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Transcription Machinery - Pseudomonas fluorescens SBW25
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E PFLU_3138 Uncharacterized protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E PFLU_5502 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E PFLU_5534 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E PFLU_5533 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E PFLU_5994 rpoZ; DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E PFLU_5592 rpoD; RNA polymerase sigma factor (sigma-70) K03086 rpoD; RNA polymerase primary sigma factor
E PFLU_1302 rpoS; RNA polymerase sigma factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E PFLU_4802 Uncharacterized protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E PFLU_1467 algU; RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E PFLU_4538 Putative putative ECF-family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E PFLU_4613 Putative RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E PFLU_2725 Putative RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E PFLU_3349 Putative RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E PFLU_0166 Putative sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E PFLU_3631 Putative RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E PFLU_1042 fecI; Probable RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E PFLU_5627 Putative RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E PFLU_3568 Putative RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E PFLU_2787 Heme uptake regulator K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E PFLU_3749 Putative RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E PFLU_6130 Putative iron-related RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E PFLU_5777 rpoH; RNA polymerase sigma factor RpoH (RNA polymerase sigma-32 factor) K03089 rpoH; RNA polymerase sigma-32 factor
E PFLU_0882 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
E PFLU_4417 RNA polymerase sigma factor FliA (RNA polymerase sigma factor for flagellar operon) (Sigma F) (Sigma-28) K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E PFLU_1352 rapA; RNA polymerase associated protein K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
E PFLU_5254 Transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
E PFLU_5469 Transcription antitermination protein NusB (Antitermination factor NusB) K03625 nusB; transcription antitermination protein NusB
E PFLU_5539 nusG; Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E PFLU_0844 sspA; Stringent starvation protein A K03599 sspA; stringent starvation protein A
E PFLU_0845 sspB; Stringent starvation protein B K03600 sspB; stringent starvation protein B
E PFLU_3555 Histidine kinase (EC K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E PFLU_1583 Putative response regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E PFLU_3554 Putative hydrolase K19707 rsbQ; sigma-B regulation protein RsbQ
E PFLU_1468 mucA; Sigma factor negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA
E PFLU_1469 mucB; Sigma factor regulatory protein K03598 rseB; sigma-E factor negative regulatory protein RseB
D Transcription elongation factors
E PFLU_6086 RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
E PFLU_2586 Putative DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
E PFLU_5233 RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
E PFLU_5264 Transcription elongation factor GreA (Transcript cleavage factor GreA) K03624 greA; transcription elongation factor GreA
E PFLU_1696 greB; Transcription elongation factor GreB (Transcript cleavage factor GreB) K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E PFLU_5900 rho; Transcription termination factor Rho (EC (ATP-dependent helicase Rho) K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024