+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Ochrobactrum quorumnocens

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D CES85_0697 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C CES85_0698 era; GTP-binding protein Era K03595 era; GTPase C CES85_2238 cgtA; obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C CES85_1155 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor C CES85_2720 putative transcription elongation K02600 nusA; transcription termination/antitermination protein NusA C CES85_0805 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB C CES85_1390 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG C CES85_1664 transcription termination factor nusG family protein K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D CES85_0718 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D CES85_4792 fmu domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D CES85_2202 methyltransferase domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D CES85_2728 methyltransferase small domain protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D CES85_4813 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D CES85_4855 RNA methyltransferase, RsmE family protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D CES85_2578 gidB; 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CES85_1577 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D CES85_0192 tetrapyrrole (Corrin/Porphyrin) Methylases family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D CES85_2252 SAM-dependent methyltransferase family protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D CES85_0488 hemolysin TlyA family protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D CES85_1397 RNA 2'-O ribose methyltransferase substrate binding family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D CES85_4104 ftsJ-like methyltransferase family protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D CES85_2232 putative SPOUT methyltransferase family protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D CES85_0166 SAM dependent methyltransferase domain protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D CES85_0743 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D CES85_0088 rlmN; 23S rRNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D CES85_0488 hemolysin TlyA family protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D CES85_0489 methyltransferase small domain protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D CES85_2251 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CES85_4814 pseudouridine synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D CES85_1116 pseudouridine synthase, RluA family protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D CES85_2058 pseudouridine synthase, RluA family protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C CES85_2708 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C CES85_3928 acetyltransferase domain protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C CES85_0551 acetyltransferase family protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C CES85_2502 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C CES85_1553 methyltransferase domain protein K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C CES85_0697 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C CES85_0984 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C CES85_3922 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C CES85_0139 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C CES85_0698 era; GTP-binding protein Era K03595 era; GTPase C CES85_0420 engA; ribosome-associated GTPase EngA K03977 engA; GTPase C CES85_2238 cgtA; obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] C CES85_1245 hflX; GTP-binding protein HflX K03665 hflX; GTPase B Other maturation factors C CES85_0454 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C CES85_0687 rsh; GTP pyrophosphokinase rsh K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C CES85_2724 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C CES85_2719 hypothetical protein K09748 rimP; ribosome maturation factor RimP C CES85_2233 hypothetical protein K09710 ybeB; ribosome-associated protein C CES85_2712 putative rRNA maturation factor YbeY K07042 ybeY; probable rRNA maturation factor C CES85_0174 raiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor C CES85_1766 GTP-binding protein K06942 ychF; ribosome-binding ATPase # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024