+D GENES KO #

  KEGG Orthology (KO) - Pyrolobus fumarii

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:pfm00010] D Pyrfu_0065 bifunctional glucose-6-phosphate/mannose-6-phosphate isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D Pyrfu_1765 protein of unknown function DUF100 K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D Pyrfu_0889 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Pyrfu_1285 glyceraldehyde-3-phosphate dehydrogenase, type II K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D Pyrfu_1286 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Pyrfu_1542 phosphonopyruvate decarboxylase-related protein K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Pyrfu_1940 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Pyrfu_0863 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Pyrfu_1144 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pyrfu_0709 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Pyrfu_0708 thiamine pyrophosphate TPP-binding domain-containing protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Pyrfu_0711 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Pyrfu_0710 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Pyrfu_1274 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Pyrfu_1273 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Pyrfu_0975 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pyrfu_1411 CoA-binding domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D Pyrfu_1410 ATP-grasp domain protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D Pyrfu_1421 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pyrfu_0662 Aldehyde ferredoxin oxidoreductase K11389 gapor; glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) [EC:1.2.7.6] C 00020 Citrate cycle (TCA cycle) [PATH:pfm00020] D Pyrfu_1311 Citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Pyrfu_1059 Isocitrate dehydrogenase (NAD(+)) K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D Pyrfu_1144 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pyrfu_1274 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Pyrfu_1273 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Pyrfu_1272 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D Pyrfu_1271 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D Pyrfu_1215 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Pyrfu_1216 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Pyrfu_1277 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Pyrfu_1278 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pyrfu_1279 protein of unknown function DUF224 cysteine-rich region domain protein K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pyrfu_1276 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Pyrfu_1039 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Pyrfu_0636 Lactate/malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Pyrfu_0709 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Pyrfu_0708 thiamine pyrophosphate TPP-binding domain-containing protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Pyrfu_0711 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Pyrfu_0710 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00030 Pentose phosphate pathway [PATH:pfm00030] D Pyrfu_0065 bifunctional glucose-6-phosphate/mannose-6-phosphate isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D Pyrfu_1470 Transketolase domain-containing protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Pyrfu_1471 Transketolase central region K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Pyrfu_0602 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D Pyrfu_0648 Orotidine 5'-phosphate decarboxylase K08093 hxlA; 3-hexulose-6-phosphate synthase [EC:4.1.2.43] D Pyrfu_0251 6-phospho 3-hexuloisomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D Pyrfu_1292 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D Pyrfu_0897 PfkB domain protein K00852 rbsK; ribokinase [EC:2.7.1.15] D Pyrfu_1421 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pyrfu_0705 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Pyrfu_1808 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D Pyrfu_1589 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D Pyrfu_1765 protein of unknown function DUF100 K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] C 00040 Pentose and glucuronate interconversions D Pyrfu_1610 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:pfm00051] D Pyrfu_0065 bifunctional glucose-6-phosphate/mannose-6-phosphate isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D Pyrfu_1421 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pyrfu_1610 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D Pyrfu_1765 protein of unknown function DUF100 K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D Pyrfu_0889 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism D Pyrfu_1421 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] C 00053 Ascorbate and aldarate metabolism C 00500 Starch and sucrose metabolism [PATH:pfm00500] D Pyrfu_1421 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pyrfu_0065 bifunctional glucose-6-phosphate/mannose-6-phosphate isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pfm00520] D Pyrfu_0977 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Pyrfu_1473 Nucleotidyl transferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D Pyrfu_1421 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pyrfu_0065 bifunctional glucose-6-phosphate/mannose-6-phosphate isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D Pyrfu_0145 Glutamine--scyllo-inositol transaminase K13010 per; perosamine synthetase [EC:2.6.1.102] C 00620 Pyruvate metabolism [PATH:pfm00620] D Pyrfu_0975 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pyrfu_0709 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Pyrfu_0708 thiamine pyrophosphate TPP-binding domain-containing protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Pyrfu_0711 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Pyrfu_0710 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Pyrfu_1274 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Pyrfu_1273 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Pyrfu_1144 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pyrfu_1411 CoA-binding domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D Pyrfu_1410 ATP-grasp domain protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D Pyrfu_0636 Lactate/malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Pyrfu_1276 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Pyrfu_1039 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Pyrfu_0849 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Pyrfu_0863 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Pyrfu_1356 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0766 Propanoyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0370 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Pyrfu_1976 homocitrate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Pyrfu_1692 isopropylmalate/citramalate/homocitratesynthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pfm00630] D Pyrfu_0975 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pyrfu_0636 Lactate/malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Pyrfu_1311 Citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Pyrfu_1356 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0766 Propanoyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_1464 SPP-like hydrolase K22223 pgp; phosphoglycolate phosphatase [EC:3.1.3.18] D Pyrfu_1546 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pyrfu_1499 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pyrfu_0855 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Pyrfu_0854 Glycine cleavage system P-protein K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Pyrfu_0999 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pyrfu_1144 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pyrfu_0135 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Pyrfu_1205 hypothetical protein K00127 fdoI; formate dehydrogenase subunit gamma C 00640 Propanoate metabolism [PATH:pfm00640] D Pyrfu_0975 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pyrfu_1411 CoA-binding domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D Pyrfu_1410 ATP-grasp domain protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D Pyrfu_1144 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pyrfu_0709 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Pyrfu_0708 thiamine pyrophosphate TPP-binding domain-containing protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Pyrfu_0711 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Pyrfu_0710 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Pyrfu_1216 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Pyrfu_1215 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00650 Butanoate metabolism [PATH:pfm00650] D Pyrfu_1356 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0766 Propanoyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_1277 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Pyrfu_1278 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pyrfu_1279 protein of unknown function DUF224 cysteine-rich region domain protein K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pyrfu_1275 Vinylacetyl-CoA Delta-isomerase K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3] D Pyrfu_0709 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Pyrfu_0708 thiamine pyrophosphate TPP-binding domain-containing protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Pyrfu_0711 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Pyrfu_0710 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Pyrfu_1274 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Pyrfu_1273 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Pyrfu_0767 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D Pyrfu_1693 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pyrfu_1694 hypothetical protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:pfm00660] D Pyrfu_1693 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pyrfu_1694 hypothetical protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D Pyrfu_1216 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Pyrfu_1215 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Pyrfu_1886 3-isopropylmalate dehydratase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Pyrfu_0061 3-isopropylmalate dehydratase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Pyrfu_0744 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Pyrfu_1622 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Pyrfu_1900 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:pfm00562] D Pyrfu_1463 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Pyrfu_1321 Myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D Pyrfu_0046 hypothetical protein K07281 ipct; 1L-myo-inositol 1-phosphate cytidylyltransferase [EC:2.7.7.74] D Pyrfu_0047 CDP-alcohol phosphatidyltransferase K07291 dipps; CDP-L-myo-inositol myo-inositolphosphotransferase [EC:2.7.8.34] D Pyrfu_0889 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:pfm00190] D Pyrfu_0865 hypothetical protein K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D Pyrfu_0038 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D Pyrfu_1086 NADH dehydrogenase (ubiquinone) 30 kDa subunit K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D Pyrfu_1879 NADH-ubiquinone oxidoreductase subunit 8 K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D Pyrfu_1878 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D Pyrfu_1877 NADH-ubiquinone oxidoreductase chain 4L K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D Pyrfu_1875 NADH/Ubiquinone/plastoquinone (complex I) K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D Pyrfu_1876 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D Pyrfu_1874 NADH/Ubiquinone/plastoquinone (complex I) K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D Pyrfu_0149 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Pyrfu_1277 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Pyrfu_1278 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pyrfu_1279 protein of unknown function DUF224 cysteine-rich region domain protein K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pyrfu_1538 UbiA prenyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Pyrfu_0866 ATP synthase, A subunit K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D Pyrfu_1363 ATP synthase, B subunit K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D Pyrfu_1986 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D Pyrfu_0058 H+transporting two-sector ATPase E subunit K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D Pyrfu_0059 Vacuolar H+transporting two-sector ATPase F subunit K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D Pyrfu_0263 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D Pyrfu_0060 V-type ATPase 116 kDa subunit K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D Pyrfu_1584 Inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes [PATH:pfm00720] D Pyrfu_0709 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Pyrfu_0708 thiamine pyrophosphate TPP-binding domain-containing protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Pyrfu_0711 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Pyrfu_0710 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Pyrfu_0863 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Pyrfu_0849 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Pyrfu_0636 Lactate/malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Pyrfu_1276 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Pyrfu_1039 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Pyrfu_1277 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Pyrfu_1278 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pyrfu_1279 protein of unknown function DUF224 cysteine-rich region domain protein K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pyrfu_1215 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Pyrfu_1216 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Pyrfu_1031 coenzyme F390 synthetase-like protein K18861 K18861; 4-hydroxybutyrate---CoA ligase (AMP-forming) [EC:6.2.1.40] D Pyrfu_1275 Vinylacetyl-CoA Delta-isomerase K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3] D Pyrfu_1428 NAD-binding 3-hydroxyacyl-CoA dehydrogenase K15016 K15016; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase [EC:4.2.1.17 1.1.1.35] D Pyrfu_1356 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0766 Propanoyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_1274 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Pyrfu_1273 thiamine pyrophosphate TPP-binding domain-containing protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Pyrfu_1272 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D Pyrfu_1271 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D Pyrfu_0975 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:pfm00680] D Pyrfu_1205 hypothetical protein K00127 fdoI; formate dehydrogenase subunit gamma D Pyrfu_0745 molybdopterin oxidoreductase K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6] D Pyrfu_1499 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pyrfu_1940 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Pyrfu_0849 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Pyrfu_0636 Lactate/malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Pyrfu_1765 protein of unknown function DUF100 K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D Pyrfu_0251 6-phospho 3-hexuloisomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D Pyrfu_0648 Orotidine 5'-phosphate decarboxylase K08093 hxlA; 3-hexulose-6-phosphate synthase [EC:4.1.2.43] D Pyrfu_1443 glutamine amidotransferase class-II K22081 mgsA; methylamine---glutamate N-methyltransferase subunit A [EC:2.1.1.21] D Pyrfu_1444 ferredoxin-dependent glutamate synthase K22083 mgsC; methylamine---glutamate N-methyltransferase subunit C [EC:2.1.1.21] D Pyrfu_0271 nickel-dependent hydrogenase large subunit K14126 mvhA; F420-non-reducing hydrogenase large subunit [EC:1.12.99.- 1.8.98.5] D Pyrfu_0270 NADH ubiquinone oxidoreductase 20 kDa subunit K14128 mvhG; F420-non-reducing hydrogenase small subunit [EC:1.12.99.- 1.8.98.5] D Pyrfu_0975 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pyrfu_0709 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Pyrfu_0708 thiamine pyrophosphate TPP-binding domain-containing protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Pyrfu_0711 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Pyrfu_0710 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Pyrfu_0863 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Pyrfu_1542 phosphonopyruvate decarboxylase-related protein K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Pyrfu_0690 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pyrfu_0073 phosphoserine phosphatase-like hydrolase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:pfm00910] D Pyrfu_0672 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D Pyrfu_1339 hypothetical protein K10535 hao; hydroxylamine dehydrogenase [EC:1.7.2.6] D Pyrfu_1546 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pyrfu_0077 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] C 00920 Sulfur metabolism [PATH:pfm00920] D Pyrfu_0402 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Pyrfu_0645 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D Pyrfu_1269 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Pyrfu_1638 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Pyrfu_0819 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Pyrfu_0005 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Pyrfu_1433 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Pyrfu_1108 Pyridoxal-5'-phosphate-dependent protein beta subunit K10150 cysO; cysteine synthase / O-phosphoserine sulfhydrylase / cystathionine beta-synthase [EC:2.5.1.47 2.5.1.65 4.2.1.22] D Pyrfu_0811 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Pyrfu_0703 Cys/Met metabolism pyridoxal-phosphate-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:pfm00061] D Pyrfu_0068 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pyrfu_1121 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pyrfu_0810 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:pfm00071] D Pyrfu_1356 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0766 Propanoyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0810 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism C 00564 Glycerophospholipid metabolism [PATH:pfm00564] D Pyrfu_0904 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Pyrfu_0213 3-dehydroquinate synthase K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261] D Pyrfu_0154 geranylgeranylglyceryl phosphate synthase K17104 E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41] D Pyrfu_0922 Geranylgeranylglycerol-phosphategeranylgeranyltr ansferase K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42] D Pyrfu_0189 protein of unknown function DUF46 K19664 carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:pfm00230] D Pyrfu_0086 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Pyrfu_1421 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pyrfu_0705 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Pyrfu_1388 glutamine amidotransferase class-II K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Pyrfu_0372 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Pyrfu_0376 phosphoribosylamine/glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Pyrfu_1624 Phosphoribosylaminoimidazole carboxylase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D Pyrfu_1387 phosphoribosylformylglycinamidine synthase II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D Pyrfu_1374 phosphoribosylformylglycinamidine synthase, purS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D Pyrfu_1386 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Pyrfu_1359 Phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Pyrfu_1358 Phosphoribosylaminoimidazole carboxylase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Pyrfu_1373 phosphoribosylaminoimidazole-succinocarboxamides ynthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Pyrfu_0867 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Pyrfu_0911 IMP biosynthesis enzyme PurP domain protein K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23] D Pyrfu_0237 IMP biosynthesis enzyme PurP domain protein K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23] D Pyrfu_0927 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Pyrfu_1417 protein of unknown function DUF84 K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D Pyrfu_0698 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Pyrfu_1752 GMP synthase, small subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Pyrfu_1753 GMP synthase domain protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Pyrfu_0579 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pyrfu_0600 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Pyrfu_0052 adenylyl cyclase CyaB K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D Pyrfu_0890 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Pyrfu_1683 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Pyrfu_0101 Adenylate kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D Pyrfu_1823 Nucleoside-triphosphatase K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15] D Pyrfu_0971 histidine triad (HIT) protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53] D Pyrfu_0645 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D Pyrfu_0402 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] C 00240 Pyrimidine metabolism [PATH:pfm00240] D Pyrfu_0755 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Pyrfu_0754 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Pyrfu_1518 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Pyrfu_1517 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D Pyrfu_1515 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3] D Pyrfu_1514 dihydroorotate dehydrogenase family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D Pyrfu_1516 dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D Pyrfu_0235 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Pyrfu_1519 Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Pyrfu_1397 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Pyrfu_0927 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Pyrfu_0643 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Pyrfu_1686 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Pyrfu_0995 purine or other phosphorylase family 1 K00757 udp; uridine phosphorylase [EC:2.4.2.3] D Pyrfu_0600 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Pyrfu_0613 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D Pyrfu_0579 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pyrfu_1739 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Pyrfu_0634 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Pyrfu_0851 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:pfm00250] D Pyrfu_0606 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pyrfu_1579 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Pyrfu_0628 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Pyrfu_0838 alanine dehydrogenase K19244 ala; alanine dehydrogenase [EC:1.4.1.1] D Pyrfu_0752 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Pyrfu_0753 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Pyrfu_0890 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Pyrfu_0867 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Pyrfu_1518 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Pyrfu_1517 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D Pyrfu_0077 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Pyrfu_1546 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pyrfu_0755 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Pyrfu_0754 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Pyrfu_1386 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Pyrfu_0977 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Pyrfu_1388 glutamine amidotransferase class-II K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Pyrfu_0372 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:pfm00260] D Pyrfu_1317 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Pyrfu_0875 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Pyrfu_0704 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D Pyrfu_1596 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Pyrfu_1499 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pyrfu_1542 phosphonopyruvate decarboxylase-related protein K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Pyrfu_0690 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pyrfu_0073 phosphoserine phosphatase-like hydrolase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Pyrfu_0855 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Pyrfu_0854 Glycine cleavage system P-protein K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Pyrfu_0999 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pyrfu_1144 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pyrfu_0135 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Pyrfu_1108 Pyridoxal-5'-phosphate-dependent protein beta subunit K10150 cysO; cysteine synthase / O-phosphoserine sulfhydrylase / cystathionine beta-synthase [EC:2.5.1.47 2.5.1.65 4.2.1.22] D Pyrfu_1023 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Pyrfu_1085 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:pfm00270] D Pyrfu_0811 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Pyrfu_1108 Pyridoxal-5'-phosphate-dependent protein beta subunit K10150 cysO; cysteine synthase / O-phosphoserine sulfhydrylase / cystathionine beta-synthase [EC:2.5.1.47 2.5.1.65 4.2.1.22] D Pyrfu_0288 5-methyltetrahydropteroyltriglutamate--homocyste ineS-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Pyrfu_1926 Cobalamin-independent synthase MetE domain protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Pyrfu_0151 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Pyrfu_1370 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Pyrfu_1006 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Pyrfu_1422 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Pyrfu_1703 methylthioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] D Pyrfu_0948 purine or other phosphorylase family 1 K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] D Pyrfu_1018 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pyrfu_0368 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Pyrfu_1317 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Pyrfu_0875 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Pyrfu_0703 Cys/Met metabolism pyridoxal-phosphate-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Pyrfu_0606 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pyrfu_0636 Lactate/malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Pyrfu_0690 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pyrfu_0683 ParB domain protein nuclease K23370 serK; L-serine kinase (ADP) [EC:2.7.1.226] C 00280 Valine, leucine and isoleucine degradation [PATH:pfm00280] D Pyrfu_1144 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pyrfu_1467 NAD-binding 6-phosphogluconate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D Pyrfu_1356 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0766 Propanoyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0767 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pfm00290] D Pyrfu_1886 3-isopropylmalate dehydratase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Pyrfu_0061 3-isopropylmalate dehydratase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Pyrfu_0744 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Pyrfu_1622 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Pyrfu_1900 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Pyrfu_1693 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pyrfu_1694 hypothetical protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D Pyrfu_1598 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Pyrfu_1691 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Pyrfu_0370 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Pyrfu_1976 homocitrate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Pyrfu_1692 isopropylmalate/citramalate/homocitratesynthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:pfm00300] D Pyrfu_1317 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Pyrfu_0875 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Pyrfu_1037 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Pyrfu_1633 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D Pyrfu_0739 hypothetical protein K05826 lysW; alpha-aminoadipate/glutamate carrier protein LysW D Pyrfu_0740 lysine biosynthesis enzyme LysX K05827 lysX; [lysine-biosynthesis-protein LysW]---L-2-aminoadipate ligase [EC:6.3.2.43] D Pyrfu_0386 acetylglutamate kinase K05828 lysZ; [amino group carrier protein]-L-2-aminoadipate/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19] D Pyrfu_0758 N-acetyl-gamma-glutamyl-phosphate reductase K05829 lysY; [amino group carrier protein]-6-phospho-L-2-aminoadipate/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106] D Pyrfu_1804 aminotransferase class-III K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124] D Pyrfu_1737 N-acetyl-ornithine/N-acetyl-lysine deacetylase K05831 lysK; [amino group carrier protein]-lysine/ornithine hydrolase [EC:3.5.1.130 3.5.1.132] C 00310 Lysine degradation [PATH:pfm00310] D Pyrfu_1144 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pyrfu_1356 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0766 Propanoyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00220 Arginine biosynthesis [PATH:pfm00220] D Pyrfu_1525 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Pyrfu_0752 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Pyrfu_0753 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Pyrfu_1386 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Pyrfu_1546 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pyrfu_0606 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pyrfu_0739 hypothetical protein K05826 lysW; alpha-aminoadipate/glutamate carrier protein LysW D Pyrfu_0756 lysine biosynthesis enzyme LysX K19412 argX; glutamate---[amino group carrier protein] ligase [EC:6.3.2.60] D Pyrfu_0386 acetylglutamate kinase K05828 lysZ; [amino group carrier protein]-L-2-aminoadipate/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19] D Pyrfu_0758 N-acetyl-gamma-glutamyl-phosphate reductase K05829 lysY; [amino group carrier protein]-6-phospho-L-2-aminoadipate/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106] D Pyrfu_1804 aminotransferase class-III K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124] D Pyrfu_1737 N-acetyl-ornithine/N-acetyl-lysine deacetylase K05831 lysK; [amino group carrier protein]-lysine/ornithine hydrolase [EC:3.5.1.130 3.5.1.132] C 00330 Arginine and proline metabolism [PATH:pfm00330] D Pyrfu_1069 Creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D Pyrfu_0880 5-oxoprolinase (ATP-hydrolyzing) K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D Pyrfu_0762 5-oxoprolinase (ATP-hydrolyzing) K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D Pyrfu_1052 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D Pyrfu_0719 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D Pyrfu_1422 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Pyrfu_1370 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Pyrfu_1006 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Pyrfu_1004 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Pyrfu_0606 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:pfm00340] D Pyrfu_1451 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Pyrfu_1033 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D Pyrfu_1450 histidine biosynthesis protein K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Pyrfu_1032 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Pyrfu_1449 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Pyrfu_1723 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D Pyrfu_1445 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pyrfu_1447 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] C 00350 Tyrosine metabolism [PATH:pfm00350] D Pyrfu_0606 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pyrfu_1445 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00360 Phenylalanine metabolism [PATH:pfm00360] D Pyrfu_0606 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pyrfu_1445 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00380 Tryptophan metabolism [PATH:pfm00380] D Pyrfu_1144 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pyrfu_1356 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0766 Propanoyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pfm00400] D Pyrfu_0829 phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Pyrfu_1469 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Pyrfu_0853 dehydroquinase class I K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10] D Pyrfu_1884 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Pyrfu_0119 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Pyrfu_0607 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Pyrfu_1034 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Pyrfu_1035 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Pyrfu_1824 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Pyrfu_0614 N-(5'phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D Pyrfu_1393 Indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D Pyrfu_1023 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Pyrfu_1085 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Pyrfu_1472 Chorismate mutase, type II K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D Pyrfu_1264 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D Pyrfu_0606 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pyrfu_1445 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism D Pyrfu_1592 protein of unknown function DUF137 K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] C 00430 Taurine and hypotaurine metabolism D Pyrfu_0838 alanine dehydrogenase K19244 ala; alanine dehydrogenase [EC:1.4.1.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:pfm00450] D Pyrfu_0703 Cys/Met metabolism pyridoxal-phosphate-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Pyrfu_0288 5-methyltetrahydropteroyltriglutamate--homocyste ineS-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Pyrfu_1926 Cobalamin-independent synthase MetE domain protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Pyrfu_0712 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Pyrfu_0023 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Pyrfu_0402 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Pyrfu_0888 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:pfm00460] D Pyrfu_1579 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Pyrfu_1499 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:pfm00470] D Pyrfu_1386 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Pyrfu_1852 Mandelate racemase/muconate lactonizing protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] C 00480 Glutathione metabolism [PATH:pfm00480] D Pyrfu_1627 peptidase M17 leucyl aminopeptidase domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Pyrfu_0533 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pyrfu_1422 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis C 00552 Teichoic acid biosynthesis [PATH:pfm00552] D Pyrfu_0570 Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:pfm00730] D Pyrfu_1448 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Pyrfu_0689 Phosphomethylpyrimidine kinase K21219 thiDN; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3] D Pyrfu_0954 THUMP domain-containing protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Pyrfu_0846 Thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Pyrfu_0366 thiazole biosynthesis enzyme K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59] D Pyrfu_1869 AIR synthase related protein K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D Pyrfu_1823 Nucleoside-triphosphatase K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15] D Pyrfu_1683 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:pfm00740] D Pyrfu_1597 GTP cyclohydrolase IIa K08096 gch3; GTP cyclohydrolase IIa [EC:3.5.4.29] D Pyrfu_0394 bifunctional deaminase-reductase domain protein K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302] D Pyrfu_1314 34-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D Pyrfu_0127 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Pyrfu_1313 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Pyrfu_0197 protein of unknown function DUF120 K07732 rfk; riboflavin kinase, archaea type [EC:2.7.1.161] D Pyrfu_0012 cytidyltransferase-related domain protein K14656 ribL; FAD synthetase [EC:2.7.7.2] D Pyrfu_1980 nitroreductase K19286 nfrA2; FMN reductase [NAD(P)H] [EC:1.5.1.39] D Pyrfu_0086 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Pyrfu_1603 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:pfm00750] D Pyrfu_1596 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Pyrfu_0367 Vitamin B6 biosynthesis protein K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D Pyrfu_0003 SNO glutamine amidotransferase K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:pfm00760] D Pyrfu_0280 aspartate dehydrogenase K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21] D Pyrfu_1904 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D Pyrfu_0383 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D Pyrfu_1786 Nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D Pyrfu_1534 nicotinamide-nucleotide adenylyltransferase K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1] D Pyrfu_0208 nicotinamide-nucleotide adenylyltransferase K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1] D Pyrfu_1446 NAD+ synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D Pyrfu_0868 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Pyrfu_0105 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:pfm00770] D Pyrfu_1693 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pyrfu_1694 hypothetical protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D Pyrfu_1598 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Pyrfu_1691 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Pyrfu_0292 3-methyl-2-oxobutanoatehydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Pyrfu_1366 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D Pyrfu_0274 GHMP kinase K06982 pok; pantoate kinase [EC:2.7.1.169] D Pyrfu_1592 protein of unknown function DUF137 K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] D Pyrfu_0275 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Pyrfu_0254 protein of unknown function DUF359 K09735 dpck; GTP-dependent dephospho-CoA kinase [EC:2.7.1.237] C 00780 Biotin metabolism [PATH:pfm00780] D Pyrfu_0068 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pyrfu_1121 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00785 Lipoic acid metabolism [PATH:pfm00785] D Pyrfu_1488 Radical SAM domain protein K09711 lipS1; lipoyl synthase D Pyrfu_1489 Radical SAM domain protein K24689 lipS2; lipoyl synthase D Pyrfu_0731 biotin/lipoate A/B protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D Pyrfu_1144 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pyrfu_0855 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Pyrfu_0854 Glycine cleavage system P-protein K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Pyrfu_0999 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pyrfu_0135 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:pfm00790] D Pyrfu_1708 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D Pyrfu_0991 hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Pyrfu_0808 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Pyrfu_0776 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Pyrfu_0071 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Pyrfu_1818 metal dependent phosphohydrolase K17487 mptB; 7,8-dihydroneopterin 2',3'-cyclic phosphate phosphodiesterase [EC:3.1.4.56] D Pyrfu_0993 protein of unknown function DUF115 K07142 mptE; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Pyrfu_1305 GHMP kinase K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54] D Pyrfu_0027 hypothetical protein K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54] D Pyrfu_0265 beta-lactamase domain-containing protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D Pyrfu_1734 beta-lactamase superfamily hydrolase K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D Pyrfu_0994 flavoprotein K18853 dmrX; dihydromethanopterin reductase (acceptor) [EC:1.5.99.15] D Pyrfu_1539 Radical SAM domain protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Pyrfu_1936 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Pyrfu_1440 hypothetical protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Pyrfu_0245 molybdopterin biosynthesis MoaE protein K21142 moaX; MoaE-MoaD fusion protein [EC:2.8.1.12] D Pyrfu_1982 molybdenum cofactor synthesis domain protein K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D Pyrfu_1484 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Pyrfu_1145 hypothetical protein K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:pfm00670] D Pyrfu_1499 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pyrfu_0999 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pyrfu_0851 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Pyrfu_0936 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:pfm00860] D Pyrfu_0919 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pyrfu_1353 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D Pyrfu_1380 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Pyrfu_1379 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Pyrfu_1381 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D Pyrfu_1383 Uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D Pyrfu_1382 uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D Pyrfu_1354 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D Pyrfu_1352 Radical SAM domain protein K22226 ahbC; Fe-coproporphyrin III synthase D Pyrfu_0575 Radical SAM domain protein K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6] D Pyrfu_1538 UbiA prenyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Pyrfu_0835 cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Pyrfu_1349 cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D Pyrfu_1346 nucleoside triphosphate K19712 cobY; adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.7.62] D Pyrfu_1343 cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D Pyrfu_1345 aminotransferase class I and II K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pfm00130] D Pyrfu_1543 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Pyrfu_1544 UbiD family decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D Pyrfu_1603 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Pyrfu_1602 Methyltransferase type 11 K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D Pyrfu_0199 Radical SAM domain protein K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120] D Pyrfu_0200 Radical SAM domain protein K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1] D Pyrfu_0260 hypothetical protein K11785 mqnD; 1,4-dihydroxy-6-naphthoate synthase [EC:1.14.-.-] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:pfm00900] D Pyrfu_1356 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0766 Propanoyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0767 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D Pyrfu_1581 3-hydroxy-3-methylglutaryl Coenzyme A reductase K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34] D Pyrfu_0864 mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] D Pyrfu_0915 aspartate/glutamate/uridylate kinase K06981 ipk; isopentenyl phosphate kinase [EC:2.7.4.26] D Pyrfu_0193 protein of unknown function DUF521 K25517 acnX1; phosphomecalonate degydratase large subunit [EC:4.2.1.182] D Pyrfu_0194 protein of unknown function DUF126 K09128 acnX2; phosphomecalonate degydratase small subunit [EC:4.2.1.182] D Pyrfu_0192 Carboxylyase-related protein K25518 E4.1.1.126; anhydromevalonate phosphate decarboxylase [EC:4.1.1.126] D Pyrfu_1603 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Pyrfu_0916 isopentenyl-diphosphate delta-isomerase, type 2 K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D Pyrfu_0917 Polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Pyrfu_1960 undecaprenyl diphosphate synthase K15888 uppS; tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Pyrfu_1470 Transketolase domain-containing protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Pyrfu_1471 Transketolase central region K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:pfm00523] D Pyrfu_0978 hypothetical protein K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Pyrfu_0681 glucose-1-phosphate thymidyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Pyrfu_1473 Nucleotidyl transferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D Pyrfu_0680 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Pyrfu_0677 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Pyrfu_0679 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D Pyrfu_0680 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:pfm00261] D Pyrfu_0402 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Pyrfu_1317 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Pyrfu_0875 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:pfm00521] D Pyrfu_1421 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Pyrfu_1321 Myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D Pyrfu_1463 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Pyrfu_0978 hypothetical protein K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Pyrfu_0681 glucose-1-phosphate thymidyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Pyrfu_1473 Nucleotidyl transferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D Pyrfu_0680 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Pyrfu_0677 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Pyrfu_0679 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis [PATH:pfm00525] D Pyrfu_0978 hypothetical protein K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Pyrfu_0681 glucose-1-phosphate thymidyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Pyrfu_1473 Nucleotidyl transferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D Pyrfu_0680 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:pfm00401] D Pyrfu_1472 Chorismate mutase, type II K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D Pyrfu_0606 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pyrfu_1445 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D Pyrfu_1034 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Pyrfu_1035 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Pyrfu_0068 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pyrfu_1121 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics C 00999 Biosynthesis of various plant secondary metabolites D Pyrfu_0151 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D Pyrfu_1356 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0766 Propanoyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation D Pyrfu_1603 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation [PATH:pfm00633] D Pyrfu_0078 nickel-dependent hydrogenase large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D Pyrfu_0081 NiFe hydrogenase K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] D Pyrfu_0709 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Pyrfu_0708 thiamine pyrophosphate TPP-binding domain-containing protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Pyrfu_0711 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Pyrfu_0710 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:pfm03020] D Pyrfu_0220 DNA-directed RNA polymerase subunit B K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6] D Pyrfu_0221 DNA-directed RNA polymerase subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D Pyrfu_0222 DNA-directed RNA polymerase, subunit A'' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D Pyrfu_1057 DNA-directed RNA polymerase K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D Pyrfu_0179 RNA polymerase dimerization K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D Pyrfu_0252 DNA-directed RNA polymerase K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D Pyrfu_0168 RNA polymerase Rpb4 K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6] D Pyrfu_0099 hypothetical protein K03052 rpoG; DNA-directed RNA polymerase subunit G [EC:2.7.7.6] D Pyrfu_0219 RNA polymerase Rpb5 K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D Pyrfu_1948 RNA polymerase Rpb6 K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D Pyrfu_1053 RNA polymerase, N/8 Kd subunit K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D Pyrfu_0718 RNA polymerase Rbp10 K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] C 03022 Basal transcription factors [PATH:pfm03022] D Pyrfu_1777 transcription factor TFIIB cyclin-related protein K03124 TFIIB; transcription initiation factor TFIIB D Pyrfu_0716 Transcription factor TFIIB cyclin-related protein K03124 TFIIB; transcription initiation factor TFIIB D Pyrfu_0205 hypothetical protein K03124 TFIIB; transcription initiation factor TFIIB D Pyrfu_1452 TATA-box binding family protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D Pyrfu_1019 Transcription factor TFIIE, alpha subunit K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D Pyrfu_0780 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:pfm03010] D Pyrfu_1049 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Pyrfu_1664 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Pyrfu_1973 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Pyrfu_1679 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Pyrfu_0228 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Pyrfu_1673 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Pyrfu_1054 ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D Pyrfu_0230 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Pyrfu_1974 ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D Pyrfu_0225 ribosomal protein S23 (S12) K02950 RP-S12; small subunit ribosomal protein S12 D Pyrfu_1972 ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D Pyrfu_1672 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Pyrfu_0894 Ribosomal S13S15 domain protein K02956 RP-S15; small subunit ribosomal protein S15 D Pyrfu_1667 ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D Pyrfu_1649 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Pyrfu_1077 ribosomal protein S3Ae K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D Pyrfu_1670 Ribosomal protein S4E, central domain protein K02987 RP-S4e; small subunit ribosomal protein S4e D Pyrfu_0615 Ribosomal protein S6e K02991 RP-S6e; small subunit ribosomal protein S6e D Pyrfu_1416 ribosomal protein S8e K02995 RP-S8e; small subunit ribosomal protein S8e D Pyrfu_1950 Ribosomal protein S17e K02962 RP-S17e; small subunit ribosomal protein S17e D Pyrfu_0089 Ribosomal protein S19e K02966 RP-S19e; small subunit ribosomal protein S19e D Pyrfu_0747 Ribosomal protein S24e K02974 RP-S24e; small subunit ribosomal protein S24e D Pyrfu_1575 Ribosomal protein S26E K02976 RP-S26e; small subunit ribosomal protein S26e D Pyrfu_0186 Ribosomal protein S27E K02978 RP-S27e; small subunit ribosomal protein S27e D Pyrfu_0748 Ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D Pyrfu_0929 Ribosomal protein S28e K02979 RP-S28e; small subunit ribosomal protein S28e D Pyrfu_0959 30S ribosomal protein S30e K02983 RP-S30e; small subunit ribosomal protein S30e D Pyrfu_0989 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Pyrfu_1648 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Pyrfu_1660 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Pyrfu_1671 50S ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D Pyrfu_1675 ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D Pyrfu_0990 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Pyrfu_0988 Ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Pyrfu_1959 ribosomal protein 60S K02869 RP-L12; large subunit ribosomal protein L12 D Pyrfu_1055 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Pyrfu_1668 50S ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Pyrfu_1681 50S ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D Pyrfu_1678 ribosomal protein L18P/L5E K02881 RP-L18; large subunit ribosomal protein L18 D Pyrfu_1663 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Pyrfu_1662 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D Pyrfu_1669 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Pyrfu_1665 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Pyrfu_1680 ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D Pyrfu_1661 50S ribosomal protein L4P K02930 RP-L4e; large subunit ribosomal protein L4e D Pyrfu_0921 ribosomal protein L7Ae/L30e/S12e/Gadd45 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D Pyrfu_0173 Ribosomal protein L10e/L16 K02866 RP-L10e; large subunit ribosomal protein L10e D Pyrfu_1967 50S ribosomal protein L13e K02873 RP-L13e; large subunit ribosomal protein L13e D Pyrfu_1687 50S ribosomal protein L14e K02875 RP-L14e; large subunit ribosomal protein L14e D Pyrfu_0908 Ribosomal protein L15e K02877 RP-L15e; large subunit ribosomal protein L15e D Pyrfu_1056 50S ribosomal protein L18e K02883 RP-L18e; large subunit ribosomal protein L18e D Pyrfu_1677 Ribosomal protein L19e K02885 RP-L19e; large subunit ribosomal protein L19e D Pyrfu_0167 Ribosomal protein L21e K02889 RP-L21e; large subunit ribosomal protein L21e D Pyrfu_0928 Ribosomal protein L24E K02896 RP-L24e; large subunit ribosomal protein L24e D Pyrfu_0223 ribosomal protein L7Ae/L30e/S12e/Gadd45 K02908 RP-L30e; large subunit ribosomal protein L30e D Pyrfu_0981 Ribosomal protein L31e K02910 RP-L31e; large subunit ribosomal protein L31e D Pyrfu_1676 Ribosomal protein L32e K02912 RP-L32e; large subunit ribosomal protein L32e D Pyrfu_1685 Ribosomal protein L34e K02915 RP-L34e; large subunit ribosomal protein L34e D Pyrfu_1888 Ribosomal protein L35Ae K02917 RP-L35Ae; large subunit ribosomal protein L35Ae D Pyrfu_0218 Ribosomal protein L37e K02922 RP-L37e; large subunit ribosomal protein L37e D Pyrfu_1746 Ribosomal L37ae protein K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D Pyrfu_1454 50S ribosomal protein L38E K02923 RP-L38e; large subunit ribosomal protein L38e D Pyrfu_0980 Ribosomal protein L39e K02924 RP-L39e; large subunit ribosomal protein L39e D Pyrfu_0736 Ribosomal protein L40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D Pyrfu_0185 Ribosomal protein L44E K02929 RP-L44e; large subunit ribosomal protein L44e D Pyrfu_0983 50S ribosomal protein LX K02944 RP-LX; large subunit ribosomal protein LX D Pyrfu_R0005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pyrfu_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pyrfu_R0046 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:pfm00970] D Pyrfu_R0009 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pyrfu_R0001 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pyrfu_R0010 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pyrfu_R0018 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pyrfu_R0028 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pyrfu_R0007 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pyrfu_R0039 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pyrfu_R0029 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pyrfu_R0026 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Pyrfu_R0013 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Pyrfu_R0011 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Pyrfu_R0049 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Pyrfu_R0017 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Pyrfu_R0014 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pyrfu_R0003 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pyrfu_R0006 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pyrfu_R0040 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pyrfu_R0015 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pyrfu_R0008 tRNA-His K14226 tRNA-His; tRNA His D Pyrfu_R0045 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Pyrfu_R0041 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pyrfu_R0012 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pyrfu_R0050 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pyrfu_R0042 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pyrfu_R0035 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pyrfu_R0031 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Pyrfu_R0002 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Pyrfu_R0048 tRNA-Met K14230 tRNA-Met; tRNA Met D Pyrfu_R0022 tRNA-Met K14230 tRNA-Met; tRNA Met D Pyrfu_R0033 tRNA-Met K14230 tRNA-Met; tRNA Met D Pyrfu_R0044 tRNA-Met K14230 tRNA-Met; tRNA Met D Pyrfu_R0047 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Pyrfu_R0021 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pyrfu_R0037 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pyrfu_R0016 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pyrfu_R0032 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pyrfu_R0023 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pyrfu_R0034 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pyrfu_R0020 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pyrfu_R0043 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Pyrfu_R0038 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Pyrfu_R0024 tRNA-Val K14237 tRNA-Val; tRNA Val D Pyrfu_R0036 tRNA-Val K14237 tRNA-Val; tRNA Val D Pyrfu_R0051 tRNA-Val K14237 tRNA-Val; tRNA Val D Pyrfu_0919 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pyrfu_0286 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Pyrfu_0667 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Pyrfu_0267 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Pyrfu_0958 glutamyl-tRNA(Gln) amidotransferase, subunit D K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7] D Pyrfu_0957 aspartyl-tRNA(Asn) amidotransferase, B subunit K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7] D Pyrfu_0979 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Pyrfu_0646 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D Pyrfu_1705 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Pyrfu_0976 Threonyl-tRNA synthetase editing domain-containing protein K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Pyrfu_1507 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Pyrfu_1558 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Pyrfu_1921 TM1410 hypothetical-related protein K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D Pyrfu_0888 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Pyrfu_1855 aminoacyl-tRNA synthetase class Ia K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Pyrfu_0250 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Pyrfu_1655 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Pyrfu_0997 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Pyrfu_1360 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Pyrfu_0813 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Pyrfu_1300 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Pyrfu_0750 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Pyrfu_1324 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Pyrfu_0404 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Pyrfu_1800 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:pfm03060] D Pyrfu_1682 SecY protein K03076 secY; preprotein translocase subunit SecY D Pyrfu_0164 GTP-binding signal recognition particle SRP54 G-domain protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Pyrfu_R0019 RNA component of signal recognition particle K01983 ffs; SRP RNA D Pyrfu_0985 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Pyrfu_0156 Sec61beta family protein K09481 SEC61B; protein transport protein SEC61 subunit beta D Pyrfu_0986 protein translocase SEC61 complex, gamma subunit K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D Pyrfu_1983 Ribonucleoprotein complex SRP, Srp19 component K03105 SRP19; signal recognition particle subunit SRP19 D Pyrfu_0769 anion-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Pyrfu_0284 arsenite efflux ATP-binding protein ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Pyrfu_1425 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Pyrfu_1426 Sec-independent periplasmic protein translocase K03118 tatC; sec-independent protein translocase protein TatC D Pyrfu_1945 peptidase S26B, signal peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:pfm04122] D Pyrfu_1440 hypothetical protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Pyrfu_1539 Radical SAM domain protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Pyrfu_1805 MoaD family protein K03636 moaD; sulfur-carrier protein D Pyrfu_1807 hypothetical protein K03636 moaD; sulfur-carrier protein D Pyrfu_1107 thiamineS protein K03636 moaD; sulfur-carrier protein D Pyrfu_0245 molybdopterin biosynthesis MoaE protein K21142 moaX; MoaE-MoaD fusion protein [EC:2.8.1.12] D Pyrfu_0244 UBA/THIF-type NAD/FAD binding protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D Pyrfu_1936 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Pyrfu_1982 molybdenum cofactor synthesis domain protein K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D Pyrfu_0954 THUMP domain-containing protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Pyrfu_0846 Thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Pyrfu_1776 thiamineS protein K03154 thiS; sulfur carrier protein C 03050 Proteasome [PATH:pfm03050] D Pyrfu_1813 26S proteasome subunit P45 family K03420 psmR; proteasome regulatory subunit D Pyrfu_1741 proteasome endopeptidase complex, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D Pyrfu_0204 proteasome endopeptidase complex, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D Pyrfu_0214 proteasome endopeptidase complex, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] C 03018 RNA degradation [PATH:pfm03018] D Pyrfu_0177 hypothetical protein K07573 CSL4; exosome complex component CSL4 D Pyrfu_1743 KH domain protein K03679 RRP4; exosome complex component RRP4 D Pyrfu_1745 3' exoribonuclease K12589 RRP42; exosome complex component RRP42 D Pyrfu_1744 exosome complex exonuclease 1 K11600 RRP41; exosome complex component RRP41 D Pyrfu_1940 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] B B 09124 Replication and repair C 03030 DNA replication [PATH:pfm03030] D Pyrfu_0405 TOPRIM domain-containing protein K02316 dnaG; DNA primase [EC:2.7.7.101] D Pyrfu_1783 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Pyrfu_0295 DNA polymerase Pol2 K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D Pyrfu_1718 DNA polymerase B region K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D Pyrfu_0033 MCM family protein K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D Pyrfu_0183 DNA primase small subunit K02683 priS; DNA primase small subunit [EC:2.7.7.102] D Pyrfu_1715 DNA primase, large subunit K18882 priL; DNA primase large subunit D Pyrfu_0182 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1903 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1696 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1749 Replication factor C K04801 rfcS; replication factor C small subunit D Pyrfu_1748 AAA ATPase central domain protein K04800 rfcL; replication factor C large subunit D Pyrfu_0109 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Pyrfu_1977 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03410 Base excision repair [PATH:pfm03410] D Pyrfu_1939 HhH-GPD family protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Pyrfu_0182 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1903 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1696 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_0109 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Pyrfu_1977 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Pyrfu_0137 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Pyrfu_0664 Xylose isomerase domain-containing protein TIM barrel K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] C 03420 Nucleotide excision repair [PATH:pfm03420] D Pyrfu_0780 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D Pyrfu_1794 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Pyrfu_1303 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Pyrfu_0182 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1903 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1696 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1977 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03430 Mismatch repair [PATH:pfm03430] D Pyrfu_1608 DNA mismatch repair protein MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2 D Pyrfu_0182 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1903 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1696 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1977 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03440 Homologous recombination C 03450 Non-homologous end-joining D Pyrfu_0109 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 D Pyrfu_0253 DNA-directed RNA polymerase subunit E K15171 SUPT4H1; transcription elongation factor SPT4 D Pyrfu_0987 NusG antitermination factor K15172 SUPT5H; transcription elongation factor SPT5 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:pfm02010] D Pyrfu_0926 extracellular solute-binding protein family 1 K05772 tupA; tungstate transport system substrate-binding protein D Pyrfu_0925 ABC-type tungstate transport system, periplasmic component, TupA K05773 tupB; tungstate transport system permease protein D Pyrfu_0924 ABC transporter-related protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Pyrfu_0373 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Pyrfu_0374 binding-protein-dependent transport systems inner membrane component K02018 modB; molybdate transport system permease protein D Pyrfu_0375 ABC transporter-related protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Pyrfu_0869 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Pyrfu_1779 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Pyrfu_0871 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D Pyrfu_1781 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D Pyrfu_1782 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D Pyrfu_0872 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D Pyrfu_1780 ABC transporter-related protein K23537 nupA; general nucleoside transport system ATP-binding protein D Pyrfu_0870 ABC transporter-related protein K23537 nupA; general nucleoside transport system ATP-binding protein D Pyrfu_0881 extracellular solute-binding protein family 1 K17237 inoE; inositol-phosphate transport system substrate-binding protein D Pyrfu_0882 binding-protein-dependent transport systems inner membrane component K17238 inoF; inositol-phosphate transport system permease protein D Pyrfu_0883 binding-protein-dependent transport systems inner membrane component K17239 inoG; inositol-phosphate transport system permease protein D Pyrfu_0884 ABC transporter-related protein K17240 inoK; inositol-phosphate transport system ATP-binding protein D Pyrfu_0893 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D Pyrfu_0259 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D Pyrfu_0258 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Pyrfu_1316 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Pyrfu_1064 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pyrfu_0729 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pyrfu_1065 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Pyrfu_0727 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Pyrfu_1819 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Pyrfu_1820 ABC transporter-related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pyrfu_0726 ABC transporter-related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pyrfu_0725 ABC transporter-related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pyrfu_1821 ABC transporter-related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pyrfu_0651 hypothetical protein K02009 cbiN; cobalt/nickel transport protein D Pyrfu_0652 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein D Pyrfu_0650 cobalt transport protein K02008 cbiQ; cobalt/nickel transport system permease protein D Pyrfu_0649 ABC transporter-related protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Pyrfu_1849 cytochrome c assembly protein K02195 ccmC; heme exporter protein C D Pyrfu_1846 ABC-2 type transporter K02194 ccmB; heme exporter protein B D Pyrfu_1847 ABC transporter-related protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5] C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:pfm03070] D Pyrfu_1682 SecY protein K03076 secY; preprotein translocase subunit SecY D Pyrfu_0985 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Pyrfu_0164 GTP-binding signal recognition particle SRP54 G-domain protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Pyrfu_1425 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Pyrfu_1426 Sec-independent periplasmic protein translocase K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:pfm02020] D Pyrfu_0893 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D Pyrfu_1111 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Pyrfu_1546 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pyrfu_1356 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0766 Propanoyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0081 NiFe hydrogenase K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] D Pyrfu_0078 nickel-dependent hydrogenase large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:pfm02024] D Pyrfu_1034 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Pyrfu_1035 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Pyrfu_1064 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pyrfu_0729 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pyrfu_1065 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Pyrfu_0727 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Pyrfu_1819 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Pyrfu_1820 ABC transporter-related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pyrfu_0726 ABC transporter-related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pyrfu_0725 ABC transporter-related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pyrfu_1821 ABC transporter-related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pyrfu_0810 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pyrfu_0946 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pyrfu_0944 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pyrfu_0945 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pyrfu_1577 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pyrfu_1682 SecY protein K03076 secY; preprotein translocase subunit SecY D Pyrfu_0985 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Pyrfu_0164 GTP-binding signal recognition particle SRP54 G-domain protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Pyrfu_1940 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D Pyrfu_0835 cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance C 01502 Vancomycin resistance C 01503 Cationic antimicrobial peptide (CAMP) resistance B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:pfm01000] C 01001 Protein kinases [BR:pfm01001] D Pyrfu_1766 Mn2+dependent serine/threonine protein kinase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1] D Pyrfu_1955 Non-specific serine/threonine protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D Pyrfu_0799 Non-specific serine/threonine protein kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] D Pyrfu_1153 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] C 01009 Protein phosphatases and associated proteins [BR:pfm01009] D Pyrfu_1901 Translation initiation factor IF2/IF5 K03238 EIF2S2; translation initiation factor 2 subunit 2 D Pyrfu_0368 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Pyrfu_0073 phosphoserine phosphatase-like hydrolase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:pfm01002] D Pyrfu_0972 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D Pyrfu_0083 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D Pyrfu_0268 hypothetical protein K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D Pyrfu_1389 peptidase C15 pyroglutamyl peptidase I K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D Pyrfu_1752 GMP synthase, small subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Pyrfu_1753 GMP synthase domain protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Pyrfu_1388 glutamine amidotransferase class-II K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Pyrfu_0372 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Pyrfu_0977 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Pyrfu_0628 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Pyrfu_1627 peptidase M17 leucyl aminopeptidase domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Pyrfu_1037 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Pyrfu_0939 methionine aminopeptidase, type II K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Pyrfu_0026 peptidase M24 K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D Pyrfu_0562 peptidase M29 aminopeptidase II K19689 ampS; aminopeptidase [EC:3.4.11.-] D Pyrfu_1340 peptidase M48 Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Pyrfu_0117 peptidase zinc-dependent K06974 amzA; archaemetzincin [EC:3.4.-.-] D Pyrfu_0852 peptidase M55 D-aminopeptidase K16203 dppA1; D-amino peptidase [EC:3.4.11.-] D Pyrfu_0246 hypothetical protein K20110 JAMM1; desampylase [EC:3.4.19.15] D Pyrfu_1125 peptidase S8 and S53 subtilisin kexin sedolisin K01342 aprE; subtilisin [EC:3.4.21.62] D Pyrfu_1945 peptidase S26B, signal peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D Pyrfu_1537 Rhomboid family protein K07059 K07059; rhomboid family protein D Pyrfu_1741 proteasome endopeptidase complex, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D Pyrfu_0204 proteasome endopeptidase complex, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D Pyrfu_0214 proteasome endopeptidase complex, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D Pyrfu_1579 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Pyrfu_1845 peptidase U62 modulator of DNA gyrase K03592 pmbA; PmbA protein D Pyrfu_1851 peptidase U62 modulator of DNA gyrase K03568 tldD; TldD protein C 01003 Glycosyltransferases [BR:pfm01003] D Pyrfu_1701 Glycosyl transferase, family 4, conserved region K01001 ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15] D Pyrfu_1528 Oligosaccharyl transferase STT3 subunit K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase [EC:2.4.99.18] D Pyrfu_0009 glycosyl transferase family 2 K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] C 01005 Lipopolysaccharide biosynthesis proteins [BR:pfm01005] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pfm01011] D Pyrfu_0570 Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] C 01004 Lipid biosynthesis proteins [BR:pfm01004] D Pyrfu_0068 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pyrfu_1121 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pyrfu_0975 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pyrfu_1411 CoA-binding domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D Pyrfu_1410 ATP-grasp domain protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D Pyrfu_0810 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:pfm01006] D Pyrfu_0917 Polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Pyrfu_1543 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Pyrfu_1538 UbiA prenyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:pfm01007] D Pyrfu_0997 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Pyrfu_0919 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pyrfu_0404 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Pyrfu_1800 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Pyrfu_1558 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Pyrfu_1360 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Pyrfu_0888 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Pyrfu_1655 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Pyrfu_1855 aminoacyl-tRNA synthetase class Ia K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Pyrfu_0250 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Pyrfu_0646 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D Pyrfu_1300 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Pyrfu_1705 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Pyrfu_1507 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Pyrfu_0813 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Pyrfu_0976 Threonyl-tRNA synthetase editing domain-containing protein K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Pyrfu_0979 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Pyrfu_0750 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Pyrfu_1324 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Pyrfu_1921 TM1410 hypothetical-related protein K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D Pyrfu_0606 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pyrfu_1445 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pyrfu_1804 aminotransferase class-III K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124] D Pyrfu_1380 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Pyrfu_0145 Glutamine--scyllo-inositol transaminase K13010 per; perosamine synthetase [EC:2.6.1.102] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:pfm03000] D Pyrfu_1018 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pyrfu_1452 TATA-box binding family protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D Pyrfu_0238 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D Pyrfu_1095 transcription regulator protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Pyrfu_1309 iron (metal) dependent repressor, DtxR family K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D Pyrfu_1130 transcriptional regulator, TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D Pyrfu_0653 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein D Pyrfu_0428 hypothetical protein K07725 csa3; CRISPR-associated protein Csa3 D Pyrfu_1117 transcriptional regulator, XRE family K07728 K07728; putative transcriptional regulator D Pyrfu_1574 transcriptional regulator, XRE family K07731 K07731; putative transcriptional regulator D Pyrfu_0795 putative transcriptional regulator, CopG family K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C 03021 Transcription machinery [BR:pfm03021] D Pyrfu_1777 transcription factor TFIIB cyclin-related protein K03124 TFIIB; transcription initiation factor TFIIB D Pyrfu_0716 Transcription factor TFIIB cyclin-related protein K03124 TFIIB; transcription initiation factor TFIIB D Pyrfu_0205 hypothetical protein K03124 TFIIB; transcription initiation factor TFIIB D Pyrfu_1452 TATA-box binding family protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D Pyrfu_1019 Transcription factor TFIIE, alpha subunit K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D Pyrfu_0780 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D Pyrfu_0253 DNA-directed RNA polymerase subunit E K15171 SUPT4H1; transcription elongation factor SPT4 D Pyrfu_0987 NusG antitermination factor K15172 SUPT5H; transcription elongation factor SPT5 D Pyrfu_1477 ATP-binding protein of unknown function K24104 GPN; GPN-loop GTPase D Pyrfu_0638 ATP-binding protein of unknown function K24104 GPN; GPN-loop GTPase D Pyrfu_0224 NusA family KH domain protein K02600 nusA; transcription termination/antitermination protein NusA D Pyrfu_0221 DNA-directed RNA polymerase subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D Pyrfu_0222 DNA-directed RNA polymerase, subunit A'' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D Pyrfu_0220 DNA-directed RNA polymerase subunit B K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6] D Pyrfu_1057 DNA-directed RNA polymerase K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D Pyrfu_0252 DNA-directed RNA polymerase K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D Pyrfu_0168 RNA polymerase Rpb4 K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6] D Pyrfu_0099 hypothetical protein K03052 rpoG; DNA-directed RNA polymerase subunit G [EC:2.7.7.6] D Pyrfu_0219 RNA polymerase Rpb5 K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D Pyrfu_1948 RNA polymerase Rpb6 K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D Pyrfu_0179 RNA polymerase dimerization K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D Pyrfu_1053 RNA polymerase, N/8 Kd subunit K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D Pyrfu_0718 RNA polymerase Rbp10 K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] D Pyrfu_0180 transcription termination factor Tfs K03057 tfs; transcription factor S D Pyrfu_0202 DNA-directed RNA polymerase, M/15 kDa subunit K03057 tfs; transcription factor S C 03019 Messenger RNA biogenesis [BR:pfm03019] D Pyrfu_0253 DNA-directed RNA polymerase subunit E K15171 SUPT4H1; transcription elongation factor SPT4 D Pyrfu_0987 NusG antitermination factor K15172 SUPT5H; transcription elongation factor SPT5 D Pyrfu_0387 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Pyrfu_0111 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Pyrfu_0297 translation factor pelota K06965 PELO; protein pelota D Pyrfu_1919 peptide chain release factor 1 K03265 ETF1; peptide chain release factor subunit 1 D Pyrfu_0229 translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha D Pyrfu_0177 hypothetical protein K07573 CSL4; exosome complex component CSL4 D Pyrfu_1743 KH domain protein K03679 RRP4; exosome complex component RRP4 D Pyrfu_1744 exosome complex exonuclease 1 K11600 RRP41; exosome complex component RRP41 D Pyrfu_1745 3' exoribonuclease K12589 RRP42; exosome complex component RRP42 D Pyrfu_1940 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 03041 Spliceosome C 03011 Ribosome [BR:pfm03011] D Pyrfu_1077 ribosomal protein S3Ae K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D Pyrfu_1670 Ribosomal protein S4E, central domain protein K02987 RP-S4e; small subunit ribosomal protein S4e D Pyrfu_0615 Ribosomal protein S6e K02991 RP-S6e; small subunit ribosomal protein S6e D Pyrfu_1416 ribosomal protein S8e K02995 RP-S8e; small subunit ribosomal protein S8e D Pyrfu_1950 Ribosomal protein S17e K02962 RP-S17e; small subunit ribosomal protein S17e D Pyrfu_0089 Ribosomal protein S19e K02966 RP-S19e; small subunit ribosomal protein S19e D Pyrfu_0747 Ribosomal protein S24e K02974 RP-S24e; small subunit ribosomal protein S24e D Pyrfu_1575 Ribosomal protein S26E K02976 RP-S26e; small subunit ribosomal protein S26e D Pyrfu_0186 Ribosomal protein S27E K02978 RP-S27e; small subunit ribosomal protein S27e D Pyrfu_0748 Ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D Pyrfu_0929 Ribosomal protein S28e K02979 RP-S28e; small subunit ribosomal protein S28e D Pyrfu_0959 30S ribosomal protein S30e K02983 RP-S30e; small subunit ribosomal protein S30e D Pyrfu_1661 50S ribosomal protein L4P K02930 RP-L4e; large subunit ribosomal protein L4e D Pyrfu_0921 ribosomal protein L7Ae/L30e/S12e/Gadd45 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D Pyrfu_0173 Ribosomal protein L10e/L16 K02866 RP-L10e; large subunit ribosomal protein L10e D Pyrfu_1967 50S ribosomal protein L13e K02873 RP-L13e; large subunit ribosomal protein L13e D Pyrfu_1687 50S ribosomal protein L14e K02875 RP-L14e; large subunit ribosomal protein L14e D Pyrfu_0908 Ribosomal protein L15e K02877 RP-L15e; large subunit ribosomal protein L15e D Pyrfu_1056 50S ribosomal protein L18e K02883 RP-L18e; large subunit ribosomal protein L18e D Pyrfu_1677 Ribosomal protein L19e K02885 RP-L19e; large subunit ribosomal protein L19e D Pyrfu_0167 Ribosomal protein L21e K02889 RP-L21e; large subunit ribosomal protein L21e D Pyrfu_0928 Ribosomal protein L24E K02896 RP-L24e; large subunit ribosomal protein L24e D Pyrfu_0223 ribosomal protein L7Ae/L30e/S12e/Gadd45 K02908 RP-L30e; large subunit ribosomal protein L30e D Pyrfu_0981 Ribosomal protein L31e K02910 RP-L31e; large subunit ribosomal protein L31e D Pyrfu_1676 Ribosomal protein L32e K02912 RP-L32e; large subunit ribosomal protein L32e D Pyrfu_1685 Ribosomal protein L34e K02915 RP-L34e; large subunit ribosomal protein L34e D Pyrfu_1888 Ribosomal protein L35Ae K02917 RP-L35Ae; large subunit ribosomal protein L35Ae D Pyrfu_0218 Ribosomal protein L37e K02922 RP-L37e; large subunit ribosomal protein L37e D Pyrfu_1746 Ribosomal L37ae protein K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D Pyrfu_1454 50S ribosomal protein L38E K02923 RP-L38e; large subunit ribosomal protein L38e D Pyrfu_0980 Ribosomal protein L39e K02924 RP-L39e; large subunit ribosomal protein L39e D Pyrfu_0736 Ribosomal protein L40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D Pyrfu_0185 Ribosomal protein L44E K02929 RP-L44e; large subunit ribosomal protein L44e D Pyrfu_1049 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Pyrfu_1664 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Pyrfu_1973 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Pyrfu_1679 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Pyrfu_0228 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Pyrfu_1673 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Pyrfu_1054 ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D Pyrfu_0230 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Pyrfu_1974 ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D Pyrfu_0225 ribosomal protein S23 (S12) K02950 RP-S12; small subunit ribosomal protein S12 D Pyrfu_1972 ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D Pyrfu_1672 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Pyrfu_0894 Ribosomal S13S15 domain protein K02956 RP-S15; small subunit ribosomal protein S15 D Pyrfu_1667 ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D Pyrfu_1649 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Pyrfu_0989 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Pyrfu_1648 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Pyrfu_1660 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Pyrfu_1671 50S ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D Pyrfu_1675 ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D Pyrfu_0990 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Pyrfu_0988 Ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Pyrfu_1055 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Pyrfu_1668 50S ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Pyrfu_1681 50S ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D Pyrfu_1678 ribosomal protein L18P/L5E K02881 RP-L18; large subunit ribosomal protein L18 D Pyrfu_1663 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Pyrfu_1662 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D Pyrfu_1669 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Pyrfu_1665 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Pyrfu_1680 ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D Pyrfu_1959 ribosomal protein 60S K02869 RP-L12; large subunit ribosomal protein L12 D Pyrfu_0983 50S ribosomal protein LX K02944 RP-LX; large subunit ribosomal protein LX D Pyrfu_R0046 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pyrfu_R0005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pyrfu_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:pfm03009] D Pyrfu_1810 Pre-mRNA processing ribonucleoprotein, binding domain protein K14564 NOP56; nucleolar protein 56 D Pyrfu_1688 rRNA pseudouridine synthase K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] D Pyrfu_0188 RNA-binding protein Nop10p K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D Pyrfu_1934 Brix domain protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 D Pyrfu_0092 Suppressor Mra1 family protein K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260] D Pyrfu_0309 Suppressor Mra1 family protein K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260] D Pyrfu_0771 KH domain protein K06961 KRR1; ribosomal RNA assembly protein D Pyrfu_1955 Non-specific serine/threonine protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D Pyrfu_0799 Non-specific serine/threonine protein kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] D Pyrfu_0101 Adenylate kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D Pyrfu_0157 protein of unknown function DUF367 K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157] D Pyrfu_1762 ABC transporter-related protein K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 D Pyrfu_0206 small GTP-binding protein K06943 NOG1; nucleolar GTP-binding protein D Pyrfu_1666 Ribonuclease P, Rpp29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D Pyrfu_0827 ribonuclease P-related protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D Pyrfu_0826 RNase P subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D Pyrfu_0191 hypothetical protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] D Pyrfu_0587 GTPase or GTP-binding - cren protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] D Pyrfu_0982 translation initiation factor eIF-6 K03264 EIF6; translation initiation factor 6 D Pyrfu_1371 NMD3 family protein K07562 NMD3; 60S ribosomal export protein NMD3 D Pyrfu_1957 NMD3 family protein K07562 NMD3; 60S ribosomal export protein NMD3 D Pyrfu_1742 Ribosome maturation protein SBDS K14574 SDO1; ribosome maturation protein SDO1 D Pyrfu_0387 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Pyrfu_0111 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Pyrfu_0211 hypothetical protein K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7 D Pyrfu_0791 fibrillarin K04795 flpA; fibrillarin-like pre-rRNA processing protein D Pyrfu_0921 ribosomal protein L7Ae/L30e/S12e/Gadd45 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D Pyrfu_0224 NusA family KH domain protein K02600 nusA; transcription termination/antitermination protein NusA D Pyrfu_0170 ribosomal RNA adenine methylase transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Pyrfu_0806 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Pyrfu_0687 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Pyrfu_0020 RNA methylase, NOL1/NOP2/sun family K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Pyrfu_0830 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Pyrfu_1740 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Pyrfu_1074 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Pyrfu_1211 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Pyrfu_0663 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Pyrfu_1690 methyltransferase small K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D Pyrfu_0124 conserved hypothetical protein CHP00095 K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Pyrfu_0296 GCN5-related N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Pyrfu_1617 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Pyrfu_1700 alpha-L-glutamate ligase, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D Pyrfu_1406 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Pyrfu_0090 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein D Pyrfu_1864 GTPase of unknown function domain protein K06942 ychF; ribosome-binding ATPase D Pyrfu_0196 protein of unknown function DUF402 K22469 fau-1; probable ribonuclease FAU-1 [EC:3.1.26.-] C 03016 Transfer RNA biogenesis [BR:pfm03016] D Pyrfu_1666 Ribonuclease P, Rpp29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D Pyrfu_0827 ribonuclease P-related protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D Pyrfu_0826 RNase P subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D Pyrfu_0091 RNAse P, Rpr2/Rpp21 subunit K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5] D Pyrfu_0125 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D Pyrfu_1301 protein of unknown function UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D Pyrfu_0118 protein of unknown function DUF101 K24956 ZBTB8OS; protein archease D Pyrfu_0229 translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha D Pyrfu_0919 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pyrfu_0813 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Pyrfu_1655 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Pyrfu_0250 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Pyrfu_0888 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Pyrfu_1360 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Pyrfu_0979 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Pyrfu_1705 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Pyrfu_0976 Threonyl-tRNA synthetase editing domain-containing protein K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Pyrfu_1507 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Pyrfu_1558 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Pyrfu_1855 aminoacyl-tRNA synthetase class Ia K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Pyrfu_1300 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Pyrfu_0750 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Pyrfu_1324 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Pyrfu_0404 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Pyrfu_1800 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Pyrfu_1985 protein of unknown function DUF516 K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Pyrfu_0947 Threonyl/alanyl tRNA synthetase SAD K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] D Pyrfu_0067 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Pyrfu_0912 RNA modification enzyme, MiaB family K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5] D Pyrfu_0558 N2,N2-dimethylguanosine tRNA methyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216] D Pyrfu_0106 protein of unknown function Met10 K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Pyrfu_0140 protein of unknown function Met10 K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Pyrfu_0017 Methyltransferase type 11 K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D Pyrfu_0840 Wyosine base formation domain-containing protein K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] D Pyrfu_1306 protein of unknown function DUF207 K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282] D Pyrfu_1978 hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282] D Pyrfu_0115 tRNA pseudouridine synthase D TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D Pyrfu_0166 THUMP domain-containing protein K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25] D Pyrfu_1766 Mn2+dependent serine/threonine protein kinase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1] D Pyrfu_0399 metalloendopeptidase, glycoprotease family K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234] D Pyrfu_1406 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Pyrfu_1281 THUMP domain-containing protein K06963 TAN1; tRNA acetyltransferase TAN1 D Pyrfu_1553 THUMP domain-containing protein K06963 TAN1; tRNA acetyltransferase TAN1 D Pyrfu_0011 protein of unknown function UPF0278 K09006 K09006; RNA-free ribonuclease P [EC:3.1.26.5] D Pyrfu_1478 CCA-adding enzyme K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] D Pyrfu_1299 tRNA intron endonuclease, catalytic domain-containing protein K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] D Pyrfu_1605 tRNA intron endonuclease K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] D Pyrfu_0129 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D Pyrfu_1146 phosphotransferase KptA/Tpt1 K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-] D Pyrfu_0997 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Pyrfu_1921 TM1410 hypothetical-related protein K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D Pyrfu_0646 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D Pyrfu_1890 tRNA/rRNA methyltransferase (SpoU) K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D Pyrfu_0273 protein of unknown function DUF358 K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257] D Pyrfu_0165 hypothetical protein K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257] D Pyrfu_0210 RNA methylase, NOL1/NOP2/sun family K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-] D Pyrfu_0146 tRNA (guanine-N1-)-methyltransferase K15566 trm10; tRNA (adenine9-N1/guanine9-N1)-methyltransferase [EC:2.1.1.218 2.1.1.221] D Pyrfu_0172 rRNA (guanine-N(2)-)-methyltransferase K16318 trm14; tRNA (guanine6-N2)-methyltransferase [EC:2.1.1.256] D Pyrfu_1793 RNA methylase K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213] D Pyrfu_1651 PP-loop domain protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15] D Pyrfu_1760 protein of unknown function DUF509 K09119 cgi121; KEOPS complex subunit Cgi121 D Pyrfu_0071 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Pyrfu_0991 hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Pyrfu_0808 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Pyrfu_0776 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Pyrfu_0098 tRNA-guanine transglycosylase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48] D Pyrfu_0491 Queuine/other tRNA-ribosyltransferase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48] D Pyrfu_0954 THUMP domain-containing protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Pyrfu_0846 Thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Pyrfu_0159 domain of unknown function DUF1743 K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22] D Pyrfu_1302 domain of unknown function DUF1726 K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] D Pyrfu_1319 GCN5-related N-acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] D Pyrfu_0563 P-loop ATPase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] C 03012 Translation factors [BR:pfm03012] D Pyrfu_1956 translation initiation factor eIF-1A K03236 EIF1A; translation initiation factor 1A D Pyrfu_0717 translation initiation factor SUI1 K03113 EIF1; translation initiation factor 1 D Pyrfu_0187 translation initiation factor 2, alpha subunit K03237 EIF2S1; translation initiation factor 2 subunit 1 D Pyrfu_1901 Translation initiation factor IF2/IF5 K03238 EIF2S2; translation initiation factor 2 subunit 2 D Pyrfu_1458 GTP-binding protein synthesis factor K03242 EIF2S3; translation initiation factor 2 subunit 3 D Pyrfu_0163 translation initiation factor eIF-5A K03263 EIF5A; translation initiation factor 5A D Pyrfu_1882 translation initiation factor aIF-2 K03243 EIF5B; translation initiation factor 5B D Pyrfu_0982 translation initiation factor eIF-6 K03264 EIF6; translation initiation factor 6 D Pyrfu_0229 translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha D Pyrfu_0112 translation elongation factor aEF-1 beta K03232 EEF1B; elongation factor 1-beta D Pyrfu_1791 translation elongation factor aEF-2 K03234 EEF2; elongation factor 2 D Pyrfu_0174 diphthamide biosynthesis protein K07561 DPH1; 2-(3-amino-3-carboxypropyl)histidine synthase [EC:2.5.1.108] D Pyrfu_1060 ATP binding protein K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14] D Pyrfu_1919 peptide chain release factor 1 K03265 ETF1; peptide chain release factor subunit 1 D Pyrfu_0822 ribosomal L11 methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Pyrfu_0114 Aminoacyl-tRNA hydrolase K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] C 03110 Chaperones and folding catalysts [BR:pfm03110] D Pyrfu_0102 thermosome K22447 cct; archaeal chaperonin D Pyrfu_1949 thermosome K22447 cct; archaeal chaperonin D Pyrfu_1492 Heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Pyrfu_0658 hypothetical protein K13993 HSP20; HSP20 family protein D Pyrfu_0051 prefoldin, beta subunit K04798 pfdB; prefoldin beta subunit D Pyrfu_1395 hydrogenase expression/synthesis HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D Pyrfu_0247 hydrogenase expression/synthesis HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D Pyrfu_0695 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D Pyrfu_1125 peptidase S8 and S53 subtilisin kexin sedolisin K01342 aprE; subtilisin [EC:3.4.21.62] D Pyrfu_0212 peptidylprolyl isomerase FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D Pyrfu_1061 Thioredoxin domain-containing protein K03671 TXN; thioredoxin D Pyrfu_1372 hypothetical protein K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:pfm04131] D Pyrfu_0927 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Pyrfu_0387 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Pyrfu_0111 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Pyrfu_0769 anion-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Pyrfu_0284 arsenite efflux ATP-binding protein ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Pyrfu_0156 Sec61beta family protein K09481 SEC61B; protein transport protein SEC61 subunit beta D Pyrfu_0986 protein translocase SEC61 complex, gamma subunit K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D Pyrfu_0229 translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha C 04121 Ubiquitin system [BR:pfm04121] D Pyrfu_0736 Ribosomal protein L40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D Pyrfu_0748 Ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D Pyrfu_0959 30S ribosomal protein S30e K02983 RP-S30e; small subunit ribosomal protein S30e C 03051 Proteasome [BR:pfm03051] D Pyrfu_1741 proteasome endopeptidase complex, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D Pyrfu_0204 proteasome endopeptidase complex, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D Pyrfu_0214 proteasome endopeptidase complex, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D Pyrfu_1813 26S proteasome subunit P45 family K03420 psmR; proteasome regulatory subunit C 03032 DNA replication proteins [BR:pfm03032] D Pyrfu_0182 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1903 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1696 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_0109 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Pyrfu_1977 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Pyrfu_1018 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pyrfu_0188 RNA-binding protein Nop10p K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D Pyrfu_1688 rRNA pseudouridine synthase K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] D Pyrfu_1794 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Pyrfu_1303 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Pyrfu_0405 TOPRIM domain-containing protein K02316 dnaG; DNA primase [EC:2.7.7.101] D Pyrfu_1938 orc1/cdc6 family replication initiation protein K10725 cdc6A; archaeal cell division control protein 6 D Pyrfu_0001 orc1/cdc6 family replication initiation protein K10725 cdc6A; archaeal cell division control protein 6 D Pyrfu_0033 MCM family protein K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D Pyrfu_0183 DNA primase small subunit K02683 priS; DNA primase small subunit [EC:2.7.7.102] D Pyrfu_1715 DNA primase, large subunit K18882 priL; DNA primase large subunit D Pyrfu_0369 hypothetical protein K09723 ginS; DNA replication factor GINS D Pyrfu_1783 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Pyrfu_0295 DNA polymerase Pol2 K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D Pyrfu_1718 DNA polymerase B region K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D Pyrfu_1748 AAA ATPase central domain protein K04800 rfcL; replication factor C large subunit D Pyrfu_1749 Replication factor C K04801 rfcS; replication factor C small subunit D Pyrfu_1293 DNA topoisomerase (ATP-hydrolyzing) K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2] D Pyrfu_1294 DNA topoisomerase VI, B subunit K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2] D Pyrfu_1946 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Pyrfu_0654 reverse gyrase K03170 topG; reverse gyrase [EC:5.6.2.2 5.6.2.-] D Pyrfu_0963 reverse gyrase K03170 topG; reverse gyrase [EC:5.6.2.2 5.6.2.-] C 03036 Chromosome and associated proteins [BR:pfm03036] D Pyrfu_1018 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pyrfu_1659 protein of unknown function DUF171 K09142 SPOUT1; methyltransferase [EC:2.1.1.-] D Pyrfu_1915 integrase family protein K04763 xerD; integrase/recombinase XerD D Pyrfu_0248 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning D Pyrfu_1733 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning C 03400 DNA repair and recombination proteins [BR:pfm03400] D Pyrfu_1595 methylated-DNA/protein-cysteinemethyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Pyrfu_1939 HhH-GPD family protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Pyrfu_0182 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1903 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_1696 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Pyrfu_0109 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Pyrfu_1977 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Pyrfu_0780 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D Pyrfu_1794 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Pyrfu_1303 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Pyrfu_0774 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Pyrfu_0817 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Pyrfu_0634 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Pyrfu_0137 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Pyrfu_0664 Xylose isomerase domain-containing protein TIM barrel K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Pyrfu_0203 Deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D Pyrfu_1608 DNA mismatch repair protein MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2 D Pyrfu_1550 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 D Pyrfu_1551 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 D Pyrfu_0500 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Pyrfu_0974 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA D Pyrfu_1726 Resolvase, Holliday junction-type K03552 hjr; holliday junction resolvase [EC:3.1.21.10] D Pyrfu_1552 HerA-ATP synthase with barrel domain K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D Pyrfu_1946 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Pyrfu_0303 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Pyrfu_0966 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Pyrfu_1637 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Pyrfu_0579 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pyrfu_1355 protein of unknown function DUF650 K22585 nreA; DNA repair protein NreA C 03029 Mitochondrial biogenesis [BR:pfm03029] D Pyrfu_1666 Ribonuclease P, Rpp29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D Pyrfu_0827 ribonuclease P-related protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D Pyrfu_0826 RNase P subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D Pyrfu_0404 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Pyrfu_0250 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Pyrfu_1705 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Pyrfu_1360 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Pyrfu_0286 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Pyrfu_0667 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Pyrfu_0267 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Pyrfu_0248 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning D Pyrfu_1733 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning D Pyrfu_1538 UbiA prenyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:pfm02000] D Pyrfu_0373 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Pyrfu_0374 binding-protein-dependent transport systems inner membrane component K02018 modB; molybdate transport system permease protein D Pyrfu_0375 ABC transporter-related protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Pyrfu_0926 extracellular solute-binding protein family 1 K05772 tupA; tungstate transport system substrate-binding protein D Pyrfu_0925 ABC-type tungstate transport system, periplasmic component, TupA K05773 tupB; tungstate transport system permease protein D Pyrfu_0924 ABC transporter-related protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Pyrfu_0881 extracellular solute-binding protein family 1 K17237 inoE; inositol-phosphate transport system substrate-binding protein D Pyrfu_0882 binding-protein-dependent transport systems inner membrane component K17238 inoF; inositol-phosphate transport system permease protein D Pyrfu_0883 binding-protein-dependent transport systems inner membrane component K17239 inoG; inositol-phosphate transport system permease protein D Pyrfu_0884 ABC transporter-related protein K17240 inoK; inositol-phosphate transport system ATP-binding protein D Pyrfu_0869 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Pyrfu_1779 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Pyrfu_0871 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D Pyrfu_1781 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D Pyrfu_1782 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D Pyrfu_0872 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D Pyrfu_1780 ABC transporter-related protein K23537 nupA; general nucleoside transport system ATP-binding protein D Pyrfu_0870 ABC transporter-related protein K23537 nupA; general nucleoside transport system ATP-binding protein D Pyrfu_0893 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D Pyrfu_0259 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D Pyrfu_0258 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Pyrfu_1316 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Pyrfu_1064 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pyrfu_0729 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pyrfu_1065 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Pyrfu_0727 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Pyrfu_1819 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Pyrfu_1820 ABC transporter-related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pyrfu_0726 ABC transporter-related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pyrfu_0725 ABC transporter-related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pyrfu_1821 ABC transporter-related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pyrfu_0946 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pyrfu_0944 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pyrfu_0945 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pyrfu_1577 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pyrfu_0701 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pyrfu_1223 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pyrfu_0422 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pyrfu_0423 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Pyrfu_0700 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Pyrfu_0424 ABC transporter-related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Pyrfu_0651 hypothetical protein K02009 cbiN; cobalt/nickel transport protein D Pyrfu_0650 cobalt transport protein K02008 cbiQ; cobalt/nickel transport system permease protein D Pyrfu_0652 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein D Pyrfu_0649 ABC transporter-related protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Pyrfu_0796 periplasmic solute binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D Pyrfu_0722 ABC transporter-related protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D Pyrfu_1849 cytochrome c assembly protein K02195 ccmC; heme exporter protein C D Pyrfu_1846 ABC-2 type transporter K02194 ccmB; heme exporter protein B D Pyrfu_1847 ABC transporter-related protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Pyrfu_0549 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Pyrfu_0684 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Pyrfu_1871 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D Pyrfu_1436 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Pyrfu_1435 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Pyrfu_0550 ABC transporter-related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Pyrfu_0685 ABC transporter-related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Pyrfu_1013 ABC transporter-related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Pyrfu_1872 ABC transporter-related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Pyrfu_1434 ABC transporter-related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Pyrfu_1897 ABC transporter-related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Pyrfu_0468 ABC transporter-related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Pyrfu_0413 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Pyrfu_0414 ABC transporter-related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Pyrfu_1441 ABC transporter-related protein K09013 sufC; Fe-S cluster assembly ATP-binding protein D Pyrfu_0828 Ion transport 2 domain protein K10716 kch; voltage-gated potassium channel D Pyrfu_1000 Ion transport 2 domain protein K10716 kch; voltage-gated potassium channel D Pyrfu_1110 ammonium transporter K03320 amt; ammonium transporter, Amt family D Pyrfu_0533 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pyrfu_0933 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog D Pyrfu_1361 MgtE integral membrane region K07244 K07244; mgtE-like transporter D Pyrfu_0905 CrcB protein K06199 crcB; fluoride exporter D Pyrfu_0920 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family D Pyrfu_1837 hypothetical protein K07301 yrbG; cation:H+ antiporter D Pyrfu_1868 cation transporter K03498 trkH; trk/ktr system potassium uptake protein D Pyrfu_1941 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Pyrfu_0820 Cl-channel voltage-gated family protein K03281 clcA; chloride channel protein, CIC family D Pyrfu_0769 anion-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Pyrfu_0284 arsenite efflux ATP-binding protein ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Pyrfu_1883 Auxin Efflux Carrier K24180 mleP; malate permease and related proteins D Pyrfu_1684 hypothetical protein K16789 thiT; thiamine transporter D Pyrfu_0378 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein D Pyrfu_1003 FeoA family protein K04758 feoA; ferrous iron transport protein A D Pyrfu_1323 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D Pyrfu_1647 hypothetical protein K25503 cedB; DNA import protein CedB D Pyrfu_1645 hypothetical protein K25504 cedA; DNA import protein CedA D Pyrfu_1644 hypothetical protein K25505 cedA1; DNA import protein CedA1 D Pyrfu_0397 cytochrome c assembly protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF C 02044 Secretion system [BR:pfm02044] D Pyrfu_1613 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D Pyrfu_1148 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D Pyrfu_0349 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D Pyrfu_1296 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D Pyrfu_1612 Type II secretion system F protein K07333 flaJ; archaeal flagellar protein FlaJ D Pyrfu_0348 Type II secretion system F protein K07333 flaJ; archaeal flagellar protein FlaJ D Pyrfu_1611 Type II secretion system F protein K07333 flaJ; archaeal flagellar protein FlaJ D Pyrfu_1147 Type II secretion system F protein K07333 flaJ; archaeal flagellar protein FlaJ D Pyrfu_0972 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D Pyrfu_1682 SecY protein K03076 secY; preprotein translocase subunit SecY D Pyrfu_0164 GTP-binding signal recognition particle SRP54 G-domain protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Pyrfu_0985 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Pyrfu_0156 Sec61beta family protein K09481 SEC61B; protein transport protein SEC61 subunit beta D Pyrfu_0986 protein translocase SEC61 complex, gamma subunit K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D Pyrfu_1983 Ribonucleoprotein complex SRP, Srp19 component K03105 SRP19; signal recognition particle subunit SRP19 D Pyrfu_1425 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Pyrfu_1426 Sec-independent periplasmic protein translocase K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins C 02022 Two-component system C 02035 Bacterial motility proteins [BR:pfm02035] D Pyrfu_1613 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D Pyrfu_1148 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D Pyrfu_0349 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D Pyrfu_1296 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D Pyrfu_1612 Type II secretion system F protein K07333 flaJ; archaeal flagellar protein FlaJ D Pyrfu_0348 Type II secretion system F protein K07333 flaJ; archaeal flagellar protein FlaJ D Pyrfu_1611 Type II secretion system F protein K07333 flaJ; archaeal flagellar protein FlaJ D Pyrfu_1147 Type II secretion system F protein K07333 flaJ; archaeal flagellar protein FlaJ D Pyrfu_0972 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:pfm04812] D Pyrfu_0913 protein of unknown function DUF52 K06990 MEMO1; MEMO1 family protein C 04147 Exosome [BR:pfm04147] D Pyrfu_1940 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Pyrfu_1286 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Pyrfu_0231 Peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D Pyrfu_0229 translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha D Pyrfu_1791 translation elongation factor aEF-2 K03234 EEF2; elongation factor 2 D Pyrfu_0109 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Pyrfu_0748 Ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D Pyrfu_0387 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Pyrfu_0111 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Pyrfu_0067 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Pyrfu_0810 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pyrfu_1356 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0766 Propanoyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pyrfu_0368 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Pyrfu_1683 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Pyrfu_0753 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Pyrfu_0752 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Pyrfu_1546 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pyrfu_1379 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Pyrfu_0690 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pyrfu_1144 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pyrfu_0889 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:pfm02048] D Pyrfu_0500 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Pyrfu_0499 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 D Pyrfu_0433 CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D Pyrfu_0506 helicase domain protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D Pyrfu_0501 CRISPR-associated protein, Csa1 family K19085 csa1; CRISPR-associated protein Csa1 D Pyrfu_0430 CRISPR-associated autoregulator, DevR family K19074 csa2; CRISPR-associated protein Csa2 D Pyrfu_0509 CRISPR-associated autoregulator, DevR family K19074 csa2; CRISPR-associated protein Csa2 D Pyrfu_0428 hypothetical protein K07725 csa3; CRISPR-associated protein Csa3 D Pyrfu_0494 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D Pyrfu_0578 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D Pyrfu_0431 CRISPR-associated protein Cas5 family K19089 cas5a_b_c; CRISPR-associated protein Cas5a/b/c D Pyrfu_0447 hypothetical protein K19076 cmr2; CRISPR-associated protein Cmr2 D Pyrfu_0446 CRISPR-associated RAMP protein, Cmr4 family K09000 cmr4; CRISPR-associated protein Cmr4 D Pyrfu_0444 hypothetical protein K19142 cmr6; CRISPR-associated protein Cmr6 D Pyrfu_1918 DxTHG motif CRISPR-associated protein K19143 csx1; CRISPR-associated protein Csx1 D Pyrfu_1018 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pyrfu_1857 transcriptional regulator, AbrB family K07172 mazE; antitoxin MazE D Pyrfu_1400 hypothetical protein K19164 ccdA; antitoxin CcdA D Pyrfu_1593 hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4 D Pyrfu_0524 death-on-curing family protein K07341 doc; death on curing protein D Pyrfu_0919 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pyrfu_1041 Nucleotide binding protein PINc K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:pfm03100] D Pyrfu_R0009 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pyrfu_R0001 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pyrfu_R0010 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pyrfu_R0018 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pyrfu_R0028 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pyrfu_R0007 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pyrfu_R0039 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pyrfu_R0029 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pyrfu_R0026 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Pyrfu_R0013 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Pyrfu_R0011 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Pyrfu_R0049 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Pyrfu_R0017 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Pyrfu_R0014 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pyrfu_R0003 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pyrfu_R0006 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pyrfu_R0040 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pyrfu_R0015 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pyrfu_R0008 tRNA-His K14226 tRNA-His; tRNA His D Pyrfu_R0045 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Pyrfu_R0041 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pyrfu_R0012 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pyrfu_R0050 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pyrfu_R0042 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pyrfu_R0035 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pyrfu_R0031 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Pyrfu_R0002 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Pyrfu_R0048 tRNA-Met K14230 tRNA-Met; tRNA Met D Pyrfu_R0022 tRNA-Met K14230 tRNA-Met; tRNA Met D Pyrfu_R0033 tRNA-Met K14230 tRNA-Met; tRNA Met D Pyrfu_R0044 tRNA-Met K14230 tRNA-Met; tRNA Met D Pyrfu_R0047 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Pyrfu_R0021 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pyrfu_R0037 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pyrfu_R0016 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pyrfu_R0032 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pyrfu_R0023 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pyrfu_R0034 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pyrfu_R0020 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pyrfu_R0043 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Pyrfu_R0038 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Pyrfu_R0024 tRNA-Val K14237 tRNA-Val; tRNA Val D Pyrfu_R0036 tRNA-Val K14237 tRNA-Val; tRNA Val D Pyrfu_R0051 tRNA-Val K14237 tRNA-Val; tRNA Val D Pyrfu_R0005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pyrfu_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pyrfu_R0046 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pyrfu_R0019 RNA component of signal recognition particle K01983 ffs; SRP RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Pyrfu_0285 iron-containing alcohol dehydrogenase K11173 ADHFE1; hydroxyacid-oxoacid transhydrogenase [EC:1.1.99.24] D Pyrfu_1068 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K18367 CoADR; CoA-dependent NAD(P)H sulfur oxidoreductase [EC:1.8.1.18] D Pyrfu_0315 Desulfoferrodoxin ferrous iron-binding region K05919 dfx; superoxide reductase [EC:1.15.1.2] D Pyrfu_0833 Radical SAM domain protein K06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5] D Pyrfu_1773 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Pyrfu_1862 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Pyrfu_1079 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Pyrfu_1260 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Pyrfu_1513 Radical SAM domain protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Pyrfu_0108 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Pyrfu_1089 diphthine synthase K20215 dph5; diphthine synthase [EC:2.1.1.98] D Pyrfu_0016 Radical SAM domain protein K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350] D Pyrfu_1288 modD protein K03813 modD; molybdenum transport protein [EC:2.4.2.-] D Pyrfu_1599 Deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D Pyrfu_1711 CDP-alcohol phosphatidyltransferase K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39] D Pyrfu_0133 Appr-1-p processing domain protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D Pyrfu_0070 phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D Pyrfu_1282 protein of unknown function DUF89 K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-] D Pyrfu_1582 protein of unknown function DUF89 K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-] D Pyrfu_0831 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Pyrfu_1713 protein of unknown function DUF91 K07503 nucS; endonuclease [EC:3.1.-.-] D Pyrfu_1751 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D Pyrfu_1510 ATPase associated with various cellular activities AAA_5 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Pyrfu_1044 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Pyrfu_0209 protein of unknown function DUF62 K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3] D Pyrfu_0961 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Pyrfu_1609 N-glycosylase/DNA lyase K01741 E4.2.99.18; DNA-(apurinic or apyrimidinic site) lyase [EC:4.2.99.18] D Pyrfu_0207 RNA 3'-phosphate cyclase K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4] D Pyrfu_1465 ATP dependent DNA ligase K07468 K07468; DNA/RNA ligase [EC:6.5.1.-] D Pyrfu_1100 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D Pyrfu_0594 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D Pyrfu_0996 histone deacetylase superfamily K04768 acuC; acetoin utilization protein AcuC C 99982 Energy metabolism D Pyrfu_1087 ferredoxin K05337 fer; ferredoxin D Pyrfu_1330 putative nitrate reductase, subunit G K02573 napG; ferredoxin-type protein NapG D Pyrfu_1329 polyferredoxin K02574 napH; ferredoxin-type protein NapH C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism C 99987 Cofactor metabolism D Pyrfu_0805 hypothetical protein K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D Pyrfu_1020 transcriptional regulator, XRE family K03627 MBF1; putative transcription factor D Pyrfu_0960 DNA-binding protein Alba K03622 ssh10b; archaea-specific DNA-binding protein D Pyrfu_0964 Alba, DNA/RNA-binding protein K03622 ssh10b; archaea-specific DNA-binding protein D Pyrfu_0217 Like-Sm ribonucleoprotein core K04796 RUXX; small nuclear ribonucleoprotein D Pyrfu_0152 Like-Sm ribonucleoprotein core K04796 RUXX; small nuclear ribonucleoprotein D Pyrfu_1327 hypothetical protein K07743 K07743; transcriptional regulator D Pyrfu_1439 putative signal transduction protein with CBS domains K07744 K07744; transcriptional regulator D Pyrfu_1413 hypothetical protein K07745 K07745; transcriptional regulator C 99974 Translation D Pyrfu_0169 protein of unknown function DUF655 K07572 K07572; putative nucleotide binding protein D Pyrfu_1455 RNA-metabolising metallo-beta-lactamase K07577 K07577; putative mRNA 3-end processing factor D Pyrfu_1071 hypothetical protein K07577 K07577; putative mRNA 3-end processing factor D Pyrfu_0175 methyltransferase K07579 K07579; putative methylase D Pyrfu_0113 protein of unknown function DUF1610 K07580 K07580; Zn-ribbon RNA-binding protein D Pyrfu_0825 protein of unknown function DUF54 K07581 K07581; RNA-binding protein C 99975 Protein processing D Pyrfu_1396 hydrogenase assembly chaperone hypC/hupF K04653 hypC; hydrogenase expression/formation protein HypC D Pyrfu_0730 hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D Pyrfu_0696 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D Pyrfu_0556 AIR synthase related protein domain protein K04655 hypE; hydrogenase expression/formation protein HypE D Pyrfu_1767 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF D Pyrfu_0096 PUA domain containing protein K07398 K07398; conserved protein with predicted RNA binding PUA domain D Pyrfu_1728 protein of unknown function DUF107 K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D Pyrfu_1405 TIP49 domain-containing protein K07472 TIP49; TBP-interacting protein D Pyrfu_0131 Translin K07477 K07477; translin C 99979 Viral proteins C 99998 Others B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Pyrfu_0392 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family C 99978 Cell growth D Pyrfu_1512 protein of unknown function DUF95 transmembrane K06384 spoIIM; stage II sporulation protein M C 99993 Cell motility D Pyrfu_0768 hypothetical protein K23255 pilA; archaeal type IV pilus assembly protein PilA C 99995 Signaling proteins D Pyrfu_0281 carbon starvation protein CstA K06200 cstA; carbon starvation protein D Pyrfu_0232 Thr/Ser protein kinase K07176 K07176; putative serine/threonine protein kinase D Pyrfu_0088 DNA-binding TFAR19-related protein K06875 PDCD5; programmed cell death protein 5 C 99992 Structural proteins C 99994 Others D Pyrfu_1315 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein D Pyrfu_1520 CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D Pyrfu_1261 hemerythrin-like metal-binding protein K07216 hr; hemerythrin B B 09194 Poorly characterized C 99996 General function prediction only D Pyrfu_1725 PilT protein domain protein K06865 K06865; ATPase D Pyrfu_1491 ZPR1-related zinc finger protein K06874 K06874; zinc finger protein D Pyrfu_0398 DEAD/DEAH box helicase domain protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein D Pyrfu_0035 DEAD/DEAH box helicase domain protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein D Pyrfu_1970 methionyl-tRNA synthetase, beta subunit K06878 K06878; tRNA-binding protein D Pyrfu_0743 HAD-superfamily hydrolase, subfamily IA, variant 3 K07025 K07025; putative hydrolase of the HAD superfamily D Pyrfu_1738 HAD-superfamily hydrolase, subfamily IA, variant 1 K07025 K07025; putative hydrolase of the HAD superfamily D Pyrfu_1442 SufBD protein K09014 sufB; Fe-S cluster assembly protein SufB D Pyrfu_0346 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein D Pyrfu_1508 TatD-related deoxyribonuclease K07049 K07049; TatD-related deoxyribonuclease D Pyrfu_1914 phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase D Pyrfu_0887 Sjogrens syndrome scleroderma autoantigen 1 K07143 K07143; UPF0148 protein D Pyrfu_1961 protein of unknown function DUF373 K08975 K08975; putative membrane protein D Pyrfu_1563 hypothetical protein K08979 K08979; putative membrane protein C 99997 Function unknown D Pyrfu_0097 hypothetical protein K06869 K06869; uncharacterized protein D Pyrfu_1840 hypothetical protein K06869 K06869; uncharacterized protein D Pyrfu_0409 serine protease K06870 K06870; uncharacterized protein D Pyrfu_0138 hypothetical protein K06870 K06870; uncharacterized protein D Pyrfu_0878 metal dependent phosphohydrolase K06885 K06885; uncharacterized protein D Pyrfu_0487 AAA ATPase K06921 K06921; uncharacterized protein D Pyrfu_0644 hypothetical protein K06921 K06921; uncharacterized protein D Pyrfu_1160 ATPase K06921 K06921; uncharacterized protein D Pyrfu_1210 DUF234 DEXX-box ATPase K06921 K06921; uncharacterized protein D Pyrfu_1318 protein of unknown function DUF134 K06933 K06933; uncharacterized protein D Pyrfu_0037 Radical SAM domain protein K06935 K06935; uncharacterized protein D Pyrfu_0898 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Pyrfu_1657 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Pyrfu_1576 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Pyrfu_1453 phosphoesterase K06953 K06953; uncharacterized protein D Pyrfu_1342 photosystem I assembly BtpA K06971 K06971; uncharacterized protein D Pyrfu_1220 hypothetical protein K06983 K06983; uncharacterized protein D Pyrfu_0087 4-vinyl reductase 4VR K07013 K07013; uncharacterized protein D Pyrfu_0617 hypothetical protein K07022 K07022; uncharacterized protein D Pyrfu_0095 hypothetical protein K07022 K07022; uncharacterized protein D Pyrfu_0215 KH-domain/beta-lactamase-domain protein K07041 K07041; uncharacterized protein D Pyrfu_1131 TatD-related deoxyribonuclease K07051 K07051; uncharacterized protein D Pyrfu_0451 PilT protein domain protein K07064 K07064; uncharacterized protein D Pyrfu_1834 PilT protein domain protein K07064 K07064; uncharacterized protein D Pyrfu_0241 PilT protein domain protein K07064 K07064; uncharacterized protein D Pyrfu_1195 PilT protein domain protein K07064 K07064; uncharacterized protein D Pyrfu_0418 hypothetical protein K07064 K07064; uncharacterized protein D Pyrfu_0621 PilT protein domain protein K07064 K07064; uncharacterized protein D Pyrfu_0610 PilT protein domain protein K07065 K07065; uncharacterized protein D Pyrfu_1133 PilT protein domain protein K07065 K07065; uncharacterized protein D Pyrfu_0697 protein of unknown function DUF35 K07068 K07068; uncharacterized protein D Pyrfu_1892 DNA polymerase beta domain protein region K07073 K07073; uncharacterized protein D Pyrfu_1038 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pyrfu_1142 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pyrfu_0042 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D Pyrfu_1459 metallophosphoesterase K07096 K07096; uncharacterized protein D Pyrfu_1867 phosphoesterase DHHA1 K07097 K07097; uncharacterized protein D Pyrfu_0040 hypothetical protein K07097 K07097; uncharacterized protein D Pyrfu_0560 phosphohydrolase (DHH superfamily)-like protein K07097 K07097; uncharacterized protein D Pyrfu_0147 phosphoribosyltransferase K07101 K07101; uncharacterized protein D Pyrfu_1761 phosphoribosyltransferase K07101 K07101; uncharacterized protein D Pyrfu_0955 hypothetical protein K07108 K07108; uncharacterized protein D Pyrfu_0673 transcriptional regulator, XRE family K07108 K07108; uncharacterized protein D Pyrfu_1555 ABC transporter-related protein K07128 K07128; uncharacterized protein D Pyrfu_1893 Radical SAM domain protein K07129 K07129; uncharacterized protein D Pyrfu_1438 Roadblock/LC7 family protein K07131 K07131; uncharacterized protein D Pyrfu_0626 t-RNA-binding domain-containing protein K07135 K07135; uncharacterized protein D Pyrfu_0891 FAD dependent oxidoreductase K07137 K07137; uncharacterized protein D Pyrfu_1573 hypothetical protein K07158 K07158; uncharacterized protein D Pyrfu_1895 protein of unknown function DUF763 K09003 K09003; uncharacterized protein D Pyrfu_0002 protein of unknown function DUF99 K09120 K09120; uncharacterized protein D Pyrfu_0407 protein of unknown function DUF82 K09122 K09122; uncharacterized protein D Pyrfu_0569 protein of unknown function DUF167 K09131 K09131; uncharacterized protein D Pyrfu_0906 protein of unknown function DUF190 K09137 K09137; uncharacterized protein D Pyrfu_1076 AMMECR1 domain protein K09141 K09141; uncharacterized protein D Pyrfu_1866 protein of unknown function DUF429 K09147 K09147; uncharacterized protein D Pyrfu_1958 hypothetical protein K09148 K09148; uncharacterized protein D Pyrfu_1928 protein of unknown function DUF432 K09149 K09149; uncharacterized protein D Pyrfu_0150 protein of unknown function DUF460 K09150 K09150; uncharacterized protein D Pyrfu_1547 protein of unknown function DUF711 K09157 K09157; uncharacterized protein D Pyrfu_0682 metal dependent phosphohydrolase K09163 K09163; uncharacterized protein D Pyrfu_1873 protein of unknown function DUF504 K09715 K09715; uncharacterized protein D Pyrfu_0860 hypothetical protein K09717 K09717; uncharacterized protein D Pyrfu_0195 protein of unknown function UPF0147 K09721 K09721; uncharacterized protein D Pyrfu_0143 protein of unknown function DUF354 K09726 K09726; uncharacterized protein D Pyrfu_1969 protein of unknown function DUF211 K09732 K09732; uncharacterized protein D Pyrfu_0044 protein of unknown function DUF54 K09736 K09736; uncharacterized protein D Pyrfu_0647 protein of unknown function DUF61 K09737 K09737; uncharacterized protein D Pyrfu_0178 protein of unknown function DUF2067 K09742 K09742; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 5, 2024