+E Messenger RNA Biogenesis KO
#
Messenger RNA Biogenesis - Mus musculus (house mouse)
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 67897 Rnmt; RNA (guanine-7-) methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 24018 Rngtt; RNA guanylyltransferase and 5'-phosphatase K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 12572 Cdk7; cyclin dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 74157 Cmtr1; cap methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 234728 Cmtr2; cap methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 100038538 Ramacl; RNA guanine-7 methyltransferase activating subunit like K18708 FAM103A1; RNMT-activating mini protein
E 67148 Ramac; RNA guanine-7 methyltransferase activating subunit K18708 FAM103A1; RNMT-activating mini protein
E 100043059 Gm4199; predicted gene 4199 K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 433702 Ncbp1; nuclear cap binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 68092 Ncbp2; nuclear cap binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 68219 Nudt21; nudix hydrolase 21 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 432508 Cpsf6; cleavage and polyadenylation specific factor 6 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 269061 Cpsf7; cleavage and polyadenylation specific factor 7 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 98985 Clp1; CLP1, cleavage and polyadenylation factor I subunit K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 74737 Pcf11; PCF11 cleavage and polyadenylation factor subunit K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 94230 Cpsf1; cleavage and polyadenylation specific factor 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 51786 Cpsf2; cleavage and polyadenylation specific factor 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 54451 Cpsf3; cleavage and polyadenylation specificity factor 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 54188 Cpsf4; cleavage and polyadenylation specific factor 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 66899 Fip1l1; factor interacting with PAPOLA and CPSF1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 74320 Wdr33; WD repeat domain 33 K15542 PFS2; polyadenylation factor subunit 2
E 77305 Wdr82; WD repeat domain containing 82 K14962 WDR82; COMPASS component SWD2
E 19045 Ppp1ca; protein phosphatase 1 catalytic subunit alpha K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 19046 Ppp1cb; protein phosphatase 1 catalytic subunit beta K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 19047 Ppp1cc; protein phosphatase 1 catalytic subunit gamma K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 434233 Ppp1ccb; protein phosphatase 1 catalytic subunit gamma B K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 68991 Ssu72; Ssu72 RNA polymerase II CTD phosphatase homolog (yeast) K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 67337 Cstf1; cleavage stimulation factor, 3' pre-RNA, subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 108062 Cstf2; cleavage stimulation factor, 3' pre-RNA subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 83410 Cstf2t; cleavage stimulation factor, 3' pre-RNA subunit 2, tau K14407 CSTF2; cleavage stimulation factor subunit 2
E 228410 Cstf3; cleavage stimulation factor, 3' pre-RNA, subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 68188 Sympk; symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 20638 Snrpb; small nuclear ribonucleoprotein B K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 67332 Snrpd3; small nuclear ribonucleoprotein D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 20643 Snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 69878 Snrpf; small nuclear ribonucleoprotein polypeptide F K11098 SNRPF; small nuclear ribonucleoprotein F
E 68011 Snrpg; small nuclear ribonucleoprotein polypeptide G K11099 SNRPG; small nuclear ribonucleoprotein G
E 116748 Lsm10; U7 snRNP-specific Sm-like protein LSM10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 72290 Lsm11; U7 snRNP-specific Sm-like protein LSM11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 51786 Cpsf2; cleavage and polyadenylation specific factor 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 54451 Cpsf3; cleavage and polyadenylation specificity factor 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 108062 Cstf2; cleavage stimulation factor, 3' pre-RNA subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 83410 Cstf2t; cleavage stimulation factor, 3' pre-RNA subunit 2, tau K14407 CSTF2; cleavage stimulation factor subunit 2
E 68188 Sympk; symplekin K06100 SYMPK; symplekin
E 20492 Slbp; stem-loop binding protein K18710 SLBP; histone RNA hairpin-binding protein
E 666976 Gm8396; predicted gene 8396 K18710 SLBP; histone RNA hairpin-binding protein
E 26885 Casp8ap2; caspase 8 associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 20922 Supt4a; SPT4A, DSIF elongation factor subunit K15171 SUPT4H1; transcription elongation factor SPT4
E 100041294 Supt4b; SPT4B, DSIF elongation factor subunit K15171 SUPT4H1; transcription elongation factor SPT4
E 20924 Supt5; suppressor of Ty 5, DSIF elongation factor subunit K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 56335 Mettl3; methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 210529 Mettl14; methyltransferase 14, N6-adenosine-methyltransferase subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 76781 Mettl4; methyltransferase 4, N6-adenosine K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 67493 Mettl16; methyltransferase 16, N6-methyladenosine K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 60532 Wtap; WT1 associating protein K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 66185 Virma; vir like m6A methyltransferase associated K22910 VIRMA; protein virilizer
E 109095 Rbm15b; RNA binding motif protein 15B K13190 RBM15; RNA-binding protein 15
E 229700 Rbm15; RNA binding motif protein 15 K13190 RBM15; RNA-binding protein 15
E 67302 Zc3h13; zinc finger CCCH type containing 13 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 104836 Cbll1; Casitas B-lineage lymphoma-like 1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 216578 Papolg; poly(A) polymerase gamma K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 18789 Papola; poly (A) polymerase alpha K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 56522 Papolb; poly (A) polymerase beta (testis specific) K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 100715 Tent2; terminal nucleotidyltransferase 2 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 70044 Tut1; terminal uridylyl transferase 1, U6 snRNA-specific K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 12021 Bard1; BRCA1 associated RING domain 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 74213 Rbm26; RNA binding motif protein 26 K13192 RBM26; RNA-binding protein 26
E 26383 Fto; FTO alpha-ketoglutarate dependent dioxygenase K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 268420 Alkbh5; alkB homolog 5, RNA demethylase K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 230908 Tardbp; TAR DNA binding protein K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 67487 Dhx40; DEAH-box helicase 40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 16588 Kin; Kin17 DNA and RNA binding protein K13102 KIN; DNA/RNA-binding protein KIN17
D 228019 Mettl8; methyltransferase 8, methylcytidine K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 239706 Mettl22; methyltransferase 22, Kin17 lysine K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 100342 Tent5b; terminal nucleotidyltransferase 5B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 212943 Tent5a; terminal nucleotidyltransferase 5A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 74645 Tent5c; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 213449 Tent5d; terminal nucleotidyltransferase 5D K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 75553 Zc3h14; zinc finger CCCH type containing 14 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 83701 Srrt; serrate RNA effector molecule homolog (Arabidopsis) K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 60365 Rbm8a; RNA binding motif protein 8a K12876 RBM8A; RNA-binding protein 8A
E 17149 Magoh; mago homolog, exon junction complex core component K12877 MAGOH; protein mago nashi
E 66441 Magohb; mago homolog B, exon junction complex core component K12877 MAGOH; protein mago nashi
E 21681 Alyref; Aly/REF export factor K12881 THOC4; THO complex subunit 4
E 56009 Alyref2; Aly/REF export factor 2 K12881 THOC4; THO complex subunit 4
E 100043292 Alyreffm10; Aly/REF export factor family member 10 K12881 THOC4; THO complex subunit 4
E 100861880 Alyreffm11; Aly/REF export factor family member 11 K12881 THOC4; THO complex subunit 4
E 53817 Ddx39b; DEAD box helicase 39b K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 668137 Eif4a3l1; eukaryotic translation initiation factor 4A3 like 1 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 192170 Eif4a3; eukaryotic translation initiation factor 4A3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 434050 Gm5576; predicted pseudogene 5576 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 232236 Ccdc174; coiled-coil domain containing 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 192160 Casc3; exon junction complex subunit K14323 CASC3; protein CASC3
E 20220 Sap18; Sin3-associated polypeptide 18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 100041953 Sap18b; Sin3-associated polypeptide 18B K14324 SAP18; histone deacetylase complex subunit SAP18
E 18949 Pnn; pinin K13114 PNN; pinin
E 56215 Acin1; apoptotic chromatin condensation inducer 1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 19826 Rnps1; RNA binding protein with serine rich domain 1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 51796 Srrm1; serine/arginine repetitive matrix 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 225160 Thoc1; THO complex 1 K12878 THOC1; THO complex subunit 1
E 331401 Thoc2; THO complex 2 K12879 THOC2; THO complex subunit 2
E 100042165 Thoc2l; THO complex subunit 2-like K12879 THOC2; THO complex subunit 2
E 73666 Thoc3; THO complex 3 K12880 THOC3; THO complex subunit 3
E 21681 Alyref; Aly/REF export factor K12881 THOC4; THO complex subunit 4
E 56009 Alyref2; Aly/REF export factor 2 K12881 THOC4; THO complex subunit 4
E 100043292 Alyreffm10; Aly/REF export factor family member 10 K12881 THOC4; THO complex subunit 4
E 100861880 Alyreffm11; Aly/REF export factor family member 11 K12881 THOC4; THO complex subunit 4
E 107829 Thoc5; THO complex 5 K13174 THOC5; THO complex subunit 5
E 386612 Thoc6; THO complex 6 K13175 THOC6; THO complex subunit 6
E 66231 Thoc7; THO complex 7 K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 234069 Pcid2; PCI domain containing 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 20422 Sem1; SEM1, 26S proteasome complex subunit K10881 SHFM1; 26 proteasome complex subunit DSS1
E 223527 Eny2; ENY2 transcription and export complex 2 subunit K11368 ENY2; enhancer of yellow 2 transcription factor
E 26370 Cetn2; centrin 2 K10840 CETN2; centrin-2
E 12626 Cetn3; centrin 3 K16466 CETN3; centrin-3
E 54387 Mcm3ap; minichromosome maintenance complex component 3 associated protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 108989 Tpr; translocated promoter region, nuclear basket protein K09291 TPR; nucleoprotein TPR
E 66679 Rae1; ribonucleic acid export 1 K14298 RAE1; mRNA export factor
E 110379 Sec13; SEC13 homolog, nuclear pore and COPII coat complex component K14004 SEC13; protein transport protein SEC13
E 69736 Nup37; nucleoporin 37 K14302 NUP37; nuclear pore complex protein Nup37
E 445007 Nup85; nucleoporin 85 K14304 NUP85; nuclear pore complex protein Nup85
E 69912 Nup43; nucleoporin 43 K14305 NUP43; nuclear pore complex protein Nup43
E 18141 Nup50; nucleoporin 50 K14295 NUP50; nuclear pore complex protein Nup50
E 269113 Nup54; nucleoporin 54 K14308 NUP54; nuclear pore complex protein Nup54
E 18226 Nup62; nucleoporin 62 K14306 NUP62; nuclear pore complex protein Nup62
E 19069 Nup88; nucleoporin 88 K14318 NUP88; nuclear pore complex protein Nup88
E 71805 Nup93; nucleoporin 93 K14309 NUP93; nuclear pore complex protein Nup93
E 269966 Nup98; nucleoporin 98 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 103468 Nup107; nucleoporin 107 K14301 NUP107; nuclear pore complex protein Nup107
E 234865 Nup133; nucleoporin 133 K14300 NUP133; nuclear pore complex protein Nup133
E 227699 Nup188; nucleoporin 188 K14311 NUP188; nuclear pore complex protein Nup188
E 218210 Nup153; nucleoporin 153 K14296 NUP153; nuclear pore complex protein Nup153
E 170762 Nup155; nucleoporin 155 K14312 NUP155; nuclear pore complex protein Nup155
E 59015 Nup160; nucleoporin 160 K14303 NUP160; nuclear pore complex protein Nup160
E 69482 Nup35; nucleoporin 35 K14313 NUP35; nuclear pore complex protein Nup53
E 70699 Nup205; nucleoporin 205 K14310 NUP205; nuclear pore complex protein Nup205
E 54563 Nup210; nucleoporin 210 K14314 NUP210; nuclear pore complex protein Nup210
E 77595 Nup210l; nucleoporin 210-like K14314 NUP210; nuclear pore complex protein Nup210
E 227720 Nup214; nucleoporin 214 K14317 NUP214; nuclear pore complex protein Nup214
E 107939 Pom121; nuclear pore membrane protein 121 K14316 POM121; nuclear pore complex protein Nup121
E 195236 Pom121l2; POM121 transmembrane nucleoporin like 2 K14316 POM121; nuclear pore complex protein Nup121
E 71844 Nup58; nucleoporin 58 K14307 NUPL1; nucleoporin p58/p45
E 231042 Nup42; nucleoporin 42 K14321 NUPL2; nucleoporin-like protein 2
E 72787 Ndc1; NDC1 transmembrane nucleoporin K14315 NDC1; nucleoporin NDC1
E 72124 Seh1l; SEH1-like (S. cerevisiae K14299 SEH1; nucleoporin SEH1
E 19386 Ranbp2; RAN binding protein 2 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 75826 Senp2; SUMO/sentrin specific peptidase 2 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 114671 Semp2l2b; SUMO/sentrin specific peptidase 2-like 2B K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 231201 Semp2l2a; SUMO/sentrin specific peptidase 2-like 2A K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 408192 Gm9839; predicted gene 9839 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 408191 Semp2l1; SUMO/sentrin specific peptidase 2-like 1 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 223921 Aaas; achalasia, adrenocortical insufficiency, alacrimia K14320 AAAS; aladin
E 12626 Cetn3; centrin 3 K16466 CETN3; centrin-3
E 74412 Gle1; GLE1 RNA export mediator K18723 GLE1; nucleoporin GLE1
E 53319 Nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 170722 Nxf7; nuclear RNA export factor 7 K14284 NXF; nuclear RNA export factor
E 83454 Nxf2; nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 245610 Nxf3; nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 56488 Nxt1; NTF2-related export protein 1 K14285 NXT1_2; NTF2-related export protein 1/2
E 237082 Nxt2; nuclear transport factor 2-like export factor 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 19384 Ran; RAN, member RAS oncogene family K07936 RAN; GTP-binding nuclear protein Ran
E 19428 Rasl2-9; RAS-like, family 2, locus 9 K07936 RAN; GTP-binding nuclear protein Ran
E 75471 1700009N14Rik; RIKEN cDNA 1700009N14 gene K07936 RAN; GTP-binding nuclear protein Ran
E 11737 Anp32a; acidic nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 67628 Anp32b; acidic nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 69583 Tnfsf13; tumor necrosis factor (ligand) superfamily, member 13 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 15568 Elavl1; ELAV like RNA binding protein 1 K13088 ELAVL1; ELAV-like protein 1
E 15569 Elavl2; ELAV like RNA binding protein 1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 15571 Elavl3; ELAV like RNA binding protein 3 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 15572 Elavl4; ELAV like RNA binding protein 4 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 76577 Faf2; Fas associated factor family member 2 K18726 FAF2; FAS-associated factor 2
E 269523 Vcp; valosin containing protein K13525 VCP; transitional endoplasmic reticulum ATPase
E 207965 Vcpkmt; valosin containing protein lysine (K) methyltransferase K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 212999 Tnpo2; transportin 2 (importin 3, karyopherin beta 2b) K18727 TNPO2; transportin-2
E 103573 Xpo1; exportin 1 K14290 XPO1; exportin-1
E 65246 Xpo7; exportin 7 K18460 XPO7; exportin-7
E 66011 Ranbp17; RAN binding protein 17 K24115 RANBP17; Ran-binding protein 17
E 19387 Rangap1; RAN GTPase activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 70439 Taf15; TATA-box binding protein associated factor 15 K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E 13684 Eif4e; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 26987 Eif4e2; eukaryotic translation initiation factor 4E member 2 K03259 EIF4E; translation initiation factor 4E
E 218268 Eif4e1b; eukaryotic translation initiation factor 4E family member 1B K03259 EIF4E; translation initiation factor 4E
E 13682 Eif4a2; eukaryotic translation initiation factor 4A2 K03257 EIF4A; translation initiation factor 4A
E 13681 Eif4a1; eukaryotic translation initiation factor 4A1 K03257 EIF4A; translation initiation factor 4A
E 13690 Eif4g2; eukaryotic translation initiation factor 4, gamma 2 K03260 EIF4G; translation initiation factor 4G
E 230861 Eif4g3; eukaryotic translation initiation factor 4 gamma, 3 K03260 EIF4G; translation initiation factor 4G
E 208643 Eif4g1; eukaryotic translation initiation factor 4, gamma 1 K03260 EIF4G; translation initiation factor 4G
E 75705 Eif4b; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 22384 Eif4h; eukaryotic translation initiation factor 4H K24086 EIF4H; translation initiation factor 4H
E 13685 Eif4ebp1; eukaryotic translation initiation factor 4E binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 13688 Eif4ebp2; eukaryotic translation initiation factor 4E binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 108112 Eif4ebp3; eukaryotic translation initiation factor 4E binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 74203 Eif4enif1; eukaryotic translation initiation factor 4E nuclear import factor 1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 52477 Angel2; angel homolog 2 K18729 ANGEL; protein angel
E 68737 Angel1; angel homolog 1 K18729 ANGEL; protein angel
E 14265 Fmr1; fragile X messenger ribonucleoprotein 1 K15516 FMR; fragile X mental retardation protein
E 14359 Fxr1; FMR1 autosomal homolog 1 K15516 FMR; fragile X mental retardation protein
E 23879 Fxr2; FMR1 autosomal homolog 2 K15516 FMR; fragile X mental retardation protein
E 20430 Cyfip1; cytoplasmic FMR1 interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 76884 Cyfip2; cytoplasmic FMR1 interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 216766 Gemin5; gem nuclear organelle associated protein 5 K13133 GEMIN5; gem associated protein 5
E 21335 Tacc3; transforming, acidic coiled-coil containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 12877 Cpeb1; cytoplasmic polyadenylation element binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 208922 Cpeb3; cytoplasmic polyadenylation element binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 231207 Cpeb2; cytoplasmic polyadenylation element binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 67579 Cpeb4; cytoplasmic polyadenylation element binding protein 4 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 13205 Ddx3x; DEAD box helicase 3, X-linked K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 110957 D1Pas1; DNA segment, Chr 1, Pasteur Institute 1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 227331 Gigyf2; GRB10 interacting GYF protein 2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 57330 Gigyf1; GRB10 interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 18458 Pabpc1; poly(A) binding protein, cytoplasmic 1 K13126 PABPC; polyadenylate-binding protein
E 93728 Pabpc5; poly(A) binding protein, cytoplasmic 5 K13126 PABPC; polyadenylate-binding protein
E 230721 Pabpc4; poly(A) binding protein, cytoplasmic 4 K13126 PABPC; polyadenylate-binding protein
E 381404 Pabpc1l; poly(A) binding protein, cytoplasmic 1-like K13126 PABPC; polyadenylate-binding protein
E 67543 Pabpc6; poly(A) binding protein, cytoplasmic 6 K13126 PABPC; polyadenylate-binding protein
E 241989 Pabpc4l; poly(A) binding protein, cytoplasmic 4-like K13126 PABPC; polyadenylate-binding protein
E 18459 Pabpc2; poly(A) binding protein, cytoplasmic 2 K13126 PABPC; polyadenylate-binding protein
E 245545 Pabpc1l2a; poly(A) binding protein, cytoplasmic 1-like 2A K13126 PABPC; polyadenylate-binding protein
E 668382 Pabpc1l2b; poly(A) binding protein, cytoplasmic 1-like 2B K13126 PABPC; polyadenylate-binding protein
E 218693 Paip1; polyadenylate binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 67869 Paip2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 232164 Paip2b; poly(A) binding protein interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 108077 Skic2; SKI2 subunit of superkiller complex K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 54006 Deaf1; DEAF1, transcription factor K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 68995 Mcts1; malignant T cell amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 66405 Mcts2; malignant T cell amplified sequence 2 K07575 MCTS; malignant T-cell-amplified sequence
E 68184 Denr; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 11810 Apobec1; apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 69865 A1cf; APOBEC1 complementation factor K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 78428 Pym1; PYM homolog 1, exon junction complex associated factor K14294 WIBG; partner of Y14 and mago
E 15382 Hnrnpa1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 229279 Hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 545091 Hnrnpa1l2-ps2; heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 76626 Msi2; musashi RNA-binding protein 2 K14411 MSI; RNA-binding protein Musashi
E 17690 Msi1; musashi RNA-binding protein 1 K14411 MSI; RNA-binding protein Musashi
E 70248 Dazap1; DAZ associated protein 1 K14411 MSI; RNA-binding protein Musashi
E 56422 Hbs1l; Hbs1-like (S. cerevisiae) K14416 HBS1; elongation factor 1 alpha-like protein
E 105083 Pelo; pelota mRNA surveillance and ribosome rescue factor K06965 PELO; protein pelota
E 54196 Pabpn1; poly(A) binding protein, nuclear 1 K14396 PABPN1; polyadenylate-binding protein 2
E 382035 Pabpn1l; poly(A)binding protein nuclear 1-like K14396 PABPN1; polyadenylate-binding protein 2
E 13680 Ddx19a; DEAD box helicase 19a K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 234733 Ddx19b; DEAD box helicase 19b K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 30959 Ddx25; DEAD box helicase 25 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7]
E 67439 Xab2; XPA binding protein 2 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 66118 Sarnp; SAP domain containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 100088 Rcc1; regulator of chromosome condensation 1 K11493 RCC1; regulator of chromosome condensation
E 67557 Larp6; La ribonucleoprotein 6, translational regulator K18733 LARP6; la-related protein 6
E 19290 Pura; purine rich element binding protein A K21772 PURA; transcriptional activator protein Pur-alpha
E 19291 Purb; purine rich element binding protein B K21799 PURB; transcriptional activator protein Pur-beta
E 73826 Poldip3; polymerase (DNA-directed), delta interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 70579 Zc3h11a; zinc finger CCCH type containing 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 232798 Leng8; leukocyte receptor cluster (LRC) member 8 K23802 LENG8; SAC3 family protein LENG8/THP3
E 67578 Patl2; protein associated with topoisomerase II homolog 2 (yeast) K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 225363 Etf1; eukaryotic translation termination factor 1 K03265 ETF1; peptide chain release factor subunit 1
E 14853 Gspt2; G1 to S phase transition 2 K03267 ERF3; peptide chain release factor subunit 3
E 14852 Gspt1; G1 to S phase transition 1 K03267 ERF3; peptide chain release factor subunit 3
E 19704 Upf1; UPF1 RNA helicase and ATPase K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 326622 Upf2; UPF2 regulator of nonsense transcripts homolog (yeast) K14327 UPF2; regulator of nonsense transcripts 2
E 68134 Upf3b; UPF3 regulator of nonsense transcripts homolog B (yeast) K14328 UPF3; regulator of nonsense transcripts 3
E 67031 Upf3a; UPF3 regulator of nonsense transcripts homolog A (yeast) K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 19052 Ppp2ca; protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 19053 Ppp2cb; protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 51792 Ppp2r1a; protein phosphatase 2, regulatory subunit A, alpha K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 73699 Ppp2r1b; protein phosphatase 2, regulatory subunit A, beta K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 52432 Ppp2r2d; protein phosphatase 2, regulatory subunit B, delta K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 72930 Ppp2r2b; protein phosphatase 2, regulatory subunit B, beta K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 269643 Ppp2r2c; protein phosphatase 2, regulatory subunit B, gamma K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 71978 Ppp2r2a; protein phosphatase 2, regulatory subunit B, alpha K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 100039815 Gm2436; predicted gene 2436 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 100039830 Gm2446; predicted gene 2446 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 59032 Ppp2r3c; protein phosphatase 2, regulatory subunit B'', gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 235542 Ppp2r3a; protein phosphatase 2, regulatory subunit B'', alpha K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 19054 Ppp2r3d; protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 225849 Ppp2r5b; protein phosphatase 2, regulatory subunit B', beta K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 26931 Ppp2r5c; protein phosphatase 2, regulatory subunit B', gamma K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 21770 Ppp2r5d; protein phosphatase 2, regulatory subunit B', delta K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 26932 Ppp2r5e; protein phosphatase 2, regulatory subunit B', epsilon K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 226849 Ppp2r5a; protein phosphatase 2, regulatory subunit B', alpha K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 233789 Smg1; SMG1 nonsense mediated mRNA decay associated PI3K related kinase K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 229512 Smg5; SMG5 nonsense mediated mRNA decay factor K11125 SMG5; protein SMG5
E 103677 Smg6; SMG6 nonsense mediated mRNA decay factor K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 226517 Smg7; SMG7 nonsense mediated mRNA decay factor K14409 SMG7; protein SMG7
E 74133 Smg8; SMG8 nonsense mediated mRNA decay factor K18734 SMG8; protein SMG8
E 71997 Smg9; SMG9 nonsense mediated mRNA decay factor K18735 SMG9; protein SMG9
E 227331 Gigyf2; GRB10 interacting GYF protein 2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 57330 Gigyf1; GRB10 interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 75420 Secisbp2; SECIS binding protein 2 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 70354 Secisbp2l; SECIS binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 71723 Dhx34; DExH-box helicase 34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 14904 Gtpbp1; GTP binding protein 1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 52874 Pum3; pumilio RNA-binding family member 3 K14844 PUF6; pumilio homology domain family member 6
E 17918 Myo5a; myosin VA K10357 MYO5; myosin V
E 17919 Myo5b; myosin VB K10357 MYO5; myosin V
E 208943 Myo5c; myosin VC K10357 MYO5; myosin V
E 12121 Bicd1; BICD cargo adaptor 1 K18739 BICD; protein bicaudal D
E 76895 Bicd2; BICD cargo adaptor 2 K18739 BICD; protein bicaudal D
E 241624 Exd1; exonuclease 3'-5' domain containing 1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 11465 Actg1; actin, gamma, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 11461 Actb; actin, beta K05692 ACTB_G1; actin beta/gamma 1
E 17196 Mbp; myelin basic protein K17269 MBP; myelin basic protein
E 22352 Vim; vimentin K07606 VIM; vimentin
E 17750 Mt2; metallothionein 2 K14739 MT1_2; metallothionein 1/2
E 17748 Mt1; metallothionein 1 K14739 MT1_2; metallothionein 1/2
E 17869 Myc; myelocytomatosis oncogene K04377 MYC; Myc proto-oncogene protein
E 14559 Gdf1; growth differentiation factor 1 K05495 GDF1; growth differentiation factor 1
E 21389 Tbx6; T-box 6 K10180 TBX6; T-box protein 6
E 332397 Nanos1; nanos C2HC-type zinc finger 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 58203 Zbp1; Z-DNA binding protein 1 K12965 ZBP1; Z-DNA binding protein 1
E 16549 Khsrp; KH-type splicing regulatory protein K13210 FUBP; far upstream element-binding protein
E 51886 Fubp1; far upstream element (FUSE) binding protein 1 K13210 FUBP; far upstream element-binding protein
E 320267 Fubp3; far upstream element (FUSE) binding protein 3 K13210 FUBP; far upstream element-binding protein
E 13628 Eef1a2; eukaryotic translation elongation factor 1 alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 13627 Eef1a1; eukaryotic translation elongation factor 1 alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 67160 Eef1g; eukaryotic translation elongation factor 1 gamma K03233 EEF1G; elongation factor 1-gamma
E 53379 Hnrnpa2b1; heterogeneous nuclear ribonucleoprotein A2/B1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 23897 Hax1; HCLS1 associated X-1 K16220 HAX1; HCLS1-associated protein X-1
E 15463 Agfg1; ArfGAP with FG repeats 1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 20853 Stau1; staufen double-stranded RNA binding protein 1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 29819 Stau2; staufen double-stranded RNA binding protein 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 140488 Igf2bp3; insulin-like growth factor 2 mRNA binding protein 3 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 19205 Ptbp1; polypyrimidine tract binding protein 1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 12877 Cpeb1; cytoplasmic polyadenylation element binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 208922 Cpeb3; cytoplasmic polyadenylation element binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 231207 Cpeb2; cytoplasmic polyadenylation element binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 67579 Cpeb4; cytoplasmic polyadenylation element binding protein 4 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 14265 Fmr1; fragile X messenger ribonucleoprotein 1 K15516 FMR; fragile X mental retardation protein
E 14359 Fxr1; FMR1 autosomal homolog 1 K15516 FMR; fragile X mental retardation protein
E 23879 Fxr2; FMR1 autosomal homolog 2 K15516 FMR; fragile X mental retardation protein
E 20430 Cyfip1; cytoplasmic FMR1 interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 76884 Cyfip2; cytoplasmic FMR1 interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 18521 Pcbp2; poly(rC) binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 59093 Pcbp3; poly(rC) binding protein 3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 59092 Pcbp4; poly(rC) binding protein 4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 53872 Caprin1; cell cycle associated protein 1 K18743 CAPRIN1; caprin-1
E 232560 Caprin2; caprin family member 2 K18744 CAPRIN2; caprin-2
E 22608 Ybx1; Y box protein 1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 24127 Xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 214150 Ago3; argonaute RISC catalytic subunit 3 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 236511 Ago1; argonaute RISC catalytic subunit 1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 76850 Ago4; argonaute RISC catalytic subunit 4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 239528 Ago2; argonaute RISC catalytic subunit 2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 13684 Eif4e; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 26987 Eif4e2; eukaryotic translation initiation factor 4E member 2 K03259 EIF4E; translation initiation factor 4E
E 218268 Eif4e1b; eukaryotic translation initiation factor 4E family member 1B K03259 EIF4E; translation initiation factor 4E
E 19704 Upf1; UPF1 RNA helicase and ATPase K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 13205 Ddx3x; DEAD box helicase 3, X-linked K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 110957 D1Pas1; DNA segment, Chr 1, Pasteur Institute 1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 26900 Ddx3y; DEAD box helicase 3, Y-linked K17642 DDX3Y; ATP-dependent RNA helicase DDX3Y [EC:5.6.2.7]
E 13209 Ddx6; DEAD-box helicase 6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 108797 Mex3b; mex3 RNA binding family member B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 237400 Mex3d; mex3 RNA binding family member D K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 240396 Mex3c; mex3 RNA binding family member C K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 72640 Mex3a; mex3 RNA binding family member A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 66587 Fastk; Fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 241846 Lsm14b; LSM family member 14B K18749 LSM14; protein LSM14
E 67070 Lsm14a; LSM14A mRNA processing body assembly factor K18749 LSM14; protein LSM14
E 23983 Pcbp1; poly(rC) binding protein 1 K12889 PCBP1; poly(rC)-binding protein 1
E 18521 Pcbp2; poly(rC) binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 22608 Ybx1; Y box protein 1 K09276 YBX1; Y-box-binding protein 1
E 16475 Ajuba; ajuba LIM protein K16682 AJUBA; LIM domain-containing protein
E 101543 Wtip; WT1 interacting protein K16682 AJUBA; LIM domain-containing protein
E 29806 Limd1; LIM domains containing 1 K16682 AJUBA; LIM domain-containing protein
E 11810 Apobec1; apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 80287 Apobec3; apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3 K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 17454 Mov10; Mov10 RISC complex RNA helicase K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 52830 Pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 238799 Tnpo1; transportin 1 K18752 TNPO1; transportin-1
E 233789 Smg1; SMG1 nonsense mediated mRNA decay associated PI3K related kinase K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 229512 Smg5; SMG5 nonsense mediated mRNA decay factor K11125 SMG5; protein SMG5
E 103677 Smg6; SMG6 nonsense mediated mRNA decay factor K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 226517 Smg7; SMG7 nonsense mediated mRNA decay factor K14409 SMG7; protein SMG7
E 22695 Zfp36; zinc finger protein 36 K15308 TTP; tristetraprolin
E 12192 Zfp36l1; zinc finger protein 36, C3H type-like 1 K18753 ZFP36L; butyrate response factor
E 12193 Zfp36l2; zinc finger protein 36, C3H type-like 2 K18753 ZFP36L; butyrate response factor
E 380669 Lin28b; lin-28 homolog B K18754 LIN28; protein lin-28
E 83557 Lin28a; lin-28 homolog A K18754 LIN28; protein lin-28
E 15194 Htt; huntingtin K04533 HD; huntingtin
E 320727 Ipo8; importin 8 K18755 IPO8; importin-8
E 83675 Bicc1; BicC family RNA binding protein 1 K18756 BICC1; protein bicaudal C
E 15382 Hnrnpa1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 229279 Hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 545091 Hnrnpa1l2-ps2; heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 18747 Prkaca; protein kinase, cAMP dependent, catalytic, alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 18749 Prkacb; protein kinase, cAMP dependent, catalytic, beta K04345 PKA; protein kinase A [EC:2.7.11.11]
E 73158 Larp1; La ribonucleoprotein 1, translational regulator K18757 LARP1; la-related protein 1
E 214048 Larp1b; La ribonucleoprotein 1B K18757 LARP1; la-related protein 1
E 20239 Atxn2; ataxin 2 K23625 ATXN2_2L; ataxin 2/2L
E 233871 Atxn2l; ataxin 2-like K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 70640 Dcp2; decapping mRNA 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 75901 Dcp1a; decapping mRNA 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 319618 Dcp1b; decapping mRNA 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 67207 Lsm1; LSM1 homolog, mRNA degradation associated K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 27756 Lsm2; LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 67678 Lsm3; LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 50783 Lsm4; LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 66373 Lsm5; LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 78651 Lsm6; LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 66094 Lsm7; LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 76522 Lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 16593 Klc1; kinesin light chain 1 K10407 KLC; kinesin light chain
E 16594 Klc2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 232943 Klc3; kinesin light chain 3 K10407 KLC; kinesin light chain
E 74764 Klc4; kinesin light chain 4 K10407 KLC; kinesin light chain
E 17918 Myo5a; myosin VA K10357 MYO5; myosin V
E 17919 Myo5b; myosin VB K10357 MYO5; myosin V
E 208943 Myo5c; myosin VC K10357 MYO5; myosin V
E 22145 Tuba4a; tubulin, alpha 4A K07374 TUBA; tubulin alpha
E 22144 Tuba3a; tubulin, alpha 3A K07374 TUBA; tubulin alpha
E 22142 Tuba1a; tubulin, alpha 1A K07374 TUBA; tubulin alpha
E 22146 Tuba1c; tubulin, alpha 1C K07374 TUBA; tubulin alpha
E 22147 Tuba3b; tubulin, alpha 3B K07374 TUBA; tubulin alpha
E 22143 Tuba1b; tubulin, alpha 1B K07374 TUBA; tubulin alpha
E 53857 Tuba8; tubulin, alpha 8 K07374 TUBA; tubulin alpha
E 238463 Tubal3; tubulin, alpha-like 3 K07374 TUBA; tubulin alpha
E 12877 Cpeb1; cytoplasmic polyadenylation element binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 208922 Cpeb3; cytoplasmic polyadenylation element binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 231207 Cpeb2; cytoplasmic polyadenylation element binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 67579 Cpeb4; cytoplasmic polyadenylation element binding protein 4 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 216766 Gemin5; gem nuclear organelle associated protein 5 K13133 GEMIN5; gem associated protein 5
E 21335 Tacc3; transforming, acidic coiled-coil containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 233833 Tnrc6a; trinucleotide repeat containing 6a K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 213988 Tnrc6b; trinucleotide repeat containing 6b K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 217351 Tnrc6c; trinucleotide repeat containing 6C K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 234594 Cnot1; CCR4-NOT transcription complex, subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 72068 Cnot2; CCR4-NOT transcription complex, subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 232791 Cnot3; CCR4-NOT transcription complex, subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 53621 Cnot4; CCR4-NOT transcription complex, subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 104625 Cnot6; CCR4-NOT transcription complex, subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 231464 Cnot6l; CCR4-NOT transcription complex, subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 18983 Cnot7; CCR4-NOT transcription complex, subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 69125 Cnot8; CCR4-NOT transcription complex, subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 233103 Garre1; granule associated Rac and RHOG effector 1 K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 208718 Dis3l2; DIS3 like 3'-5' exoribonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 103135 Pan2; PAN2 poly(A) specific ribonuclease subunit K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 72587 Pan3; PAN3 poly(A) specific ribonuclease subunit K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 12226 Btg1; BTG anti-proliferation factor 1 K14443 TOB; protein Tob/BTG
E 12227 Btg2; BTG anti-proliferation factor 2 K14443 TOB; protein Tob/BTG
E 12228 Btg3; BTG anti-proliferation factor 3 K14443 TOB; protein Tob/BTG
E 194735 Btg1c; BTG anti-proliferation factor 1C K14443 TOB; protein Tob/BTG
E 22057 Tob1; transducer of ErbB-2.1 K14443 TOB; protein Tob/BTG
E 436199 Btg1b; BTG anti-proliferation factor 1B K14443 TOB; protein Tob/BTG
E 56057 Btg4; BTG anti-proliferation factor 4 K14443 TOB; protein Tob/BTG
E 57259 Tob2; transducer of ERBB2, 2 K14443 TOB; protein Tob/BTG
E 74203 Eif4enif1; eukaryotic translation initiation factor 4E nuclear import factor 1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 225929 Patl1; protein associated with topoisomerase II homolog 1 (yeast) K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 353190 Edc3; enhancer of mRNA decapping 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 234699 Edc4; enhancer of mRNA decapping 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 378430 Nanos2; nanos C2HC-type zinc finger 2 K18760 NANOS2; protein nanos 2
E 244551 Nanos3; nanos C2HC-type zinc finger 3 K18761 NANOS3; protein nanos 3
E 326622 Upf2; UPF2 regulator of nonsense transcripts homolog (yeast) K14327 UPF2; regulator of nonsense transcripts 2
E 68134 Upf3b; UPF3 regulator of nonsense transcripts homolog B (yeast) K14328 UPF3; regulator of nonsense transcripts 3
E 67031 Upf3a; UPF3 regulator of nonsense transcripts homolog A (yeast) K14328 UPF3; regulator of nonsense transcripts 3
E 20821 Trim21; tripartite motif-containing 21 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 636931 Trim71; tripartite motif-containing 71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 67710 Polr2g; polymerase (RNA) II (DNA directed) polypeptide G K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 19106 Eif2ak2; eukaryotic translation initiation factor 2-alpha kinase 2 K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 317755 Zar1; zygote arrest 1 K18762 ZAR1; zygote arrest protein 1
E 545824 Zar1l; zygote arrest 1-like K18762 ZAR1; zygote arrest protein 1
E 213541 Ythdf2; YTH N6-methyladenosine RNA binding protein 2 K20102 YTHDF; YTH domain-containing family protein
E 228994 Ythdf1; YTH N6-methyladenosine RNA binding protein 1 K20102 YTHDF; YTH domain-containing family protein
E 229096 Ythdf3; YTH N6-methyladenosine RNA binding protein 3 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 21843 Tial1; Tia1 cytotoxic granule-associated RNA binding protein-like 1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 21841 Tia1; cytotoxic granule-associated RNA binding protein 1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 18458 Pabpc1; poly(A) binding protein, cytoplasmic 1 K13126 PABPC; polyadenylate-binding protein
E 93728 Pabpc5; poly(A) binding protein, cytoplasmic 5 K13126 PABPC; polyadenylate-binding protein
E 230721 Pabpc4; poly(A) binding protein, cytoplasmic 4 K13126 PABPC; polyadenylate-binding protein
E 381404 Pabpc1l; poly(A) binding protein, cytoplasmic 1-like K13126 PABPC; polyadenylate-binding protein
E 67543 Pabpc6; poly(A) binding protein, cytoplasmic 6 K13126 PABPC; polyadenylate-binding protein
E 241989 Pabpc4l; poly(A) binding protein, cytoplasmic 4-like K13126 PABPC; polyadenylate-binding protein
E 18459 Pabpc2; poly(A) binding protein, cytoplasmic 2 K13126 PABPC; polyadenylate-binding protein
E 245545 Pabpc1l2a; poly(A) binding protein, cytoplasmic 1-like 2A K13126 PABPC; polyadenylate-binding protein
E 668382 Pabpc1l2b; poly(A) binding protein, cytoplasmic 1-like 2B K13126 PABPC; polyadenylate-binding protein
E 20853 Stau1; staufen double-stranded RNA binding protein 1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 29819 Stau2; staufen double-stranded RNA binding protein 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 14265 Fmr1; fragile X messenger ribonucleoprotein 1 K15516 FMR; fragile X mental retardation protein
E 14359 Fxr1; FMR1 autosomal homolog 1 K15516 FMR; fragile X mental retardation protein
E 23879 Fxr2; FMR1 autosomal homolog 2 K15516 FMR; fragile X mental retardation protein
E 58203 Zbp1; Z-DNA binding protein 1 K12965 ZBP1; Z-DNA binding protein 1
E 15568 Elavl1; ELAV like RNA binding protein 1 K13088 ELAVL1; ELAV-like protein 1
E 27041 G3bp1; G3BP stress granule assembly factor 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 23881 G3bp2; G3BP stress granule assembly factor 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 229317 Eif2a; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 27979 Eif3b; eukaryotic translation initiation factor 3, subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 13682 Eif4a2; eukaryotic translation initiation factor 4A2 K03257 EIF4A; translation initiation factor 4A
E 13681 Eif4a1; eukaryotic translation initiation factor 4A1 K03257 EIF4A; translation initiation factor 4A
E 668137 Eif4a3l1; eukaryotic translation initiation factor 4A3 like 1 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 192170 Eif4a3; eukaryotic translation initiation factor 4A3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 434050 Gm5576; predicted pseudogene 5576 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 75705 Eif4b; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 13690 Eif4g2; eukaryotic translation initiation factor 4, gamma 2 K03260 EIF4G; translation initiation factor 4G
E 230861 Eif4g3; eukaryotic translation initiation factor 4 gamma, 3 K03260 EIF4G; translation initiation factor 4G
E 208643 Eif4g1; eukaryotic translation initiation factor 4, gamma 1 K03260 EIF4G; translation initiation factor 4G
E 110651 Rps6ka3; ribosomal protein S6 kinase polypeptide 3 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 20111 Rps6ka1; ribosomal protein S6 kinase polypeptide 1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 20112 Rps6ka2; ribosomal protein S6 kinase, polypeptide 2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 67071 Rps6ka6; ribosomal protein S6 kinase polypeptide 6 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 14694 Rack1; receptor for activated C kinase 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 22030 Traf2; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 53319 Nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 170722 Nxf7; nuclear RNA export factor 7 K14284 NXF; nuclear RNA export factor
E 83454 Nxf2; nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 245610 Nxf3; nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 15185 Hdac6; histone deacetylase 6 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 219249 Tdrd3; tudor domain containing 3 K18404 TDRD3; tudor domain-containing protein 3
E 207214 Larp4; La ribonucleoprotein 4 K18763 LARP4; la-related protein 4
E 217980 Larp4b; La ribonucleoprotein 4B K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 75901 Dcp1a; decapping mRNA 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 319618 Dcp1b; decapping mRNA 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 70640 Dcp2; decapping mRNA 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 13209 Ddx6; DEAD-box helicase 6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 353190 Edc3; enhancer of mRNA decapping 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 234699 Edc4; enhancer of mRNA decapping 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 225929 Patl1; protein associated with topoisomerase II homolog 1 (yeast) K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 67207 Lsm1; LSM1 homolog, mRNA degradation associated K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 27756 Lsm2; LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 67678 Lsm3; LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 50783 Lsm4; LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 66373 Lsm5; LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 78651 Lsm6; LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 66094 Lsm7; LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 76522 Lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 24127 Xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 24128 Xrn2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 75686 Nudt16; nudix hydrolase 16 K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
E 73532 Nudt16l2; nudix hydrolase 16 like 2 K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 69305 Dcps; decapping enzyme, scavenger K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 78455 Helz; helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 66583 Exosc1; exosome component 1 K07573 CSL4; exosome complex component CSL4
E 227715 Exosc2; exosome component 2 K03679 RRP4; exosome complex component RRP4
E 66362 Exosc3; exosome component 3 K03681 RRP40; exosome complex component RRP40
E 109075 Exosc4; exosome component 4 K11600 RRP41; exosome complex component RRP41
E 27998 Exosc5; exosome component 5 K12590 RRP46; exosome complex component RRP46
E 72544 Exosc6; exosome component 6 K12587 MTR3; exosome complex component MTR3
E 66446 Exosc7; exosome component 7 K12589 RRP42; exosome complex component RRP42
E 69639 Exosc8; exosome component 8 K12586 RRP43; exosome complex component RRP43
E 50911 Exosc9; exosome component 9 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 72662 Dis3; DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 213550 Dis3l; DIS3 like exosome 3'-5' exoribonuclease K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 50912 Exosc10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 57316 C1d; C1D nuclear receptor co-repressor K12592 C1D; exosome complex protein LRP1
E 68533 Mphosph6; M phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 234311 Ddx60; DExD/H box helicase 60 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E 210106 Tent4a; terminal nucleotidyltransferase 4A K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 214627 Tent4b; terminal nucleotidyltransferase 4B K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 319885 Zcchc7; zinc finger, CCHC domain containing 7 K12597 AIR1_2; protein AIR1/2
E 72198 Mtrex; Mtr4 exosome RNA helicase K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 108077 Skic2; SKI2 subunit of superkiller complex K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 218343 Skic3; SKI3 subunit of superkiller complex K12600 SKI3; superkiller protein 3
E 66317 Skic8; SKI8 subunit of superkiller complex K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 104625 Cnot6; CCR4-NOT transcription complex, subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 231464 Cnot6l; CCR4-NOT transcription complex, subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 234594 Cnot1; CCR4-NOT transcription complex, subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 72068 Cnot2; CCR4-NOT transcription complex, subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 232791 Cnot3; CCR4-NOT transcription complex, subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 53621 Cnot4; CCR4-NOT transcription complex, subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 18983 Cnot7; CCR4-NOT transcription complex, subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 69125 Cnot8; CCR4-NOT transcription complex, subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 58184 Cnot9; CCR4-NOT transcription complex, subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 78893 Cnot10; CCR4-NOT transcription complex, subunit 10 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 103135 Pan2; PAN2 poly(A) specific ribonuclease subunit K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 72587 Pan3; PAN3 poly(A) specific ribonuclease subunit K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 74108 Parn; poly(A)-specific ribonuclease (deadenylation nuclease) K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 240023 Pnldc1; poly(A)-specific ribonuclease (PARN)-like domain containing 1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 72162 Dhx36; DEAH-box helicase 36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 12226 Btg1; BTG anti-proliferation factor 1 K14443 TOB; protein Tob/BTG
E 12227 Btg2; BTG anti-proliferation factor 2 K14443 TOB; protein Tob/BTG
E 12228 Btg3; BTG anti-proliferation factor 3 K14443 TOB; protein Tob/BTG
E 194735 Btg1c; BTG anti-proliferation factor 1C K14443 TOB; protein Tob/BTG
E 22057 Tob1; transducer of ErbB-2.1 K14443 TOB; protein Tob/BTG
E 436199 Btg1b; BTG anti-proliferation factor 1B K14443 TOB; protein Tob/BTG
E 56057 Btg4; BTG anti-proliferation factor 4 K14443 TOB; protein Tob/BTG
E 57259 Tob2; transducer of ERBB2, 2 K14443 TOB; protein Tob/BTG
E 12981 Csf2; colony stimulating factor 2 (granulocyte-macrophage) K05427 CSF2; granulocyte-macrophage colony-stimulating factor
E 12457 Noct; nocturnin K18764 NOCT; nocturnin [EC:3.1.3.108]
E 67276 Eri1; exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 71151 Eri2; exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 69305 Dcps; decapping enzyme, scavenger K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 211948 Pde12; phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 64602 Ireb2; iron responsive element binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 78455 Helz; helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 229003 Helz2; helicase with zinc finger 2, transcriptional coactivator K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 217827 Nrde2; nrde-2 necessary for RNA interference, domain containing K26109 NRDE2; nuclear exosome regulator NRDE2
E 74480 Samd4; sterile alpha motif domain containing 4 K27396 SMG; protein Smaug
E 233033 Samd4b; sterile alpha motif domain containing 4B K27396 SMG; protein Smaug
E 230393 Focad; focadhesin K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 19752 Rnase1; ribonuclease, RNase A family, 1 (pancreatic) K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 54159 Rnase2b; ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin) K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 53877 Ear4; eosinophil-associated, ribonuclease A family, member 4 K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 53873 Ear7; eosinophil-associated, ribonuclease A family, member 7 K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 58809 Rnase4; ribonuclease, RNase A family 4 K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 78416 Rnase6; ribonuclease, RNase A family, 6 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 497113 Rnase11; ribonuclease, RNase A family, 11 (non-active) K16633 RNASE11; ribonuclease 11 [EC:3.1.27.-]
E 230738 Zc3h12a; zinc finger CCCH type containing 12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 244871 Zc3h12c; zinc finger CCCH type containing 12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 547176 Zc3h12b; zinc finger CCCH-type containing 12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 237256 Zc3h12d; zinc finger CCCH type containing 12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 14000 Drosha; drosha, ribonuclease type III K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 104444 Rexo2; RNA exonuclease 2 K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 13806 Eno1; enolase 1, alpha non-neuron K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 13807 Eno2; enolase 2, gamma neuronal K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 13808 Eno3; enolase 3, beta muscle K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 433182 Eno1b; enolase 1B, retrotransposed K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 71701 Pnpt1; polyribonucleotide nucleotidyltransferase 1 K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 18641 Pfkl; phosphofructokinase, liver, B-type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 18642 Pfkm; phosphofructokinase, muscle K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 56421 Pfkp; phosphofructokinase, platelet K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 15526 Hspa9; heat shock protein 9 K04043 dnaK; molecular chaperone DnaK
E 15510 Hspd1; heat shock protein 1 (chaperonin) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 227715 Exosc2; exosome component 2 K03679 RRP4; exosome complex component RRP4
E 66583 Exosc1; exosome component 1 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 109075 Exosc4; exosome component 4 K11600 RRP41; exosome complex component RRP41
E 66446 Exosc7; exosome component 7 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024