+F Repair protein KO
#
DNA Repair and Recombination Proteins - Pantoea sp. PSNIH1
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PSNIH1_10435 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D PSNIH1_10280 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E PSNIH1_01565 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PSNIH1_02655 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E PSNIH1_12780 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D PSNIH1_08440 nucleoside triphosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PSNIH1_05490 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PSNIH1_10435 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D PSNIH1_10280 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D PSNIH1_16390 alpha-ketoglutarate-dependent dioxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E PSNIH1_01565 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PSNIH1_03070 formamidopyrimidine-DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E PSNIH1_10430 Ada K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E PSNIH1_02655 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E PSNIH1_06015 DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E PSNIH1_05465 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E PSNIH1_10320 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E PSNIH1_12780 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E PSNIH1_14250 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E PSNIH1_16280 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E PSNIH1_06710 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E PSNIH1_02365 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E PSNIH1_00945 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E PSNIH1_05635 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E PSNIH1_07105 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E PSNIH1_20725 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E PSNIH1_10565 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E PSNIH1_11595 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E PSNIH1_12415 nucleotide excision repair endonuclease K05984 cho; excinuclease Cho [EC:3.1.25.-]
E PSNIH1_06400 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E PSNIH1_05635 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E PSNIH1_00945 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F PSNIH1_06665 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F PSNIH1_06670 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F PSNIH1_04295 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F PSNIH1_05550 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F PSNIH1_11990 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E PSNIH1_01960 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E PSNIH1_03970 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
E PSNIH1_02285 hypothetical protein K03573 mutH; DNA mismatch repair protein MutH
D DNA exonucleases
E PSNIH1_15770 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E PSNIH1_01310 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E PSNIH1_09500 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
E PSNIH1_14695 exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D DNA polymerase III holoenzyme
E PSNIH1_08775 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E PSNIH1_05910 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E PSNIH1_07770 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E PSNIH1_10090 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E PSNIH1_11940 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E PSNIH1_08905 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E PSNIH1_15620 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E PSNIH1_09745 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
E PSNIH1_08035 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
E PSNIH1_14690 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
E PSNIH1_00705 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D DNA ligase
E PSNIH1_00945 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E PSNIH1_06400 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E PSNIH1_07110 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E PSNIH1_03430 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E PSNIH1_03220 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E PSNIH1_04615 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E PSNIH1_19550 DNA modification methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E PSNIH1_15485 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E PSNIH1_02230 recB; exonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E PSNIH1_02240 recC; exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E PSNIH1_02225 recD; exonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E PSNIH1_01915 recA; recombinase A K03553 recA; recombination protein RecA
E PSNIH1_14765 ruvA; ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E PSNIH1_14760 ruvB; ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E PSNIH1_14770 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E PSNIH1_00575 Holliday junction resolvase K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
E PSNIH1_05225 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E PSNIH1_03885 primosomal replication protein N K02686 priB; primosomal replication protein N
E PSNIH1_09730 prephenate dehydrogenase K04067 priC; primosomal replication protein N''
E PSNIH1_06025 primosomal protein DnaI K02317 dnaT; DNA replication protein DnaT
E PSNIH1_15770 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E PSNIH1_09365 ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50
E PSNIH1_09370 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E PSNIH1_01915 recA; recombinase A K03553 recA; recombination protein RecA
E PSNIH1_08060 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E PSNIH1_05915 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
E PSNIH1_05565 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E PSNIH1_02365 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E PSNIH1_01505 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E PSNIH1_09755 recR; recombination protein RecR K06187 recR; recombination protein RecR
E PSNIH1_01580 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E PSNIH1_09350 recombination associated protein K03554 rdgC; recombination associated protein RdgC
E PSNIH1_19160 recombination associated protein K03554 rdgC; recombination associated protein RdgC
E PSNIH1_14765 ruvA; ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E PSNIH1_14760 ruvB; ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E PSNIH1_14770 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E PSNIH1_16345 hypothetical protein K19789 radD; DNA repair protein RadD
D Archaeal homologous recombinant proteins
E PSNIH1_09365 ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50
E PSNIH1_09370 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E PSNIH1_07795 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F PSNIH1_16445 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F PSNIH1_05920 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F PSNIH1_14040 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F PSNIH1_06720 DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
F PSNIH1_09590 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F PSNIH1_00675 DNA recombinase K07455 recT; recombination protein RecT
F PSNIH1_02365 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F PSNIH1_01505 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F PSNIH1_09755 recR; recombination protein RecR K06187 recR; recombination protein RecR
F PSNIH1_00945 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F PSNIH1_04160 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F PSNIH1_12500 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F PSNIH1_11195 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F PSNIH1_15770 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F PSNIH1_06430 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F PSNIH1_07105 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F PSNIH1_20725 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F PSNIH1_10565 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F PSNIH1_10870 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F PSNIH1_14200 transcriptional regulator K03746 hns; DNA-binding protein H-NS
F PSNIH1_p00540 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F PSNIH1_18610 KorB K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D PSNIH1_09075 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D PSNIH1_19230 DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V
D PSNIH1_00365 phage repressor protein K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D PSNIH1_15360 DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D PSNIH1_19225 protein impA' K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D PSNIH1_18810 protein impA' K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D PSNIH1_p01565 repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D PSNIH1_01915 recA; recombinase A K03553 recA; recombination protein RecA
D PSNIH1_07030 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D PSNIH1_01580 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D PSNIH1_08275 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D PSNIH1_07110 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PSNIH1_11755 damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D PSNIH1_03205 damage-inducible protein DinI K12149 dinI; DNA-damage-inducible protein I
D PSNIH1_01910 RecX family transcriptional regulator K03565 recX; regulatory protein
D PSNIH1_p00165 hypothetical protein K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]
D PSNIH1_20690 hypothetical protein K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D PSNIH1_06245 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D PSNIH1_11410 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D PSNIH1_10745 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D PSNIH1_14420 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D PSNIH1_13355 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D PSNIH1_08440 nucleoside triphosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PSNIH1_05490 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PSNIH1_01700 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PSNIH1_16455 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PSNIH1_16460 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D PSNIH1_01705 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024