Phosphoesterase K07097 K07097; uncharacterized protein
D LC40_0432 Short-chain dehydrogenase K07124 K07124; uncharacterized protein
D LC40_0321 Fructose permease K07149 K07149; uncharacterized protein
D LC40_0601 YdfK protein K07150 K07150; uncharacterized protein
D LC40_0550 GatB/Yqey domain-containing protein K09117 K09117; uncharacterized protein
D LC40_0703 Hemerythrin HHE cation binding domain protein K09155 K09155; uncharacterized protein
D LC40_0658 Putative uncharacterized protein K09384 K09384; uncharacterized protein
D LC40_0671 Conserved hypothetical protein K09384 K09384; uncharacterized protein
D LC40_0572 RNA-binding protein K00243 K00243; uncharacterized protein
D LC40_0747 Protein of hypothetical function DUF328 K09861 K09861; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 10, 2024