+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Oryzias latipes (Japanese medaka)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 101173558 rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 101173353 rngtt; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 101155202 cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 101158070 cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 101158006 cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 101156959 fam103a1; RNMT-activating mini protein K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 101171258 ncbp1; nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 101159496 ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 101165463 nudt21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 101164290 cpsf7; cleavage and polyadenylation specificity factor subunit 7 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 101163450 cpsf6; cleavage and polyadenylation specificity factor subunit 6 isoform X2 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 101158455 clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 101164244 pcf11; pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 101172177 cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 101164198 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 101164375 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 101173062 cpsf4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 101159890 pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 101160971 fip1l1; pre-mRNA 3'-end-processing factor FIP1 isoform X3 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 101171438 wdr33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 101173843 WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 110015105 wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 101161814 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 101171445 serine/threonine-protein phosphatase alpha-2 isoform K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 101158483 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 101155811 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 101169945 serine/threonine-protein phosphatase alpha-2 isoform-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 101170572 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 101173931 cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 101163985 cstf2; cleavage stimulation factor subunit 2 isoform X2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 101162671 cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 101158983 sympk; symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 101173217 small nuclear ribonucleoprotein-associated protein B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 101173956 snrpd3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 101173384 snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 101170138 snrpf; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 101154947 snrpg; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 101164414 lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 101162535 lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 101164198 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 101164375 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 101163985 cstf2; cleavage stimulation factor subunit 2 isoform X2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 101158983 sympk; symplekin K06100 SYMPK; symplekin
E 101155501 slbp; histone RNA hairpin-binding protein isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 101168727 uncharacterized protein LOC101168727 isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 101161361 casp8ap2; CASP8-associated protein 2 isoform X1 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 101165335 supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 101170287 supt5h; transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 101169238 mettl3; N6-adenosine-methyltransferase catalytic subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 101170004 mettl14; N6-adenosine-methyltransferase non-catalytic subunit isoform X1 K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 101158563 mettl4; methyltransferase-like protein 4 isoform X1 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 101169471 mettl16; U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase isoform X2 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 101154997 wtap; pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 101168735 virma; protein virilizer homolog isoform X1 K22910 VIRMA; protein virilizer
E 101159584 rbm15; putative RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 101172726 rbm15b; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 101162819 zinc finger CCCH domain-containing protein 13 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 105357056 cbll1; E3 ubiquitin-protein ligase Hakai K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 101157478 papolg; poly(A) polymerase gamma isoform X2 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 101155937 papd4; poly(A) RNA polymerase GLD2 isoform X2 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 101173262 tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 101165605 bard1; BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 101156877 rbm26; RNA-binding protein 26 isoform X2 K13192 RBM26; RNA-binding protein 26
E 101162356 fto; alpha-ketoglutarate-dependent dioxygenase FTO K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 101168432 alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 101167445 TAR DNA-binding protein 43-like isoform X2 K23600 TARDBP; TAR DNA-binding protein 43
E 101173545 tardbp; TAR DNA-binding protein 43 isoform X2 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 101155706 dhx40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 101174387 kin; DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 101159626 mettl8; methyltransferase-like protein 8 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 101159170 mettl22; methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 101173494 fam46b; putative nucleotidyltransferase FAM46B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 101158475 fam46a; putative nucleotidyltransferase FAM46A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 101158158 putative nucleotidyltransferase FAM46A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 101162488 fam46c; putative nucleotidyltransferase FAM46C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 101155562 zc3h14; zinc finger CCCH domain-containing protein 14 isoform X3 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 101166978 srrt; serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 100049229 rbm8a; RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E 101167611 protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 101175372 THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 101161973 THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 101159793 eif4a3; eukaryotic initiation factor 4A-III isoform X2 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 101171903 ccdc174; coiled-coil domain-containing protein 174 isoform X2 K25178 CCDC174; coiled-coil domain-containing protein 174
E 111947722 casc3; protein CASC3 isoform X1 K14323 CASC3; protein CASC3
E 101165955 sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 101157901 pnn; pinin K13114 PNN; pinin
E 111949076 acin1; apoptotic chromatin condensation inducer in the nucleus isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 101170959 apoptotic chromatin condensation inducer in the nucleus K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 101174024 rnps1; RNA-binding protein with serine-rich domain 1 isoform X2 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 101163290 srrm1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 101157731 thoc1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 101169227 thoc2; THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 101175627 thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 101175372 THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 101161973 THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 101174434 thoc5; THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 101174081 thoc6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 101164639 thoc7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 101155259 pcid2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 101173720 transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 101171315 eny2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 101170769 caltractin isoform X2 K10840 CETN2; centrin-2
E 101165824 cetn3; centrin-3 K16466 CETN3; centrin-3
E 101157016 mcm3ap; germinal-center associated nuclear protein isoform X1 K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 101165590 nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR
E 101172151 tpr; nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR
E 101160646 rae1; mRNA export factor isoform X2 K14298 RAE1; mRNA export factor
E 101160872 sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 101168416 nup37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 101168712 nup85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 101173187 nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 101165219 nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 101175095 nup54; nucleoporin p54 isoform X2 K14308 NUP54; nuclear pore complex protein Nup54
E 101161522 nup62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 101167811 nup88; nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88
E 101173220 nup93; nuclear pore complex protein Nup93 isoform X1 K14309 NUP93; nuclear pore complex protein Nup93
E 101172463 nup98; nuclear pore complex protein Nup98-Nup96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 101174876 nup107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 101160289 nup133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 101158960 nup188; nucleoporin NUP188 homolog isoform X1 K14311 NUP188; nuclear pore complex protein Nup188
E 101161421 nup153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 101163262 nup155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 101159173 nup160; nuclear pore complex protein Nup160 isoform X1 K14303 NUP160; nuclear pore complex protein Nup160
E 101158733 nup35; nucleoporin NUP53 K14313 NUP35; nuclear pore complex protein Nup53
E 101160977 nup205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 101172656 nup210; nuclear pore membrane glycoprotein 210 isoform X1 K14314 NUP210; nuclear pore complex protein Nup210
E 101170858 nup214; nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 101163268 nuclear envelope pore membrane protein POM 121 K14316 POM121; nuclear pore complex protein Nup121
E 101165014 nup58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 101163502 nupl2; nucleoporin-like protein 2 K14321 NUPL2; nucleoporin-like protein 2
E 101169920 ndc1; nucleoporin NDC1 isoform X3 K14315 NDC1; nucleoporin NDC1
E 101167897 seh1l; nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 101160447 RANBP2-like and GRIP domain-containing protein 8 isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 101165680 sentrin-specific protease 2 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 101159586 aaas; aladin isoform X2 K14320 AAAS; aladin
E 101165824 cetn3; centrin-3 K16466 CETN3; centrin-3
E 101163645 gle1; nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1
E 101172252 nxf1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 101172743 nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 101156259 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 101167939 anp32a; acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 101156393 acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 101175218 anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 101172398 ELAV-like protein 1 isoform X2 K13088 ELAVL1; ELAV-like protein 1
E 101170313 ELAV-like protein 1 isoform X2 K13088 ELAVL1; ELAV-like protein 1
E 101155436 elavl3; ELAV-like protein 3 isoform X11 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 101165347 elavl2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 101162996 elavl4; ELAV-like protein 4 isoform X3 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 101159831 faf2; FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 101174924 vcp; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 101160031 vcpkmt; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 101175463 transportin-2 K18727 TNPO2; transportin-2
E 101170763 transportin-2-like isoform X1 K18727 TNPO2; transportin-2
E 101175126 exportin-1 K14290 XPO1; exportin-1
E 101170539 exportin-1 isoform X1 K14290 XPO1; exportin-1
E 101158920 xpo7; exportin-7 isoform X1 K18460 XPO7; exportin-7
E 101170844 rangap1; ran GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 101160693 ran GTPase-activating protein 1-like K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 101167151 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 100049330 eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 101169085 eukaryotic translation initiation factor 4E isoform X4 K03259 EIF4E; translation initiation factor 4E
E 101166761 eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 101155548 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 101167901 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 105354159 eif4g3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 101158873 eif4g1; eukaryotic translation initiation factor 4 gamma 1 K03260 EIF4G; translation initiation factor 4G
E 101156233 eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 101158558 eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 101163400 eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 101166297 eif4b; eukaryotic translation initiation factor 4B isoform X4 K03258 EIF4B; translation initiation factor 4B
E 101167018 eif4h; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 101162296 eif4ebp1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 101165490 eukaryotic translation initiation factor 4E-binding protein 2 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 111948733 eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 101166144 eif4ebp3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 100169849 eif4enif1; eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 101168336 angel1; protein angel homolog 1 isoform X1 K18729 ANGEL; protein angel
E 111947098 protein angel homolog 2-like isoform X1 K18729 ANGEL; protein angel
E 101156831 fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 101162746 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 101154983 fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 101169438 cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 101164818 cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 101167417 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 101160700 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 101160327 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101157316 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101169847 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101172999 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100049325 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101161371 ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 101158982 ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 101159468 gigyf1; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 101162074 gigyf2; GRB10-interacting GYF protein 2 isoform X2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 101169122 polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 101159058 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 101163762 pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 101167536 embryonic polyadenylate-binding protein isoform X1 K13126 PABPC; polyadenylate-binding protein
E 101167623 paip1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 101171896 paip2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 101173895 paip2b; polyadenylate-binding protein-interacting protein 2B isoform X2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 101154960 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 101173370 deaf1; deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 101161648 mcts1; malignant T-cell-amplified sequence 1 isoform X2 K07575 MCTS; malignant T-cell-amplified sequence
E 101169300 denr; density-regulated protein isoform X2 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 101160767 a1cf; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 101173466 pym1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 101174914 heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101164602 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 isoform X2 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101166783 dazap1; DAZ-associated protein 1 isoform X3 K14411 MSI; RNA-binding protein Musashi
E 101154771 RNA-binding protein Musashi homolog 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 101173434 msi1; RNA-binding protein Musashi homolog 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 101163923 msi2; RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 101164692 hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 101171202 pelo; protein pelota homolog K06965 PELO; protein pelota
E 101170990 pabpn1l; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 101157012 pabpn1; polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 101158109 ATP-dependent RNA helicase DDX19A isoform X1 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 101163319 ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 101157537 xab2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 101168041 sarnp; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 101159637 rcc1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 101166706 la-related protein 6-like K18733 LARP6; la-related protein 6
E 101168493 la-related protein 6 K18733 LARP6; la-related protein 6
E 101168390 transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 101161901 transcriptional activator protein Pur-alpha-like K21772 PURA; transcriptional activator protein Pur-alpha
E 101164417 purb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 101169999 transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 101156823 poldip3; polymerase delta-interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 101161392 zc3h11a; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 101162239 leng8; leukocyte receptor cluster member 8 K23802 LENG8; SAC3 family protein LENG8/THP3
E 101174467 protein PAT1 homolog 2 isoform X1 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 101172342 etf1; eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 101175535 eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 101166665 gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 101168695 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 101175361 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 101159680 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 101167578 regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 101173325 ppp2ca; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 101157601 ppp2cb; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 101167061 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 101160490 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform isoform X2 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 101167679 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 101170296 ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 101167467 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 101157461 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 101161318 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 101168662 ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 101155892 ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X3 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 101157896 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 101173107 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 101169633 ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 101172117 ppp2r5c; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X3 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 101167918 ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 101169753 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X2 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 101172687 ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 101156392 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 101173007 smg5; protein SMG5 K11125 SMG5; protein SMG5
E 101166408 smg6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 101155720 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 101162064 smg8; protein SMG8 K18734 SMG8; protein SMG8
E 101171691 smg9; protein SMG9 isoform X1 K18735 SMG9; protein SMG9
E 101159468 gigyf1; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 101162074 gigyf2; GRB10-interacting GYF protein 2 isoform X2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 101171671 secisbp2; selenocysteine insertion sequence-binding protein 2 isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 101171149 secisbp2l; selenocysteine insertion sequence-binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 101168309 dhx34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 101172981 gtpbp1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 101157794 pum3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 101173462 unconventional myosin-Va K10357 MYO5; myosin V
E 101165221 unconventional myosin-Vb isoform X2 K10357 MYO5; myosin V
E 101171723 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 101162444 myo5c; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 101168277 myo5a; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 101156054 protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 101161483 protein bicaudal D homolog 1 isoform X2 K18739 BICD; protein bicaudal D
E 101162517 protein bicaudal D homolog 2 K18739 BICD; protein bicaudal D
E 101169205 protein bicaudal D homolog 2 K18739 BICD; protein bicaudal D
E 101171665 protein bicaudal D homolog 2 isoform X2 K18739 BICD; protein bicaudal D
E 101167663 exd1; piRNA biogenesis protein EXD1 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 101168921 actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 100049433 actb; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 101159204 myelin basic protein isoform X4 K17269 MBP; myelin basic protein
E 101173447 myelin basic protein-like isoform X2 K17269 MBP; myelin basic protein
E 101174169 mbp; myelin basic protein K17269 MBP; myelin basic protein
E 101163931 vim; vimentin K07606 VIM; vimentin
E 105354075 desmin K07606 VIM; vimentin
E 100049397 metallothionein K14739 MT1_2; metallothionein 1/2
E 101164933 myc; myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein
E 101171524 c-myc17; uncharacterized protein LOC101171524 K04377 MYC; Myc proto-oncogene protein
E 101163256 T-box-containing protein TBX6L K10180 TBX6; T-box protein 6
E 101155945 T-box-containing protein TBX6L-like isoform X1 K10180 TBX6; T-box protein 6
E 101155468 T-box transcription factor TBX6-like K10180 TBX6; T-box protein 6
E 100144352 nanos1a; nanos1 K18741 NANOS1; protein nanos 1
E 100301601 nanos2; nanos2 protein K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 101174037 far upstream element-binding protein 3 K13210 FUBP; far upstream element-binding protein
E 101169420 khsrp; far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein
E 101169884 fubp1; far upstream element-binding protein 1 isoform X4 K13210 FUBP; far upstream element-binding protein
E 101173152 far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein
E 101170939 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 100049188 eef1a; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 100049338 42Sp50 K03231 EEF1A; elongation factor 1-alpha
E 101166076 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 101155525 eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 111948168 hax1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 101155131 agfg1; arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 101158304 arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 101162788 arf-GAP domain and FG repeat-containing protein 2 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 101169247 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 101156590 igf2bp3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X4 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 101165926 ptbp1; polypyrimidine tract-binding protein 1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 101170752 ptbp1b; polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 101160327 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101157316 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101169847 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101172999 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100049325 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 101156831 fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 101162746 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 101154983 fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 101169438 cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 101164818 cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 101160803 pcbp2; poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 101159823 poly(rC)-binding protein 2-like isoform X2 K13162 PCBP2; poly(rC)-binding protein 2
E 101159528 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 101167429 poly(rC)-binding protein 3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 101172970 poly(rC)-binding protein 4-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 101158397 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 101165305 poly(rC)-binding protein 4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 101158019 caprin1; caprin-1 isoform X3 K18743 CAPRIN1; caprin-1
E 101165381 caprin-1 isoform X1 K18743 CAPRIN1; caprin-1
E 101161935 caprin2; caprin-2 isoform X1 K18744 CAPRIN2; caprin-2
E 100049221 ybx1; nuclease-sensitive element-binding protein 1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 101169885 xrn1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 101167465 protein argonaute-4 isoform X2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 101156100 protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 101165653 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 101169483 protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 101157320 protein argonaute-3 isoform X2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 101167151 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 100049330 eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 101169085 eukaryotic translation initiation factor 4E isoform X4 K03259 EIF4E; translation initiation factor 4E
E 101166761 eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 101168695 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 101161371 ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 101158982 ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 101166148 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 101169303 ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 101170521 RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 111948930 mex3a; LOW QUALITY PROTEIN: RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 101171527 mex3d; RNA-binding protein MEX3D K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 105358857 RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 111949112 fastk; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 101155509 protein LSM14 homolog B-B K18749 LSM14; protein LSM14
E 101155350 protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14
E 101158683 lsm14a; protein LSM14 homolog A K18749 LSM14; protein LSM14
E 101160803 pcbp2; poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 101159823 poly(rC)-binding protein 2-like isoform X2 K13162 PCBP2; poly(rC)-binding protein 2
E 100049221 ybx1; nuclease-sensitive element-binding protein 1 K09276 YBX1; Y-box-binding protein 1
E 100529186 ajuba; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 101175430 limd1; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 101158185 wtip; Wilms tumor protein 1-interacting protein isoform X1 K16682 AJUBA; LIM domain-containing protein
E 101175158 mov10; putative helicase MOV-10 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 101175667 putative helicase mov-10-B.2 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 101155056 pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 101157470 tnpo1; transportin-1 K18752 TNPO1; transportin-1
E 101156392 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 101173007 smg5; protein SMG5 K11125 SMG5; protein SMG5
E 101166408 smg6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 101155720 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 110016569 zfp36l2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 101172695 zfp36l1; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 101173238 mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 101160951 lin28b; protein lin-28 homolog B isoform X1 K18754 LIN28; protein lin-28
E 101169811 protein lin-28 homolog A isoform X2 K18754 LIN28; protein lin-28
E 101174004 htt; huntingtin isoform X1 K04533 HD; huntingtin
E 101161689 ipo8; importin-8 isoform X1 K18755 IPO8; importin-8
E 101165583 bicc1; protein bicaudal C homolog 1 K18756 BICC1; protein bicaudal C
E 101172590 protein bicaudal C homolog 1-B isoform X1 K18756 BICC1; protein bicaudal C
E 101174914 heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101164602 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 isoform X2 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101160964 cAMP-dependent protein kinase catalytic subunit alpha isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 101163742 cAMP-dependent protein kinase catalytic subunit alpha isoform X3 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 101170876 cAMP-dependent protein kinase catalytic subunit beta isoform X2 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 101160305 prkacb; cAMP-dependent protein kinase catalytic subunit beta isoform X3 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 101161076 larp1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 101164766 la-related protein 1B isoform X1 K18757 LARP1; la-related protein 1
E 101160663 atxn2; ataxin-2 isoform X1 K23625 ATXN2_2L; ataxin 2/2L
E 101175201 ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 101159655 dcp2; m7GpppN-mRNA hydrolase isoform X2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 101172080 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 101173273 dcp1b; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 101156502 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 101162034 lsm2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 101175071 lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 101168448 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 101173342 lsm5; U6 snRNA-associated Sm-like protein LSm5 isoform X1 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 101156227 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 101175386 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 101159787 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 101163426 kinesin light chain 1 K10407 KLC; kinesin light chain
E 101159385 klc2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 101171520 kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 101163537 klc1; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 101173462 unconventional myosin-Va K10357 MYO5; myosin V
E 101165221 unconventional myosin-Vb isoform X2 K10357 MYO5; myosin V
E 101171723 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 101162444 myo5c; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 101168277 myo5a; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 101166777 tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 101159587 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 101160296 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 101175403 tubulin alpha-1B chain isoform X1 K07374 TUBA; tubulin alpha
E 105354455 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 101171518 tubulin alpha chain K07374 TUBA; tubulin alpha
E 101155224 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 101168001 tubulin alpha chain K07374 TUBA; tubulin alpha
E 101168255 tubulin alpha chain K07374 TUBA; tubulin alpha
E 101155351 tubulin alpha-8 chain K07374 TUBA; tubulin alpha
E 101167538 tubulin alpha-1B chain-like isoform X1 K07374 TUBA; tubulin alpha
E 101166346 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 101168810 tubulin alpha chain K07374 TUBA; tubulin alpha
E 101160327 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101157316 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101169847 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101172999 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100049325 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101167417 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 101160700 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 101171336 trinucleotide repeat-containing gene 6B protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 101161975 tnrc6a; trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 101163614 trinucleotide repeat-containing gene 6B protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 101157348 trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 101165557 trinucleotide repeat-containing gene 6C protein isoform X3 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 101156649 cnot1; CCR4-NOT transcription complex subunit 1 isoform X3 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 101162525 CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 101170887 CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 101168303 CCR4-NOT transcription complex subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 101161264 cnot3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 101173388 cnot4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 101166103 cnot6l; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 101160421 CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 101165240 CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 101160578 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 100170629 uncharacterized protein KIAA0355 homolog K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 101169734 dis3l2; DIS3-like exonuclease 2 isoform X1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 101157055 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 101173181 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 101171994 tob1; protein Tob1 K14443 TOB; protein Tob/BTG
E 101175185 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 101173496 protein BTG3 K14443 TOB; protein Tob/BTG
E 101175551 protein Tob1 K14443 TOB; protein Tob/BTG
E 101169611 tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 101158966 maternal B9.10 protein K14443 TOB; protein Tob/BTG
E 101169651 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 100169849 eif4enif1; eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 101169509 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 101167942 enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 101169936 enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 101174262 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 100144282 nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 101175361 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 101159680 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 101167578 regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 101163053 zinc-binding protein A33-like K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 101172603 E3 ubiquitin-protein ligase TRIM21-like isoform X1 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 101156749 trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 101162220 polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 100144382 interferon-induced, double-stranded RNA-activated protein kinase isoform X1 K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 110016550 interferon-induced, double-stranded RNA-activated protein kinase-like isoform X1 K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 101165909 zar1l; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 101175633 zar1; zygote arrest protein 1 isoform X1 K18762 ZAR1; zygote arrest protein 1
E 101158487 ythdf3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 101163288 ythdf2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 101163899 YTH domain-containing family protein 1-like K20102 YTHDF; YTH domain-containing family protein
E 101169361 YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 101158614 nucleolysin TIA-1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 101155125 nucleolysin TIA-1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 101155294 tial1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 101169122 polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 101159058 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 101163762 pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 101167536 embryonic polyadenylate-binding protein isoform X1 K13126 PABPC; polyadenylate-binding protein
E 101169247 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 101156831 fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 101162746 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 101154983 fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 101172398 ELAV-like protein 1 isoform X2 K13088 ELAVL1; ELAV-like protein 1
E 101170313 ELAV-like protein 1 isoform X2 K13088 ELAVL1; ELAV-like protein 1
E 101174841 g3bp1; ras GTPase-activating protein-binding protein 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 101170902 g3bp2; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 101166446 eif3b; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 101155548 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 101167901 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 101159793 eif4a3; eukaryotic initiation factor 4A-III isoform X2 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 101166297 eif4b; eukaryotic translation initiation factor 4B isoform X4 K03258 EIF4B; translation initiation factor 4B
E 105354159 eif4g3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 101158873 eif4g1; eukaryotic translation initiation factor 4 gamma 1 K03260 EIF4G; translation initiation factor 4G
E 101156233 eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 101158558 eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 101163400 eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 101168378 rps6ka6; ribosomal protein S6 kinase alpha-6 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 101169648 ribosomal protein S6 kinase alpha-1 isoform X2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 101163402 ribosomal protein S6 kinase alpha-2-like isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 101165012 ribosomal protein S6 kinase alpha-3 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 101162055 rack1; receptor of activated protein C kinase 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 101159764 traf2; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 101155367 TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 101167626 TNF receptor-associated factor 2 isoform X2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 101172252 nxf1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 101163380 hdac6; histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 101155265 tdrd3; tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3
E 101156436 larp4b; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
E 101161708 la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 101164262 la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
E 101167789 larp4; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 101172080 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 101173273 dcp1b; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 101159655 dcp2; m7GpppN-mRNA hydrolase isoform X2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 101166148 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 101169303 ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 101167942 enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 101169936 enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 101174262 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 101169509 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 101156502 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 101162034 lsm2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 101175071 lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 101168448 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 101173342 lsm5; U6 snRNA-associated Sm-like protein LSm5 isoform X1 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 101156227 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 101175386 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 101159787 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 101169885 xrn1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 101163131 xrn2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 101171079 U8 snoRNA-decapping enzyme-like K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 101158538 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 101160963 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 101169338 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 101162770 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 101170911 exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 101170622 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 101161262 exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 101155271 exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 101160328 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 101168140 exosc8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 101156627 exosc9; exosome complex component RRP45 isoform X1 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 101166822 dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 101159171 dis3l; DIS3-like exonuclease 1 isoform X1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 101172813 exosc10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 101167066 c1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 101173700 mphosph6; M-phase phosphoprotein 6 isoform X1 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 101162261 papd7; non-canonical poly(A) RNA polymerase PAPD7 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 101163355 non-canonical poly(A) RNA polymerase PAPD7 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 101157441 papd5; non-canonical poly(A) RNA polymerase PAPD5 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 101170154 zcchc7; zinc finger CCHC domain-containing protein 7 isoform X1 K12597 AIR1_2; protein AIR1/2
E 105354880 zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 100304468 mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 101154960 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 101169615 ttc37; tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3
E 101172406 wdr61; WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 101166103 cnot6l; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 101160421 CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 101156649 cnot1; CCR4-NOT transcription complex subunit 1 isoform X3 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 101162525 CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 101170887 CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 101168303 CCR4-NOT transcription complex subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 101161264 cnot3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 101173388 cnot4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 101165240 CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 101160578 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 100049470 cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 101170457 cnot10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 101157055 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 101173181 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 101157188 parn; poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 101175497 dhx36; ATP-dependent RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 101171994 tob1; protein Tob1 K14443 TOB; protein Tob/BTG
E 101175185 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 101173496 protein BTG3 K14443 TOB; protein Tob/BTG
E 101175551 protein Tob1 K14443 TOB; protein Tob/BTG
E 101169611 tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 101158966 maternal B9.10 protein K14443 TOB; protein Tob/BTG
E 101169651 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 101157593 noct; nocturnin isoform X3 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 101171297 eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 101155256 eri2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 101158538 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 101162595 pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 101172897 ireb2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 101160963 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 101162116 helz2; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 101159398 nrde2; protein NRDE2 homolog isoform X1 K26109 NRDE2; nuclear exosome regulator NRDE2
E 101168173 samd4a; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 101165827 samd4b; protein Smaug homolog 2 K27396 SMG; protein Smaug
E 101159139 focad; focadhesin K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 111946479 rnase4; ribonuclease 4 K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 101170545 ribonuclease ZC3H12A isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 101174123 zc3h12b; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 101162349 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 101175032 drosha; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 101174612 rexo2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 101165077 gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 101159663 alpha-enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 101163325 eno1; enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 101175265 eno2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 101159526 pnpt1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 101174339 ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 101163079 ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 101163356 pfkp; ATP-dependent 6-phosphofructokinase, platelet type isoform X3 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 101169572 pfkl; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 101155970 ATP-dependent 6-phosphofructokinase, platelet type isoform X7 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 101165155 hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 101163801 hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 101162770 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 101169338 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 101170622 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 101160328 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024