+F Repair protein KO #

  DNA Repair and Recombination Proteins - Leptospira interrogans serovar Copenhageni

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D LIC_11339 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LIC_13102 uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LIC_11614 mutY; A/G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LIC_11759 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E LIC_11791 recG; ATP-dependent DNA helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D LIC_11687 endonuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D LIC_12191 mutT; mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LIC_20067 MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LIC_12560 dut; deoxyuridine 5'triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LIC_13402 ada; methylated-DNA--protein-cysteine methyltransferase transcription regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D LIC_11339 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LIC_13102 uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LIC_10548 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E LIC_10238 3-methyladenine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E LIC_12362 alkA; 3-methyladenine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E LIC_11614 mutY; A/G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LIC_13064 tag; 3-methyl-adenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E LIC_11759 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LIC_11452 exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E LIC_11066 recJ; single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LIC_13282 lig; NAD dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LIC_10586 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LIC_11717 uvrA; nucleotide excision repair subunit A UVRABC K03701 uvrA; excinuclease ABC subunit A E LIC_12941 uvrB; nucleotide excision repair subunit B K03702 uvrB; excinuclease ABC subunit B E LIC_11756 uvrC; nucleotide excision repair subunit C K03703 uvrC; excinuclease ABC subunit C E LIC_11624 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LIC_11732 uvrD2; atp-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LIC_10420 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LIC_12588 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LIC_10586 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E LIC_13282 lig; NAD dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LIC_10753 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LIC_10754 rpoC; DNA-directed RNA polymerase beta' chain protein K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LIC_12846 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LIC_11455 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LIC_11774 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E LIC_12514 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LIC_11591 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LIC_11590 exodeoxyribonuclease small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LIC_10222 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LIC_10002 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LIC_10014 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LIC_13474 dnaX; DNA polymerase III gamma subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E LIC_13497 DNA polymerase III subunit-related protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LIC_13282 lig; NAD dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LIC_11624 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LIC_11732 uvrD2; atp-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LIC_10420 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LIC_12588 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LIC_10564 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E LIC_12112 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LIC_12686 recB; exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E LIC_12688 recC; exodeoxyribonuclease v gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E LIC_12685 recD; exodeoxyribonuclease v alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LIC_11745 recA; recombinase A K03553 recA; recombination protein RecA E LIC_11148 ruvA; DNA helicase subunit A K03550 ruvA; holliday junction DNA helicase RuvA E LIC_12811 ruvB; holliday junction DNA helicase protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LIC_12885 ruvC; putative holliday junction endodeoxyribonuclease protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E LIC_11551 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E LIC_11745 recA; recombinase A K03553 recA; recombination protein RecA E LIC_11142 radA; RadA K04485 radA; DNA repair protein RadA/Sms E LIC_10003 recF; DNA repair and genetic recombination protein K03629 recF; DNA replication and repair protein RecF E LIC_13150 ATP-dependent DNA helicase protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LIC_11066 recJ; single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LIC_12104 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O) E LIC_13476 recR; RecR K06187 recR; recombination protein RecR E LIC_11620 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E LIC_11148 ruvA; DNA helicase subunit A K03550 ruvA; holliday junction DNA helicase RuvA E LIC_12811 ruvB; holliday junction DNA helicase protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LIC_12885 ruvC; putative holliday junction endodeoxyribonuclease protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E LIC_10942 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E LIC_12677 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LIC_10006 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LIC_13347 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LIC_10005 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LIC_13348 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LIC_12080 topA; DNA topoisomerase I protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LIC_11066 recJ; single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LIC_12104 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O) F LIC_13476 recR; RecR K06187 recR; recombination protein RecR F LIC_13282 lig; NAD dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F LIC_12961 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LIC_12689 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LIC_11717 uvrA; nucleotide excision repair subunit A UVRABC K03701 uvrA; excinuclease ABC subunit A F LIC_12941 uvrB; nucleotide excision repair subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LIC_13052 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D LIC_11745 recA; recombinase A K03553 recA; recombination protein RecA D LIC_12305 lexA; transcriptional repressor (LexA family) K01356 lexA; repressor LexA [EC:3.4.21.88] D LIC_12654 transcriptional repressor (LexA family) K01356 lexA; repressor LexA [EC:3.4.21.88] D LIC_11620 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D LIC_10564 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LIC_12112 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D LIC_12019 yoaA; ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D LIC_12191 mutT; mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LIC_20067 MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LIC_12560 dut; deoxyuridine 5'triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LIC_11587 nrdA; ribonucleotide reductase protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024