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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Oryza brachyantha (malo sina)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        102715133 DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        102718250 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        102699893 DNA-directed RNA polymerases II, IV and V subunit 3-like	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        102703667 DNA-directed RNA polymerases II, IV and V subunit 11-like	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
E        102719972 DNA-directed RNA polymerases II, IV and V subunit 11-like	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        102702725 DNA-directed RNA polymerases IV and V subunit 4 isoform X1	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        102707185 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        102719957 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        102699477 DNA-directed RNA polymerases II, IV and V subunit 9A-like	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        102709479 DNA-directed RNA polymerases II, IV and V subunit 9A-like	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        102719722 DNA-directed RNA polymerases II, IV and V subunit 9B	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        102717295 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102715577 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102720008 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102701668 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102705798 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        102701837 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        102702107 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        102719924 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        102713947 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
E        102703806 DNA-directed RNA polymerase IV subunit 1-like	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        102716212 LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV subunit 1-like	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        102714612 DNA-directed RNA polymerase V subunit 1	K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] 
E        102702932 DNA-directed RNA polymerases IV and V subunit 2-like	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        102709953 DNA-directed RNA polymerases IV and V subunit 2-like	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        102700523 DNA-directed RNA polymerase V subunit 7-like	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
C    Basal transcription factors
D      TFIIA
E        102703682 transcription initiation factor IIA subunit 1-like	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        102710166 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
E        102713356 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        102723029 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        102713455 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        102717255 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        102716202 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        102705830 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        102699529 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        102706371 TATA-binding protein 2-like isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102704405 TATA-binding protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102717556 TATA-box-binding protein 2-like isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102713474 transcription initiation factor TFIID subunit 1 isoform X2	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        102701378 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        102716189 transcription initiation factor TFIID subunit 4b-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        102705897 transcription initiation factor TFIID subunit 4b-like isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        102711273 transcription initiation factor TFIID subunit 5-like isoform X2	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        102714927 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        102713775 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        102706793 transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        102716411 transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        102702448 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        102709164 transcription initiation factor TFIID subunit 8-like	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        102713257 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        102715331 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        102708287 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        102721599 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        102707913 transcription initiation factor TFIID subunit 12b isoform X2	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        102711745 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        102711824 general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        102708368 general transcription factor IIE subunit 2	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        102704364 transcription initiation factor IIF subunit alpha isoform X1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        102714415 transcription initiation factor IIF subunit beta isoform X1	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        102700145 general transcription factor IIF subunit 2-like	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        102713295 general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        102705432 general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        102716295 general transcription and DNA repair factor IIH subunit TFB4	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        102707868 general transcription and DNA repair factor IIH subunit TFB2 isoform X1	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        102716825 general transcription and DNA repair factor IIH helicase subunit XPB1-like	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        102714290 general transcription and DNA repair factor IIH helicase subunit XPD	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        102704982 cyclin-dependent kinase D-1	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        102717716 uncharacterized protein LOC102717716	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        102713407 uncharacterized protein LOC102713407 isoform X2	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        102706645 cyclin-H1-1 isoform X1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        102719969 mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        121053555 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        102706711 mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        121055325 mediator of RNA polymerase II transcription subunit 20a-like	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        102719804 mediator of RNA polymerase II transcription subunit 22a-like	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        102721643 mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
D      Middle
E        102722009 mediator of RNA polymerase II transcription subunit 7a-like	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        102719229 mediator of RNA polymerase II transcription subunit 10b-like	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        107304695 mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        102714128 mediator of RNA polymerase II transcription subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        102707147 mediator of RNA polymerase II transcription subunit 14-like	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        102701568 mediator of RNA polymerase II transcription subunit 14-like	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        102703065 cyclin-dependent kinase E-1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        102715973 cyclin-C1-1	K15161 CCNC; cyclin-C 
E        102703783 mediator of RNA polymerase II transcription subunit 13	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        102713451 mediator of RNA polymerase II transcription subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        102707150 mediator of RNA polymerase II transcription subunit 25	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        102720842 mediator of RNA polymerase II transcription subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        102700652 mediator of RNA polymerase II transcription subunit 32	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        102699975 mediator of RNA polymerase II transcription subunit 33A isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        102709861 mediator of RNA polymerase II transcription subunit 33A-like	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        102712297 LOW QUALITY PROTEIN: histone acetyltransferase GCN5	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        102709101 transcription-associated protein 1-like isoform X1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        102716673 transcriptional adapter ADA2	K11314 TADA2A; transcriptional adapter 2-alpha 
E        102701378 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        102716189 transcription initiation factor TFIID subunit 4b-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        102705897 transcription initiation factor TFIID subunit 4b-like isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        102711273 transcription initiation factor TFIID subunit 5-like isoform X2	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        102714927 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        102713775 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        102706793 transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        102716411 transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        102713257 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        102715331 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        102721599 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        102707913 transcription initiation factor TFIID subunit 12b isoform X2	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        121054439 SAGA-associated factor 11	K11363 SGF11; SAGA-associated factor 11 
E        102722817 SAGA-associated factor 29 homolog A-like isoform X1	K11364 SGF29; SAGA-associated factor 29 
E        102720343 protein CHROMATIN REMODELING 5 isoform X1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        102705678 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        102708988 ubiquitin C-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        102700027 spliceosome-associated protein 130 A-like	K12830 SF3B3; splicing factor 3B subunit 3 
E        102720724 DNA damage-binding protein 1	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        102702914 ATP-dependent helicase BRM	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        102707678 chromatin structure-remodeling complex protein BSH	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        102718709 SWI/SNF complex subunit SWI3B isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        102719092 LOW QUALITY PROTEIN: SWI/SNF complex subunit SWI3D-like	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        102714089 SWI/SNF complex subunit SWI3D-like isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        102701534 SWI/SNF complex subunit SWI3A	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        102701590 SWI/SNF complex subunit SWI3C isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        102719346 SWI/SNF complex subunit SWI3C-like	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        102713625 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        102708639 actin-related protein 4	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
E        102707678 chromatin structure-remodeling complex protein BSH	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        102702795 RNA polymerase II transcriptional coactivator KELP	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        102714150 RNA polymerase II transcriptional coactivator KIWI-like	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        102716141 protein SHORT ROOT IN SALT MEDIUM 1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        102719501 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        102706268 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        102718191 transcription elongation factor SPT4 homolog 2-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        102712450 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        102713273 transcription elongation factor SPT6 homolog isoform X2	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        102714952 uncharacterized protein LOC102714952	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        102714667 polyadenylation and cleavage factor homolog 4-like	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        102721072 probable cleavage and polyadenylation specificity factor subunit 1 isoform X2	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        102719189 cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        102710602 zinc finger CCCH domain-containing protein 45	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        102715618 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        102699376 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        102705703 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        102713468 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        102703235 serine/threonine-protein phosphatase PP1 isozyme 3-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        102714049 uncharacterized protein LOC102714049 isoform X2	K06100 SYMPK; symplekin 
E        102701841 symplekin	K06100 SYMPK; symplekin 
E        102717015 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        102714242 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        102710165 5'-3' exoribonuclease 3 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        102704706 NAD-capped RNA hydrolase DXO1	K14845 RAI1; RAT1-interacting protein 
E        102710744 regulation of nuclear pre-mRNA domain-containing protein 1A-like isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        102703490 regulation of nuclear pre-mRNA domain-containing protein 1A-like isoform X2	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        102719625 actin cytoskeleton-regulatory complex protein pan1-like	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        102709979 actin cytoskeleton-regulatory complex protein pan1-like	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        121053545 disease resistance protein RPP13-like	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        102712572 uncharacterized ATP-dependent helicase C29A10.10c-like	K10706 SETX; senataxin [EC:5.6.2.-] 
E        102722671 peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
E        102721361 peptidyl-prolyl cis-trans isomerase Pin1-like	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        102717085 protein PAF1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        102704687 protein CDC73 homolog	K15175 CDC73; parafibromin 
E        102701888 protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        102701803 protein LEO1 homolog	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        102717909 protein LEO1 homolog	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        102719546 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        102713219 ell-associated factor Eaf	K15186 EAF; ELL-associated factor 
E        102721617 cyclin-T1-1-like	K15188 CCNT; cyclin T 
E        102722927 cyclin-T1-2-like	K15188 CCNT; cyclin T 
E        102719913 cyclin-T1-4	K15188 CCNT; cyclin T 
E        102699994 cyclin-T1-3	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        102721617 cyclin-T1-1-like	K15188 CCNT; cyclin T 
E        102722927 cyclin-T1-2-like	K15188 CCNT; cyclin T 
E        102719913 cyclin-T1-4	K15188 CCNT; cyclin T 
E        102699994 cyclin-T1-3	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        102716525 probable RNA methyltransferase At5g51130	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        102716371 la-related protein 6A	K15191 LARP7; La-related protein 7 
E        102719286 la-related protein 6C-like isoform X1	K15191 LARP7; La-related protein 7 
E        102707788 la-related protein 6C-like isoform X1	K15191 LARP7; La-related protein 7 
E        102710935 la-related protein 6B-like	K15191 LARP7; La-related protein 7 
E        102710342 la-related protein 6B-like	K15191 LARP7; La-related protein 7 
E        102718202 la-related protein 6B-like	K15191 LARP7; La-related protein 7 
E        102721617 cyclin-T1-1-like	K15188 CCNT; cyclin T 
E        102722927 cyclin-T1-2-like	K15188 CCNT; cyclin T 
E        102719913 cyclin-T1-4	K15188 CCNT; cyclin T 
E        102699994 cyclin-T1-3	K15188 CCNT; cyclin T 
D      DBIRD complex
D      Others
E        102718335 TATA-binding protein-associated factor BTAF1 isoform X1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        102705098 protein Dr1 homolog	K21751 DR1; down-regulator of transcription 1 
E        102712536 dr1-associated corepressor-like isoform X1	K21752 DRAP1; Dr1-associated corepressor 
E        102708657 dr1-associated corepressor-like	K21752 DRAP1; Dr1-associated corepressor 
E        102710671 histone H3.v1-like	K15193 SPTY2D1; protein SPT2 
E        102722360 mediator of RNA polymerase II transcription subunit 15-like	K15193 SPTY2D1; protein SPT2 
E        102705133 RNA polymerase II C-terminal domain phosphatase-like 1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        102719265 RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        102722903 RNA polymerase II C-terminal domain phosphatase-like 3	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        102708133 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        102715940 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        102706436 CTD small phosphatase-like protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        102716321 CTD nuclear envelope phosphatase 1 homolog isoform X2	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        102715426 protein IWS1 homolog 1	K17498 SPN1; transcription factor SPN1 
E        102721745 transcriptional elongation regulator MINIYO	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        102707675 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        102702941 RNA polymerase II-associated protein 3	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        102718977 agamous-like MADS-box protein AGL61	K12412 MCM1; pheromone receptor transcription factor 
E        102714631 GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        102705331 GPN-loop GTPase QQT2	K24104 GPN; GPN-loop GTPase 
E        102715542 GPN-loop GTPase QQT1	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        102718648 DNA-directed RNA polymerase III subunit 1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        102713002 DNA-directed RNA polymerase III subunit 2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        102710493 DNA-directed RNA polymerases I and III subunit rpac1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        102701958 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        102706699 uncharacterized protein LOC102706699 isoform X1	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        102713731 DNA-directed RNA polymerase III subunit rpc4	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        102702776 DNA-directed RNA polymerase III subunit RPC5 isoform X1	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        102713091 DNA-directed RNA polymerase III subunit rpc6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        102705549 glutamic acid-rich protein-like	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        102706113 DNA-directed RNA polymerase III subunit RPC8	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        102720933 uncharacterized protein LOC102720933	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        102708687 DNA-directed RNA polymerase III subunit RPC10-like	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        102717295 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102715577 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102720008 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102701668 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102705798 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        102701837 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        102702107 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        102719924 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        102713947 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        102706070 transcription factor IIIA-like	K09191 GTF3A; general transcription factor IIIA 
E        102716150 transcription factor IIIA-like	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        102706371 TATA-binding protein 2-like isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102704405 TATA-binding protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102717556 TATA-box-binding protein 2-like isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102706751 transcription factor IIIB 60 kDa subunit-like isoform X2	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        102708679 uncharacterized protein LOC102708679	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        102699931 uncharacterized protein LOC102699931	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        102720109 uncharacterized protein LOC102720109	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        102715986 general transcription factor 3C polypeptide 3 isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        102721685 general transcription factor 3C polypeptide 5-like isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        102718449 uncharacterized protein LOC102718449	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        102721685 general transcription factor 3C polypeptide 5-like isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        102715986 general transcription factor 3C polypeptide 3 isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        102708649 uncharacterized protein LOC102708649 isoform X1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        102720192 snRNA-activating protein complex subunit isoform X1	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        102699775 repressor of RNA polymerase III transcription MAF1 homolog	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        102721283 DNA-directed RNA polymerase I subunit 1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        102710621 DNA-directed RNA polymerase I subunit 2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        102710493 DNA-directed RNA polymerases I and III subunit rpac1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        102701958 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        102700659 DNA-directed RNA polymerase I subunit rpa49	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        102716273 uncharacterized protein LOC102716273	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        102712238 DNA-directed RNA polymerase I subunit RPA12-like	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        102717295 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102715577 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102720008 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102701668 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        102705798 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        102701837 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        102702107 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        102719924 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        102713947 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        102706371 TATA-binding protein 2-like isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102704405 TATA-binding protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        102717556 TATA-box-binding protein 2-like isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
E        102703098 high mobility group B protein 13-like	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        102719304 RNA polymerase I-specific transcription initiation factor RRN3 isoform X1	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        102710388 upstream activation factor subunit spp27-like	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        102718191 transcription elongation factor SPT4 homolog 2-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        102712450 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        102715482 probable chromatin-remodeling complex ATPase chain	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        102704109 probable chromatin-remodeling complex ATPase chain	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
E        33018079 rpoA; RNA polymerase alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        33018013 rpoB; RNA polymerase beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
E        33018014 rpoC1; RNA polymerase beta' subunit-1	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        33018015 rpoC2; RNA polymerase beta' subunit-2	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
D      Sigma factors
E        102701287 RNA polymerase sigma factor sigA	K03086 rpoD; RNA polymerase primary sigma factor 
E        107304219 RNA polymerase sigma factor sigC	K03093 sigI; RNA polymerase sigma-I factor 
E        102701176 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial	K03093 sigI; RNA polymerase sigma-I factor 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        102723029 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        102713455 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        102717255 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        102716202 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        102705830 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        102699529 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        102711824 general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
#<hr>
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#Last updated: April 9, 2024