+D Messenger RNA Biogenesis KO
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Prokaryotic Defense System - Nitrosococcus wardiae
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ACRISPR-Cas system
B Universal Cas proteins
C E3U44_12660 cas1c; type I-C CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
C E3U44_12665 cas2; CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
B Type I CRISPR-Cas system
C Type I signiture cas proteins
C Subtype I-A factors
D E3U44_12655 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-B factors
D E3U44_12655 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-C factors
D E3U44_12645 cas8c; type I-C CRISPR-associated protein Cas8c/Csd1 K19117 csd1; CRISPR-associated protein Csd1
D E3U44_12650 cas7c; type I-C CRISPR-associated protein Cas7/Csd2 K19118 csd2; CRISPR-associated protein Csd2
D E3U44_12655 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D E3U44_12640 cas5c; type I-C CRISPR-associated protein Cas5 K19119 cas5d; CRISPR-associated protein Cas5d
C Subtype I-D factors
D E3U44_12655 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-E factors
D E3U44_03920 cas6e; type I-E CRISPR-associated protein Cas6/Cse3/CasE K19126 casE; CRISPR system Cascade subunit CasE
C Subtype I-F factors
C Subtype I-U factors
B Type II CRISPR-Cas system
C Type II signiture cas proteins
C Subtype II-A factors
C Subtype II-B factors
D E3U44_12655 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
B Type III CRISPR-Cas system
C Type III signiture cas proteins
C Subtype III-A factors
C Subtype III-B factors
C Subtype III-U factors
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ARestriction and modification system (R-M system)
B Type I R-M system
C E3U44_07305 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C E3U44_13775 HsdR family type I site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C E3U44_18365 HsdR family type I site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C E3U44_00535 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C E3U44_07300 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C E3U44_13785 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C E3U44_18380 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C E3U44_17510 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C E3U44_18710 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C E3U44_00555 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C E3U44_07295 SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C E3U44_13790 SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C E3U44_17515 SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C E3U44_18740 SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C E3U44_00560 SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
B Type II R-M system
C Restriction endonucleases
C DNA methyltransferases
D E3U44_19045 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D E3U44_19135 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D E3U44_00085 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D E3U44_07040 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D E3U44_10715 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Type III R-M system
B Type IV R-M system
C E3U44_00325 restriction endonuclease K07448 mrr; restriction system protein
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AToxin-antitoxin system (TA system)
B Type I TA system
C Hok-Sok
C SymE-SymR
C Ldr-Rdl
C TisB-IstR
C Ibs-Sib
C ShoB-OhsC
C RalR-RalA
B Type II TA system
C MazF-MazE
C ChpB-ChpS
C YhaV-PrlF
D E3U44_01110 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K19156 prlF; antitoxin PrlF
C RelE/StbE-RelB/StbD
D E3U44_09845 type II toxin-antitoxin system RelE/ParE family toxin K06218 relE; mRNA interferase RelE/StbE
D E3U44_01190 type II toxin-antitoxin system RelE/ParE family toxin K06218 relE; mRNA interferase RelE/StbE
D E3U44_09840 TraY domain-containing protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D E3U44_16955 TraY domain-containing protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D E3U44_01195 ribbon-helix-helix protein, CopG family K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
C YafQ-dinJ
C YoeB-YefM
D E3U44_16970 Txe/YoeB family addiction module toxin K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D E3U44_16975 type II toxin-antitoxin system Phd/YefM family antitoxin K19159 yefM; antitoxin YefM
C HipA-HipB
C HicA-HicB
C YafO-YafN
C Hha-TomB
C PspC-PspB
C CcdB-CcdA
C ParE-ParD
D E3U44_01105 type II toxin-antitoxin system ParD family antitoxin K07746 parD1_3_4; antitoxin ParD1/3/4
C Doc-Phd
C HigB-HigA
D E3U44_10825 plasmid maintenance system killer protein K07334 higB-1; toxin HigB-1
D E3U44_12945 hypothetical protein K07334 higB-1; toxin HigB-1
D E3U44_16980 peptidase K07334 higB-1; toxin HigB-1
D E3U44_04965 hypothetical protein K07334 higB-1; toxin HigB-1
D E3U44_05675 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1
D E3U44_18590 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1
D E3U44_10060 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D E3U44_09810 higA; addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D E3U44_10830 higA; addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D E3U44_15560 higA; addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D E3U44_16985 higA; addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D E3U44_17465 higA; addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D E3U44_04970 higA; addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D E3U44_05680 higA; addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D E3U44_18585 higA; addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
C MqsR-MqsA
C VapC-VapB
D E3U44_18680 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D E3U44_18685 antitoxin K18829 mvpT; antitoxin VapB
C PezT-PezA
C YobL-YobK
C YokI-YokJ
C YqcG-YqcF
C YxiD-YxxD
C FitB-FitA
D E3U44_00290 Arc family DNA-binding protein K21495 fitA; antitoxin FitA
C BC_0920-BC_0921
C Type II TA system related factors
D E3U44_01995 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D E3U44_01360 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D E3U44_09380 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D E3U44_09375 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D E3U44_04720 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
B Type III TA system
C AbiQ system
B Type IV TA system
C YeeV-YeeU
C CptA-CptB
D E3U44_00740 hypothetical protein K19168 cptA; toxin CptA
D E3U44_00745 succinate dehydrogenase assembly factor 2 K09159 cptB; antitoxin CptB
B Type V TA system
C GhoT-GhoS
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ADNA phosphothiolation system
B Sulfur modification proteins
C E3U44_13055 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
B DNA phosphorothioation-dependent restriction proteins
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023