+E Transcription factors KO
#
Transcription Factors - Pseudomonas citronellolis
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D PcP3B5_43360 btr_4; HTH-type transcriptional activator Btr K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D PcP3B5_53260 transcriptional regulator EutR K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D PcP3B5_33660 transcriptional regulator EutR K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D PcP3B5_05570 adaA; Bifunctional transcriptional activator/DNA repair enzyme AdaA K06599 chpD; AraC family transcriptional regulator, chemosensory pili system protein ChpD
D PcP3B5_37800 feaR_2; Transcriptional activator FeaR K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D PcP3B5_33960 feaR_1; Transcriptional activator FeaR K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D PcP3B5_43580 feaR_3; Transcriptional activator FeaR K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D PcP3B5_13000 btr_1; HTH-type transcriptional activator Btr K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D PcP3B5_30670 nphR_3; Transcriptional activator NphR K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D PcP3B5_56220 Bacterial transcription activator, effector binding domain K13653 K13653; AraC family transcriptional regulator
D PcP3B5_21920 tetD; Transposon Tn10 TetD protein K07506 K07506; AraC family transcriptional regulator
D PcP3B5_42760 rhaR; HTH-type transcriptional activator RhaR K07506 K07506; AraC family transcriptional regulator
D PcP3B5_51590 ada; Bifunctional transcriptional activator/DNA repair enzyme Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D PcP3B5_61740 cdhR_15; HTH-type transcriptional regulator CdhR K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
D PcP3B5_15700 cdhR_5; HTH-type transcriptional regulator CdhR K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator
D PcP3B5_02040 cdhR_3; HTH-type transcriptional regulator CdhR K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D PcP3B5_01380 cdhR_1; HTH-type transcriptional regulator CdhR K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D PcP3B5_01410 cdhR_2; HTH-type transcriptional regulator CdhR K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D PcP3B5_28760 cdhR_8; HTH-type transcriptional regulator CdhR K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D PcP3B5_53010 gcvA_10; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PcP3B5_04460 gcvA_3; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PcP3B5_12730 gcvA_4; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PcP3B5_34970 gcvA_9; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PcP3B5_24590 gcvA_5; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PcP3B5_60300 gcvA_14; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PcP3B5_53030 gcvA_11; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PcP3B5_31690 gcvA_7; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PcP3B5_56650 gcvA_12; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PcP3B5_13010 gbpR_1; HTH-type transcriptional regulator GbpR K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D PcP3B5_21830 cynR_2; HTH-type transcriptional regulator CynR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D PcP3B5_60720 oxyR_2; Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D PcP3B5_52350 iciA; Chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D PcP3B5_06420 cynR_1; HTH-type transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D PcP3B5_38330 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D PcP3B5_60990 gbpR_6; HTH-type transcriptional regulator GbpR K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D PcP3B5_38840 dmlR_18; HTH-type transcriptional regulator DmlR K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D PcP3B5_30360 gltC_5; HTH-type transcriptional regulator GltC K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D PcP3B5_13910 gbpR_2; HTH-type transcriptional regulator GbpR K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D PcP3B5_29940 leuO_2; HTH-type transcriptional regulator LeuO K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator
D PcP3B5_61260 yjiE; HTH-type transcriptional regulator YjiE K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D PcP3B5_61530 cysL_7; HTH-type transcriptional regulator CysL K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D PcP3B5_15900 cmpR_2; HTH-type transcriptional activator CmpR K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D PcP3B5_02740 cmpR_1; HTH-type transcriptional activator CmpR K21711 pycR; LysR family transcriptional regulator, putative pyruvate carboxylase regulator
D PcP3B5_23400 benM_4; HTH-type transcriptional regulator BenM K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D PcP3B5_29420 gltR_2; HTH-type transcriptional regulator GltR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D PcP3B5_12700 yofA_1; HTH-type transcriptional regulator YofA K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D PcP3B5_00530 gcvA_2; Glycine cleavage system transcriptional activator K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator
C DeoR family
D PcP3B5_22730 glpR; Glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D PcP3B5_38990 degA; HTH-type transcriptional regulator DegA K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PcP3B5_34760 kdgR; HTH-type transcriptional regulator KdgR K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D PcP3B5_10880 cra; Catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D PcP3B5_28370 gntR_1; HTH-type transcriptional regulator GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D PcP3B5_54680 gntR_2; HTH-type transcriptional regulator GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D PcP3B5_58500 yvoA_2; HTH-type transcriptional repressor YvoA K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D PcP3B5_30640 yvoA_1; HTH-type transcriptional repressor YvoA K03710 K03710; GntR family transcriptional regulator
D PcP3B5_60930 lldR_4; Putative L-lactate dehydrogenase operon regulatory protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PcP3B5_54450 pdhR; Pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PcP3B5_54840 lldR_2; Putative L-lactate dehydrogenase operon regulatory protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PcP3B5_60850 lldR_3; Putative L-lactate dehydrogenase operon regulatory protein K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D PcP3B5_61170 gabR_3; HTH-type transcriptional regulatory protein GabR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PcP3B5_30430 gabR_1; HTH-type transcriptional regulatory protein GabR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PcP3B5_55820 gabR_2; HTH-type transcriptional regulatory protein GabR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PcP3B5_56550 lutR_2; HTH-type transcriptional regulator LutR K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
D PcP3B5_44520 csiR_2; HTH-type transcriptional repressor CsiR K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D PcP3B5_03900 mcbR_2; HTH-type transcriptional regulator McbR K23466 tgnR; GntR family transcriptional regulator, trigonelline degradation regulator
C TetR/AcrR family
D PcP3B5_61140 betI_4; HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D PcP3B5_41620 rutR_3; HTH-type transcriptional regulator RutR K09017 rutR; TetR/AcrR family transcriptional regulator
D PcP3B5_61930 rutR_4; HTH-type transcriptional regulator RutR K09017 rutR; TetR/AcrR family transcriptional regulator
D PcP3B5_51290 nemR_1; HTH-type transcriptional repressor NemR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PcP3B5_59950 nemR_2; HTH-type transcriptional repressor NemR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PcP3B5_29930 acrR_3; HTH-type transcriptional regulator AcrR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PcP3B5_48140 srpR; HTH-type transcriptional regulator SrpR K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D PcP3B5_51490 acrR_5; HTH-type transcriptional regulator AcrR K18135 nalD; TetR/AcrR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon
D PcP3B5_24290 fabR_1; HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D PcP3B5_56410 fabR_2; HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D PcP3B5_20030 kstR2_2; HTH-type transcriptional repressor KstR2 K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D PcP3B5_19300 putative DNA-binding transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D PcP3B5_60440 lrp_7; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PcP3B5_11130 lrp_3; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PcP3B5_13150 lrpC_1; HTH-type transcriptional regulator LrpC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PcP3B5_55390 lrpC_2; HTH-type transcriptional regulator LrpC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PcP3B5_09280 lrp_2; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PcP3B5_35970 lrp_6; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PcP3B5_00250 lrp_1; Leucine-responsive regulatory protein K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes
D PcP3B5_27900 lrp_5; Leucine-responsive regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D PcP3B5_39440 malT_2; HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D PcP3B5_43180 pknK_3; Serine/threonine-protein kinase PknK K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D PcP3B5_51430 pknK_5; Serine/threonine-protein kinase PknK K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D PcP3B5_33180 malT_1; HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D PcP3B5_50980 pknK_4; Serine/threonine-protein kinase PknK K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D PcP3B5_45140 slyA_2; Transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D PcP3B5_29660 slyA_1; Transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D PcP3B5_05640 mexR; Multidrug resistance operon repressor K18131 mexR; MarR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon
D PcP3B5_20370 ohrR_1; Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D PcP3B5_20700 ohrR_2; Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D PcP3B5_51530 hmrR; HTH-type transcriptional regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PcP3B5_36920 merR1; Mercuric resistance operon regulatory protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PcP3B5_44150 soxR; Redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D PcP3B5_09760 ycgE; HTH-type transcriptional repressor YcgE K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D PcP3B5_54400 fur; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PcP3B5_31390 hypothetical protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PcP3B5_00730 zur; Zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D PcP3B5_36240 iclR; Acetate operon repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D PcP3B5_36110 pcaR_5; Pca regulon regulatory protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D PcP3B5_23250 pcaR_3; Pca regulon regulatory protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D PcP3B5_07150 vfr; Cyclic AMP receptor-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PcP3B5_60010 crp_3; cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PcP3B5_33030 ntcA_2; Global nitrogen regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PcP3B5_33090 ntcA_3; Global nitrogen regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PcP3B5_12890 crp_1; cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PcP3B5_33560 fnr_2; Fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D PcP3B5_35950 anr_3; Transcriptional activator protein Anr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D PcP3B5_06440 anr_2; Transcriptional activator protein Anr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D PcP3B5_21440 fnr_1; Anaerobic regulatory protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D PcP3B5_36530 fnr_3; Fumarate and nitrate reduction regulatory protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D PcP3B5_02630 anr_1; Transcriptional activator protein Anr K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D PcP3B5_02650 ntcA_1; Global nitrogen regulator K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
C Rrf2 family
D PcP3B5_49950 iscR; HTH-type transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
C ArsR family
D PcP3B5_24630 aseR; HTH-type transcriptional repressor AseR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D PcP3B5_02720 ybbH_1; putative HTH-type transcriptional regulator YbbH K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D PcP3B5_16680 rpiR; HTH-type transcriptional regulator RpiR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D PcP3B5_07340 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D PcP3B5_55980 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PcP3B5_02980 hypothetical protein K07724 ner; Ner family transcriptional regulator
D PcP3B5_10810 anaerobic benzoate catabolism transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D PcP3B5_04770 higA; Antitoxin HigA K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D PcP3B5_17490 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D PcP3B5_16280 ntrC_2; Nitrogen assimilation regulatory protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D PcP3B5_51860 acoR_2; Acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D PcP3B5_35070 acoR_1; Acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D PcP3B5_03620 vnfA_1; Nitrogen fixation protein VnfA K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D PcP3B5_52130 zraR_8; Transcriptional regulatory protein ZraR K11914 sfa2; sigma-54 dependent transcriptional regulator
D PcP3B5_29260 norR2_1; Nitric oxide reductase transcription regulator NorR2 K12266 norR; anaerobic nitric oxide reductase transcription regulator
D PcP3B5_39540 norR2_2; Nitric oxide reductase transcription regulator NorR2 K12266 norR; anaerobic nitric oxide reductase transcription regulator
D PcP3B5_15180 rocR; Arginine utilization regulatory protein RocR K06714 rocR; arginine utilization regulatory protein
D PcP3B5_41930 mopA; Molybdenum-pterin-binding protein MopA K02019 modE; molybdate transport system regulatory protein
D PcP3B5_06270 modE; Transcriptional regulator ModE K02019 modE; molybdate transport system regulatory protein
D PcP3B5_27720 higA-2_2; Antitoxin igA-2 K07726 K07726; putative transcriptional regulator
D PcP3B5_36030 hypothetical protein K07726 K07726; putative transcriptional regulator
D PcP3B5_15640 higA-2_1; Antitoxin igA-2 K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D PcP3B5_06480 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D PcP3B5_02540 yccM; Putative electron transport protein YccM K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D PcP3B5_44070 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D PcP3B5_62250 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PcP3B5_43900 tyrR_1; Transcriptional regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D PcP3B5_47090 tyrR_2; Transcriptional regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D PcP3B5_46970 gcvR; Glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D PcP3B5_33970 paaX; Transcriptional repressor PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D PcP3B5_60080 rnk; Regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D PcP3B5_33530 pyrR_2; Bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D PcP3B5_05440 pyrR_1; Bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D PcP3B5_29450 paiB; Protease synthase and sporulation protein PAI 2 K07734 paiB; transcriptional regulator
D PcP3B5_05460 hypothetical protein K07735 algH; putative transcriptional regulator
D PcP3B5_01080 dksA_1; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D PcP3B5_53900 dksA_3; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D PcP3B5_08570 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D PcP3B5_12120 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0