+E Ribosome biogenesis KO
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Ribosome Biogenesis - Listeria monocytogenes Lm60 (serotype 1/2a)
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D IJ09_00810 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C IJ09_02695 era; GTPase Era K03595 era; GTPase
C IJ09_02310 GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C IJ09_03400 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C IJ09_03215 antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C IJ09_09055 antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D IJ09_13190 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D IJ09_09425 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D IJ09_00720 16S rRNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D IJ09_09020 16S rRNA methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D IJ09_14945 DNA methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D IJ09_02655 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D IJ09_10695 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D IJ09_15005 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D IJ09_09525 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D IJ09_03180 RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D IJ09_00470 rRNA (guanine-N1)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D IJ09_09080 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D IJ09_08790 ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D IJ09_07445 50S rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D IJ09_07965 RNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D IJ09_03180 RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D IJ09_01100 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D IJ09_00085 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D IJ09_13690 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D IJ09_00615 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D IJ09_05450 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C IJ09_14830 alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C IJ09_01365 alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C IJ09_00870 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C IJ09_02650 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C IJ09_00810 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C IJ09_02280 ribonuclease E K08301 rng; ribonuclease G [EC:3.1.26.-]
C IJ09_02485 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C IJ09_09085 ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C IJ09_06000 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C IJ09_03795 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C IJ09_02755 DEAD/DEAH box helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C IJ09_02695 era; GTPase Era K03595 era; GTPase
C IJ09_00735 GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C IJ09_03350 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C IJ09_00145 engA; GTP-binding protein Der K03977 engA; GTPase
C IJ09_02310 GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C IJ09_03650 GTPase K14540 rbgA; ribosome biogenesis GTPase A
C IJ09_06515 GTP-binding protein K03665 hflX; GTPase
C IJ09_03530 GTPase K03665 hflX; GTPase
C IJ09_02550 GTPase K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C IJ09_12095 tRNA threonylcarbamoyladenosine biosynthesis protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C IJ09_02380 (p)ppGpp synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C IJ09_03375 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C IJ09_03405 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C IJ09_10390 RNA-binding protein K14761 rlbA; ribosome-associated protein
C IJ09_02575 ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
C IJ09_02680 rRNA maturation factor K07042 ybeY; probable rRNA maturation factor
C IJ09_02560 RNA-binding protein K07574 yhbY; RNA-binding protein
C IJ09_12250 sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C IJ09_10810 GTP-binding protein K06942 ychF; ribosome-binding ATPase
C IJ09_14970 DNA-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024