+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Drepanopeziza brunnea</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        MBM_05178 mRNA capping enzyme	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        MBM_08138 cell division control protein 2	K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22] 
E        MBM_07814 serine/threonine-protein kinase	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        MBM_04493 mRNA capping enzyme	K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50] 
D      Cap binding complex
E        MBM_03206 cap binding protein	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        MBM_04453 nuclear cap binding protein subunit 2	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        MBM_00396 putative cleavage and polyadenylation specificity factor subunit 5	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        MBM_03259 pre-mRNA cleavage complex II protein Clp1	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        MBM_02295 mRNA cleavage factor complex component Pcf11	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        MBM_04001 CPSF A subunit region	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        MBM_03057 RNA-metabolising metallo-beta-lactamase	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        MBM_01770 metallo-beta-lactamase superfamily protein	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        MBM_03961 Zinc finger CCCH type domain containing protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        MBM_03245 Fip1 domain-containing protein	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        MBM_07917 DWNN domain-containing protein	K15541 MPE1; protein MPE1 
E        MBM_00350 protein PFS2	K15542 PFS2; polyadenylation factor subunit 2 
E        MBM_01123 WD domain-containing protein	K14962 WDR82; COMPASS component SWD2 
E        MBM_09437 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        MBM_09269 calcineurin-like phosphoesterase	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        MBM_03371 protein SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        MBM_01339 RNA recognition motif containing protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        MBM_09389 CFIA complex component Rna14	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        MBM_09164 mRNA cleavage and polyadenylation specificity factor complex subunit	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        MBM_02544 small nuclear ribonucleoprotein	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        MBM_01137 LSM domain-containing protein	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        MBM_01700 LSM domain-containing protein	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        MBM_07409 LSM domain-containing protein	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        MBM_03429 LSM domain-containing protein	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        MBM_03057 RNA-metabolising metallo-beta-lactamase	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        MBM_01770 metallo-beta-lactamase superfamily protein	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        MBM_01339 RNA recognition motif containing protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        MBM_09164 mRNA cleavage and polyadenylation specificity factor complex subunit	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        MBM_07057 transcriptional elongation protein	K15171 SUPT4H1; transcription elongation factor SPT4 
E        MBM_08721 transcription initiation protein spt5	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        MBM_00697 DUF890 domain protein	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        MBM_04227 hypothetical protein	K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 
D      Poly(A) addition factors
E        MBM_00240 Poly(A) polymerase	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
E        MBM_01669 RNA recognition domain-containing protein	K13192 RBM26; RNA-binding protein 26 
C    Other processing factors
D      MBM_07058 zinc finger protein RTS2	K13102 KIN; DNA/RNA-binding protein KIN17 
D      MBM_01470 arsenite resistance protein Ars2	K27103 SRRT; serrate RNA effector molecule 
D      MBM_09280 nuclear polyadenylated RNA-binding protein Nab2	K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        MBM_03487 RNA-binding protein 8A	K12876 RBM8A; RNA-binding protein 8A 
E        MBM_05747 Mago nashi domain protein	K12877 MAGOH; protein mago nashi 
E        MBM_09545 protein mlo3-like protein	K12881 THOC4; THO complex subunit 4 
E        MBM_04801 RNA binding protein	K12881 THOC4; THO complex subunit 4 
E        MBM_07342 DEAD/DEAH box helicase	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        MBM_02718 eukaryotic initiation factor 4A-12	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        MBM_06030 hypothetical protein	K25178 CCDC174; coiled-coil domain-containing protein 174 
E        MBM_08849 Sin3-associated polypeptide Sap18	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        MBM_07605 RNA recognition domain-containing protein	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
E        MBM_04815 PWI domain mRNA processing protein	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        MBM_03643 guanylate kinase	K12878 THOC1; THO complex subunit 1 
E        MBM_00536 THO complex subunit 2	K12879 THOC2; THO complex subunit 2 
E        MBM_09781 WD domain-containing protein	K12880 THOC3; THO complex subunit 3 
E        MBM_09545 protein mlo3-like protein	K12881 THOC4; THO complex subunit 4 
E        MBM_04801 RNA binding protein	K12881 THOC4; THO complex subunit 4 
E        MBM_06145 putative THO complex subunit 5	K13174 THOC5; THO complex subunit 5 
D      TREX-2 complex
E        MBM_02862 PCI domain-containing protein	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        MBM_01062 caltractin	K16466 CETN3; centrin-3 
E        MBM_03660 leucine permease transcriptional regulator	K23719 SAC3; nuclear mRNA export protein SAC3 
D      Nuclear pore complex
E        MBM_01092 TPR/MLP1/MLP2-like protein	K09291 TPR; nucleoprotein TPR 
E        MBM_05050 Poly(A)+ RNA export protein	K14298 RAE1; mRNA export factor 
E        MBM_09790 protein transport protein SEC13	K14004 SEC13; protein transport protein SEC13 
E        MBM_07597 hypothetical protein	K14308 NUP54; nuclear pore complex protein Nup54 
E        MBM_02598 hypothetical protein	K14306 NUP62; nuclear pore complex protein Nup62 
E        MBM_04370 nucleoporin-interacting protein NIC96	K14309 NUP93; nuclear pore complex protein Nup93 
E        MBM_01063 nucleoporin SONB	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        MBM_08599 hypothetical protein	K14301 NUP107; nuclear pore complex protein Nup107 
E        MBM_05032 hypothetical protein	K14300 NUP133; nuclear pore complex protein Nup133 
E        MBM_07690 hypothetical protein	K14311 NUP188; nuclear pore complex protein Nup188 
E        MBM_06634 hypothetical protein	K14312 NUP155; nuclear pore complex protein Nup155 
E        MBM_07034 nuclear pore complex subunit	K14310 NUP205; nuclear pore complex protein Nup205 
E        MBM_05076 nuclear envelope protein	K14315 NDC1; nucleoporin NDC1 
E        MBM_01740 WD domain-containing protein	K14299 SEH1; nucleoporin SEH1 
E        MBM_04904 hypothetical protein	K18715 NUP159; nucleoporin NUP159 
E        MBM_07453 CCCH zinc finger domain protein	K18716 NUP42; nucleoporin NUP42 
E        MBM_04452 nuclear pore complex protein An-Nup82	K18719 NUP82; nucleoporin NUP82 
E        MBM_01062 caltractin	K16466 CETN3; centrin-3 
E        MBM_03702 GLE1-like protein	K18723 GLE1; nucleoporin GLE1 
E        MBM_02565 mRNA export factor mex67	K14284 NXF; nuclear RNA export factor 
E        MBM_07821 Nuclear transport factor 2 domain containing protein	K14285 NXT1_2; NTF2-related export protein 1/2 
E        MBM_06918 nuclear pore complex component	K18724 POM34; nucleoporin POM34 
E        MBM_06877 hypothetical protein	K18725 POM152; nucleoporin POM152 
D      Ran-mediated transport factors
E        MBM_07222 UBX domain protein	K18726 FAF2; FAS-associated factor 2 
E        MBM_01155 cell division control protein Cdc48	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        MBM_00465 exportin	K14290 XPO1; exportin-1 
E        MBM_02286 ran GTPase activating protein 1	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        MBM_09234 translation Initiation Factor Eif4e	K03259 EIF4E; translation initiation factor 4E 
E        MBM_08450 eukaryotic translation initiation factor 4E-4	K03259 EIF4E; translation initiation factor 4E 
E        MBM_04809 eukaryotic initiation factor 4A	K03257 EIF4A; translation initiation factor 4A 
E        MBM_03647 eukaryotic translation initiation factor subunit	K03260 EIF4G; translation initiation factor 4G 
E        MBM_01930 translation initiation factor eIF4B	K03258 EIF4B; translation initiation factor 4B 
E        MBM_05426 ATP-dependent RNA helicase DED1	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        MBM_00640 DEAD/DEAH box helicase	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        MBM_00766 GYF domain protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        MBM_01177 4 family polyadenylate binding protein	K13126 PABPC; polyadenylate-binding protein 
E        MBM_07577 DSHCT domain-containing protein	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        MBM_04920 Sec63 Brl domain-containing protein	K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6] 
E        MBM_08663 translation machinery-associated protein 20	K07575 MCTS; malignant T-cell-amplified sequence 
E        MBM_00076 RNA-binding protein	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        MBM_01291 RNA binding protein	K14294 WIBG; partner of Y14 and mago 
E        MBM_07889 hypothetical protein	K14411 MSI; RNA-binding protein Musashi 
E        MBM_05152 elongation factor Tu GTP binding domain-containing protein	K14416 HBS1; elongation factor 1 alpha-like protein 
E        MBM_06426 eRF1 domain 1	K06965 PELO; protein pelota 
E        MBM_07952 polyadenylate-binding protein 2	K14396 PABPN1; polyadenylate-binding protein 2 
E        MBM_06509 DEAD/DEAH box helicase	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        MBM_04290 pre-mRNA-splicing factor SYF1	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        MBM_01546 SAP domain-containing protein	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        MBM_06067 GDP/GTP exchange factor	K11493 RCC1; regulator of chromosome condensation 
E        MBM_02066 GANP/Nin1/mts3/eIF-3 p25 family protein	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        MBM_07086 eukaryotic peptide chain release factor subunit 1	K03265 ETF1; peptide chain release factor subunit 1 
E        MBM_06446 eukaryotic peptide chain release factor GTP-binding subunit	K03267 ERF3; peptide chain release factor subunit 3 
E        MBM_04678 RNA helicase	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        MBM_01743 MIF4G domain-containing protein	K14327 UPF2; regulator of nonsense transcripts 2 
E        MBM_05200 nonsense-mediated mRNA decay protein	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        MBM_01984 serine/threonine-protein phosphatase pp2a catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        MBM_02149 protein phosphatase PP2A regulatory subunit A	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        MBM_04348 protein phosphatase 2A regulatory B subunit	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        MBM_02116 protein phosphatase 2A regulatory B subunit	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        MBM_00766 GYF domain protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        MBM_01031 elongation factor Tu GTP binding domain-containing protein	K24887 GTPBP1; GTP-binding protein 1 
C    Factors involved in mRNA localization
D      Cargo complex
E        MBM_05831 pumilio domain-containing protein	K14844 PUF6; pumilio homology domain family member 6 
E        MBM_02378 KH domain RNA-binding protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        MBM_02502 KH domain RNA binding protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        MBM_08256 myosin-2	K10357 MYO5; myosin V 
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        MBM_09016 KH domain-containing protein	K13210 FUBP; far upstream element-binding protein 
E        MBM_07351 putative translation elongation factor 1 alpha	K03231 EEF1A; elongation factor 1-alpha 
E        MBM_08249 40S ribosomal protein S3aE	K03233 EEF1G; elongation factor 1-gamma 
D      Other mRNA localization factors
E        MBM_03703 RNB domain-containing protein	K18748 SSD1; protein SSD1 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        MBM_06945 exonuclease II Exo2	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        MBM_09390 piwi domain-containing protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        MBM_01169 QDE2 protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        MBM_06580 QDE2 protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        MBM_09234 translation Initiation Factor Eif4e	K03259 EIF4E; translation initiation factor 4E 
E        MBM_08450 eukaryotic translation initiation factor 4E-4	K03259 EIF4E; translation initiation factor 4E 
E        MBM_04678 RNA helicase	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        MBM_05426 ATP-dependent RNA helicase DED1	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        MBM_00640 DEAD/DEAH box helicase	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        MBM_06833 DEAD/DEAH box helicase	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        MBM_05611 G2/M phase checkpoint control protein Sum2	K18749 LSM14; protein LSM14 
E        MBM_00234 transportin-1	K18752 TNPO1; transportin-1 
E        MBM_00355 catalytic subunit of the PKA	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        MBM_07529 cAMP-dependent protein kinase A	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        MBM_05928 La domain family	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        MBM_01128 decapping enzyme Dcp2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        MBM_09090 LSM domain-containing protein	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        MBM_02326 small nuclear ribonucleoprotein LSM2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        MBM_01032 U6 snRNP-associated protein Lsm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        MBM_07791 LSM domain-containing protein	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        MBM_06226 putative U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        MBM_07225 LSM domain-containing protein	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        MBM_08256 myosin-2	K10357 MYO5; myosin V 
E        MBM_04367 alpha-tubulin	K07374 TUBA; tubulin alpha 
E        MBM_01468 tubulin alpha chain	K07374 TUBA; tubulin alpha 
E        MBM_09663 CCR4-Not complex component	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        MBM_06666 NOT2/NOT3/NOT5 family protein	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        MBM_07904 CCR4-NOT transcription complex	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        MBM_07389 RNA recognition domain-containing protein	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        MBM_00208 putative Glucose-repressible alcohol dehydrogenase transcriptional effector	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        MBM_08786 CAF1 family ribonuclease	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        MBM_06439 putative PAB-dependent poly(A)-specific ribonuclease subunit PAN2	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        MBM_07223 PAB-dependent poly(A)-specific ribonuclease subunit PAN3	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        MBM_03328 topoisomerase II-associated protein PAT1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        MBM_07018 DFDF domain-containing protein	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        MBM_01743 MIF4G domain-containing protein	K14327 UPF2; regulator of nonsense transcripts 2 
E        MBM_05200 nonsense-mediated mRNA decay protein	K14328 UPF3; regulator of nonsense transcripts 3 
E        MBM_02331 RNA polymerase Rpb7-like domain-containing protein	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
D      Stress granule specific factors
E        MBM_07016 RNA recognition domain-containing protein	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        MBM_01177 4 family polyadenylate binding protein	K13126 PABPC; polyadenylate-binding protein 
E        MBM_01553 NTF2 and RRM domain-containing protein	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        MBM_09404 eukaryotic translation initiation factor 2A	K15026 EIF2A; translation initiation factor 2A 
E        MBM_08305 eukaryotic translation initiation factor 3	K03253 EIF3B; translation initiation factor 3 subunit B 
E        MBM_04809 eukaryotic initiation factor 4A	K03257 EIF4A; translation initiation factor 4A 
E        MBM_02718 eukaryotic initiation factor 4A-12	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        MBM_01930 translation initiation factor eIF4B	K03258 EIF4B; translation initiation factor 4B 
E        MBM_03647 eukaryotic translation initiation factor subunit	K03260 EIF4G; translation initiation factor 4G 
E        MBM_04699 putative Guanine nucleotide-binding protein subunit beta-like protein	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        MBM_02565 mRNA export factor mex67	K14284 NXF; nuclear RNA export factor 
E        MBM_05498 hypothetical protein	K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        MBM_01128 decapping enzyme Dcp2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        MBM_06833 DEAD/DEAH box helicase	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        MBM_07018 DFDF domain-containing protein	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        MBM_03328 topoisomerase II-associated protein PAT1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        MBM_09090 LSM domain-containing protein	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        MBM_02326 small nuclear ribonucleoprotein LSM2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        MBM_01032 U6 snRNP-associated protein Lsm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        MBM_07791 LSM domain-containing protein	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        MBM_06226 putative U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        MBM_07225 LSM domain-containing protein	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
D      5' exonucleases
E        MBM_06945 exonuclease II Exo2	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        MBM_07364 5'->3' exoribonculease Dhp1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
C    3'-5' decay
D      Core exosome factors
E        MBM_02794 exosomal core protein CSL4	K07573 CSL4; exosome complex component CSL4 
E        MBM_00876 exosome complex exonuclease RRP4	K03679 RRP4; exosome complex component RRP4 
E        MBM_09860 exosome complex exonuclease RRP40	K03681 RRP40; exosome complex component RRP40 
E        MBM_03832 3' exoribonuclease family protein	K11600 RRP41; exosome complex component RRP41 
E        MBM_06170 exosome complex subunit Rrp46	K12590 RRP46; exosome complex component RRP46 
E        MBM_04285 3' exoribonuclease family protein	K12587 MTR3; exosome complex component MTR3 
E        MBM_09093 3' exoribonuclease family protein	K12589 RRP42; exosome complex component RRP42 
E        MBM_06473 3' exoribonuclease family protein	K12586 RRP43; exosome complex component RRP43 
E        MBM_00352 exosome complex exonuclease	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        MBM_05763 RNB domain-containing protein	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        MBM_06848 putative exosome complex exonuclease Rrp6	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        MBM_06285 hypothetical protein	K12592 C1D; exosome complex protein LRP1 
E        MBM_02181 DEAD/DEAH box helicase	K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7] 
D      TRAMP complex
E        MBM_06042 topoisomerase family protein	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        MBM_04593 zinc knuckle protein	K12597 AIR1_2; protein AIR1/2 
E        MBM_08039 ATP-dependent RNA helicase DOB1	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        MBM_07577 DSHCT domain-containing protein	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        MBM_03019 tetratricopeptide	K12600 SKI3; superkiller protein 3 
E        MBM_04954 WD domain-containing protein	K12601 SKI8; superkiller protein 8 
D      Ccr4-NOT complex
E        MBM_00208 putative Glucose-repressible alcohol dehydrogenase transcriptional effector	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        MBM_09663 CCR4-Not complex component	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        MBM_06666 NOT2/NOT3/NOT5 family protein	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        MBM_07904 CCR4-NOT transcription complex	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        MBM_07389 RNA recognition domain-containing protein	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        MBM_08786 CAF1 family ribonuclease	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        MBM_05989 cell differentiation family protein	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        MBM_08274 putative ABC transporter	K12608 CAF16; CCR4-NOT complex subunit CAF16 
E        MBM_06232 PH domain protein	K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120 
D      Pan complex
E        MBM_06439 putative PAB-dependent poly(A)-specific ribonuclease subunit PAN2	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        MBM_07223 PAB-dependent poly(A)-specific ribonuclease subunit PAN3	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        MBM_03354 CAF1 family ribonuclease	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        MBM_01218 hypothetical protein	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        MBM_08808 SAM domain-containing protein	K27407 VTS1; RNA-binding protein VTS1 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        MBM_03933 hypothetical protein	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        MBM_05607 RNase3 domain-containing protein	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        MBM_08592 phosphoglucomutase	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        MBM_06236 enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        MBM_07527 6-phosphofructokinase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        MBM_06587 hsp70-like protein	K04043 dnaK; molecular chaperone DnaK 
E        MBM_05627 heat shock protein 60	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        MBM_00876 exosome complex exonuclease RRP4	K03679 RRP4; exosome complex component RRP4 
E        MBM_02794 exosomal core protein CSL4	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        MBM_03832 3' exoribonuclease family protein	K11600 RRP41; exosome complex component RRP41 
E        MBM_09093 3' exoribonuclease family protein	K12589 RRP42; exosome complex component RRP42 
D      Others
!
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#Last updated: April 25, 2024