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Transcription Machinery - Listeria ivanovii subsp. ivanovii PAM 55
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E LIV_0126 Putative ATP dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E LIV_2517 rpoA; Putative RNA polymerase (alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E LIV_0237 rpoB; Putative RNA polymerase (beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E LIV_0238 rpoC; Putative RNA polymerase (beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E LIV_2473 Putative RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
E LIV_1802 Hypothetical protein of unknown function K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E LIV_1411 rpoD; Putative RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E LIV_0323 Putative RNA polymerase ECF-type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E LIV_0837 sigB; Putative RNA polymerase sigma-37 factor (sigma-B) K03090 sigB; RNA polymerase sigma-B factor
E LIV_0220 sigH; Putative RNA polymerase sigma-30 factor (sigma-H) K27000 sigH; RNA polymerase sigma-H factor
E LIV_2366 sigL; Putative RNA polymerase sigma-54 factor (sigma-L) K03092 rpoN; RNA polymerase sigma-54 factor
C Other transcription-related factors
D RNA polymerase-associated proteins
E LIV_1273 nusA; Putative N utilization substance protein A (NusA protein) K02600 nusA; transcription termination/antitermination protein NusA
E LIV_1310 Putative transcription termination protein (NusB) K03625 nusB; transcription antitermination protein NusB
E LIV_0223 nusG; Putative transcription antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
E LIV_0833 rsbT; Putative positive regulation of sigma-B activity K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
E LIV_0832 rsbS; Putative negative regulation of sigma-B activity K17762 rsbS; rsbT antagonist protein RsbS
E LIV_0136 Hypothetical protein of unknown function K17763 rsbR; rsbT co-antagonist protein RsbR
E LIV_0831 RsbR; Putative positive regulator of sigma-B activity K17763 rsbR; rsbT co-antagonist protein RsbR
E LIV_0834 rsbU; Putative serine phosphatase RsbU K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E LIV_0838 rsbX; Putative Indirect negative regulation of sigma B dependant gene expression (serine phosphatase) K05518 rsbX; phosphoserine phosphatase RsbX [EC:3.1.3.3]
E LIV_0835 rsbV; Putative anti-anti-sigma factor (antagonist of RsbW) K04749 rsbV; anti-sigma B factor antagonist
E LIV_0836 rsbW; Putative sigma-B activity negative regulator RsbW K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Transcription elongation factors
E LIV_1452 Putative transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Transcription termination factor
E LIV_2465 rho; Putative transcription terminator factor rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024