+F Repair protein KO
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DNA Repair and Recombination Proteins - Paracoccidioides brasiliensis
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PADG_06483 uncharacterized protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E PADG_03840 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PADG_04800 uncharacterized protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E PADG_07993 uncharacterized protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E PADG_07677 8-oxoguanine glycosylase OGG1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E PADG_03264 uncharacterized protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E PADG_03656 DNA-(apurinic or apyrimidinic site) lyase APN1 K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E PADG_06115 DNA-(apurinic or apyrimidinic site) lyase APN2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F PADG_01056 DNA-directed DNA polymerase delta POL3 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F PADG_04120 DNA-directed DNA polymerase delta subunit POL31 K02328 POLD2; DNA polymerase delta subunit 2
F PADG_05001 uncharacterized protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F PADG_05098 DNA polymerase epsilon catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F PADG_03843 DNA polymerase epsilon noncatalytic subunit K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F PADG_01917 uncharacterized protein K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E PADG_06009 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E PADG_05364 DNA ligase (ATP) CDC9 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E PADG_01351 uncharacterized protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E PADG_01109 DNA 5'-adenosine monophosphate hydrolase K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E PADG_04478 polynucleotide kinase 3'-phosphatase K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E PADG_02607 uncharacterized protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F PADG_03527 uncharacterized protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F PADG_03246 uncharacterized protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F PADG_02683 UV excision repair protein Rad23 K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F PADG_05868 E3 ubiquitin-protein ligase RBX1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F PADG_03467 uncharacterized protein K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F PADG_01145 uncharacterized protein K15082 RAD7; DNA repair protein RAD7
F PADG_01144 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F PADG_06747 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F PADG_04340 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F PADG_06985 DNA-directed RNA polymerase II core subunit RPB3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F PADG_00067 DNA-directed RNA polymerase II subunit RPB4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F PADG_00848 DNA-directed RNA polymerase core subunit RPB5 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F PADG_04022 DNA-directed RNA polymerase core subunit RPO26 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F PADG_02558 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F PADG_05475 DNA-directed RNA polymerase core subunit RPB8 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F PADG_05205 DNA-directed RNA polymerase II core subunit RPB9 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F PADG_06520 DNA-directed RNA polymerase I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F PADG_01151 DNA-directed RNA polymerase II core subunit RPB11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F PADG_01790 DNA-directed RNA polymerase core subunit RPC10 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F PADG_05868 E3 ubiquitin-protein ligase RBX1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F PADG_03467 uncharacterized protein K10610 DDB1; DNA damage-binding protein 1
F PADG_01345 uncharacterized protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F PADG_01391 uncharacterized protein K10841 ERCC6; DNA excision repair protein ERCC-6
F PADG_05900 uncharacterized protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E PADG_07566 TFIIH/NER complex ATPase/helicase subunit SSL2 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E PADG_00859 DNA repair helicase rad15 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E PADG_01767 TFIIH/NER complex subunit TFB1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E PADG_06545 TFIIH/NER complex subunit SSL1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E PADG_05540 TFIIH/NER complex subunit TFB4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E PADG_01232 TFIIH/NER complex subunit TFB2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E PADG_06401 RNA polymerase II transcription factor B subunit 5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E PADG_04001 CMGC/CDK/CDK7 protein kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E PADG_02638 TFIIH complex kinase subunit CCL1 K06634 CCNH; cyclin H
E PADG_03131 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E PADG_07835 replication factor A subunit protein RFA1 K07466 RFA1; replication factor A1
E PADG_03459 uncharacterized protein K10739 RFA2; replication factor A2
D Other NER factors
E PADG_03820 DNA repair protein K10847 XPA; DNA-repair protein complementing XP-A cells
E PADG_04557 DNA repair protein RAD10 K10849 ERCC1; DNA excision repair protein ERCC-1
E PADG_07978 ssDNA endodeoxyribonuclease RAD1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E PADG_01270 ssDNA endodeoxyribonuclease RAD2 K10846 ERCC5; DNA excision repair protein ERCC-5
E PADG_05364 DNA ligase (ATP) CDC9 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E PADG_02566 uncharacterized protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E PADG_03668 uncharacterized protein K03869 CUL3; cullin 3
E PADG_05007 uncharacterized protein K03872 ELOC; elongin-C
E PADG_05246 uncharacterized protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E PADG_08183 DNA mismatch repair protein msh-2 K08735 MSH2; DNA mismatch repair protein MSH2
E PADG_08606 DNA mismatch repair protein MSH3 K08736 MSH3; DNA mismatch repair protein MSH3
E PADG_03063 mismatch repair ATPase MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E PADG_05557 uncharacterized protein K08734 MLH1; DNA mismatch repair protein MLH1
E PADG_06925 uncharacterized protein K10858 PMS2; DNA mismatch repair protein PMS2
E PADG_04531 uncharacterized protein K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E PADG_01056 DNA-directed DNA polymerase delta POL3 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E PADG_04120 DNA-directed DNA polymerase delta subunit POL31 K02328 POLD2; DNA polymerase delta subunit 2
E PADG_05001 uncharacterized protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E PADG_07835 replication factor A subunit protein RFA1 K07466 RFA1; replication factor A1
E PADG_03459 uncharacterized protein K10739 RFA2; replication factor A2
D RFC (replication factor C)
E PADG_07061 replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E PADG_04172 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E PADG_07059 replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
E PADG_02402 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E PADG_12138 uncharacterized protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E PADG_05364 DNA ligase (ATP) CDC9 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E PADG_04929 WD repeat-containing protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E PADG_05078 DNA repair protein (mre11) K10865 MRE11; double-strand break repair protein MRE11
E PADG_01588 MRX complex DNA-binding subunit K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E PADG_05078 DNA repair protein (mre11) K10865 MRE11; double-strand break repair protein MRE11
E PADG_01588 MRX complex DNA-binding subunit K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
E PADG_01904 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E PADG_01904 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
E PADG_07262 uncharacterized protein K10958 RAD57; DNA repair protein RAD57
D Rad52 family proteins
E PADG_08271 uncharacterized protein K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E PADG_04895 DNA-dependent ATPase RAD54 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E PADG_11148 uncharacterized protein K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E PADG_03738 uncharacterized protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E PADG_03738 uncharacterized protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E PADG_04954 DNA topoisomerase 3 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E PADG_04474 uncharacterized protein K15364 NCE4; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E PADG_07835 replication factor A subunit protein RFA1 K07466 RFA1; replication factor A1
E PADG_03459 uncharacterized protein K10739 RFA2; replication factor A2
D Protein phosphatase 4
E PADG_02714 uncharacterized protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E PADG_04683 DNA repair ATPase SMC5 K22803 SMC5; structural maintenance of chromosomes protein 5
E PADG_05923 DNA repair protein SMC6 K22804 SMC6; structural maintenance of chromosomes protein 6
E PADG_00223 uncharacterized protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E PADG_07333 Smc5-Smc6 complex subunit NSE4 K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E PADG_05062 uncharacterized protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E PADG_00919 uncharacterized protein K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E PADG_01900 proteasome regulatory particle lid subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E PADG_02195 uncharacterized protein K10991 SWI5; DNA repair protein Swi5/Sae3
E PADG_06786 uncharacterized protein K10992 SFR1; Swi5-dependent recombination DNA repair protein 1
E PADG_07531 structure-specific endonuclease subunit SLX1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E PADG_00790 uncharacterized protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E PADG_01640 uncharacterized protein K11339 MORF4L1; mortality factor 4-like protein 1
E PADG_04902 uncharacterized protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E PADG_07735 metalloendopeptidase WSS1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E PADG_07757 uncharacterized protein K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E PADG_02700 ATP-dependent DNA helicase II subunit 1 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E PADG_04958 uncharacterized protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E PADG_05078 DNA repair protein (mre11) K10865 MRE11; double-strand break repair protein MRE11
E PADG_01588 MRX complex DNA-binding subunit K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E PADG_05602 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E PADG_11980 uncharacterized protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E PADG_01911 DNA-directed DNA polymerase IV K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
E PADG_05346 uncharacterized protein K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E PADG_01109 DNA 5'-adenosine monophosphate hydrolase K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E PADG_03868 uncharacterized protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E PADG_03469 uncharacterized protein K11511 APITD1; centromere protein S
D Bloom's syndrome complex (BTR)
E PADG_03738 uncharacterized protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E PADG_04954 DNA topoisomerase 3 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E PADG_04474 uncharacterized protein K15364 NCE4; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E PADG_07686 uncharacterized protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E PADG_01904 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
E PADG_07657 uncharacterized protein K11137 TELO2; telomere length regulation protein
E PADG_05577 uncharacterized protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E PADG_04980 uncharacterized protein K23314 WRAP53; telomerase Cajal body protein 1
E PADG_02614 uncharacterized protein K24752 WDR70; WD repeat-containing protein 70
E PADG_04929 WD repeat-containing protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D PADG_07381 DNA-directed DNA polymerase eta K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D PADG_01670 uncharacterized protein K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D PADG_03714 uncharacterized protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D PADG_06124 DNA-directed DNA polymerase K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D PADG_06384 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D PADG_01045 DNA repair protein rad18 K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D PADG_05670 uncharacterized protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D PADG_07925 ubiquitin-conjugating enzyme E2 N K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D PADG_04917 uncharacterized protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D PADG_01376 uncharacterized protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D PADG_04749 uncharacterized protein K10903 HUS1; HUS1 checkpoint protein
D PADG_01587 uncharacterized protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D PADG_00018 uncharacterized protein K06662 HRAD17; cell cycle checkpoint protein
D PADG_04172 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D PADG_07059 replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
D PADG_02402 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D PADG_01587 uncharacterized protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D PADG_01229 uncharacterized protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D PADG_11078 uncharacterized protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D PADG_06473 uncharacterized protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D PADG_07657 uncharacterized protein K11137 TELO2; telomere length regulation protein
D PADG_05359 uncharacterized protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D PADG_02388 uncharacterized protein K23388 UBL4; ubiquitin-like protein 4
D PADG_06193 uncharacterized protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D PADG_00286 protein kinase MEC1 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D PADG_05676 DNA-binding protein kinase TEL1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D PADG_04831 CAMK/CAMKL/CHK1 protein kinase K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D PADG_04004 CAMK/RAD53 protein kinase K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D PADG_03666 uncharacterized protein K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D PADG_04056 14-3-3 family protein epsilon K06630 YWHAE; 14-3-3 protein epsilon
D PADG_04440 uncharacterized protein K06630 YWHAE; 14-3-3 protein epsilon
D PADG_05293 WEE protein kinase K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D PADG_00963 uncharacterized protein K24664 FKH; forkhead protein FKH
D PADG_05107 AAA family ATPase VPS4 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D PADG_04865 uncharacterized protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D PADG_03655 DNA-directed DNA polymerase K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D PADG_11161 uncharacterized protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
C Helicases
D PADG_07601 uncharacterized protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D PADG_06901 E3 ubiquitin-protein ligase PRP19 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D PADG_05399 pre-mRNA-splicing factor cef1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D PADG_08197 uncharacterized protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D PADG_01936 pre-mRNA-splicing factor prp46 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D PADG_07782 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PADG_04510 ribonucleoside-diphosphate reductase large chain K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D PADG_05643 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PADG_06483 uncharacterized protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E PADG_03840 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PADG_04500 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E PADG_01795 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E PADG_03264 uncharacterized protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D PADG_07782 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024