+E Transcription factors KO
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Transcription Factors - Mycobacterium avium subsp. paratuberculosis MAP4
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D MAP4_1380 ada regulatory protein alkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D MAP4_2249 Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D MAP4_1381 putative transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D MAP4_2469 transcriptional regulator, LysR family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
C DeoR family
C LacI family
C GntR family
D MAP4_1572 Transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D MAP4_3238 Transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D MAP4_2748 Transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D MAP4_0271 Transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D MAP4_1476 Transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D MAP4_4206 Transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D MAP4_1641 Transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D MAP4_2110 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D MAP4_2208 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D MAP4_0212 Transcriptional regulator, TetR family K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D MAP4_2293 Transcriptional regulator, TetR family K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D MAP4_3695 Transcriptional repressor EthR, TetR family K21961 ethR; TetR/AcrR family transcriptional regulator, ethionamide resistance regulator
D MAP4_1562 Transcriptional regulator, TetR family K21961 ethR; TetR/AcrR family transcriptional regulator, ethionamide resistance regulator
D MAP4_2653 Transcriptional regulator, TetR family K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D MAP4_3376 TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MAP4_2363 TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MAP4_3358 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MAP4_0573 TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D MAP4_4276 Transcriptional regulator, TetR family K24699 mftR; TetR/AcrR family transcriptional regulator, regulator of mycofactocin system
C Lrp/AsnC family
D MAP4_0370 transcriptional regulator, asnC-family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
C MerR family
D MAP4_2592 Transcriptional regulator, MerR family K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D MAP4_3956 merR-family heat shock protein transcriptional repressor HspR K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D MAP4_2136 merR-family heat shock protein transcriptional repressor hspR K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D MAP4_0518 merR-family heat shock protein transcriptional repressor K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
C Fur family
D MAP4_1683 ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D MAP4_3883 ferric uptake regulator, Fur family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D MAP4_2167 ferric uptake regulation protein furA (fur) K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
C IclR family
C CRP/FNR family
D MAP4_3471 transcriptional regulator, crpfnr-family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D MAP4_3793 transcriptional regulator, crpfnr-family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
C ArsR family
D MAP4_1684 ArsR family transcriptional regulator K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D MAP4_3573 putative transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D MAP4_4075 Transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D MAP4_0952 transcriptional regulatory protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
C Other families
D MAP4_0985 iron-dependent repressor and activator IdeR K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D MAP4_2280 Transcriptional regulator, MecI family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D MAP4_0385 bifunctional biotin biosynthesis protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D MAP4_3688 hypothetical protein K27097 espR; ESX-1-secreted protein regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D MAP4_0410 transcriptional regulator whib-like WhiB2 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MAP4_3477 transcriptional regulator whib-like whiB4 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MAP4_4398 transcriptional regulator whib-like WhiB3 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MAP4_0465 transcriptional regulator WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MAP4_3843 transcriptional regulatory protein WHIB-like WhiB5 K18956 whiB5; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MAP4_0489 transcriptional regulator whib-like WhiB7 K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MAP4_0023 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D MAP4_0142 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D MAP4_3641 transcriptional regulatory protein EmbR K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D MAP4_1319 transcriptional regulatory protein EMBR K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D MAP4_4469 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MAP4_3392 transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D MAP4_2479 arginine repressor ArgR K03402 argR; transcriptional regulator of arginine metabolism
D MAP4_1659 heat shock protein transcriptional repressorhrcA K03705 hrcA; heat-inducible transcriptional repressor
D MAP4_4260 conserved hypothetical protein, PaaX-like protein family K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D MAP4_2739 pyrimidine operon regulatory protein pyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D MAP4_3830 hypothetical protein K07735 algH; putative transcriptional regulator
D MAP4_0977 transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D MAP4_1922 putative cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0