+D #

  Transfer RNA Biogenesis - Photobacterium profundum

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AEukaryotic type B 5'processing factors C Ribonucrease P B 3'processing and CCA adding factors C 3'processing factors D PBPRA2046 hypothetical ribonuclease K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] C CCA adding factors D PBPRA0439 SF3097; putative tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] B tRNA spricing factors C tRNA splicing endonuclease complex C tRNA splicing ligase complex C Other tRNA splicing factors B tRNA transport factors C tRNA export factors C tRNA import factors B Aminoacyl-tRNA synthetases (AARSs) C Multi-aminoacyl-tRNA synthetase complex (MSC) D PBPRA0874 putative glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PBPRA2944 PROS; putative prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PBPRA0591 ECS0029; putative Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PBPRA2885 S0661; putative leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PBPRA1168 METG; putative methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PBPRA1034 S0624; putative glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D PBPRA1064 putative arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PBPRA0570 putative lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PBPRA1112 SF1876; Putative aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] C Other AARSs D PBPRA3067 putative alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PBPRA0768 VV0771; hypothetical metal-dependent hydrolase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PBPRA2335 ASNS; putative asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PBPRA2159 THRS; putative tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PBPRA2160 PLU2669; hypothetical protein K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PBPRA2161 PLU2669; putative threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PBPRA1165 SERS; Putative seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PBPRA1098 S0465; putative cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PBPRB1226 hypothetical cysteinyl-tRNA synthetase (cysS) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PBPRA0483 ECS5235; putative Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PBPRA0764 putative histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PBPRA2156 Putative phenylalanyl-tRNA synthetase, alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PBPRA2155 Putative phenylalanyl-tRNA synthetase, beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PBPRA0533 PA0668; putative tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PBPRA0286 putative tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PBPRB0397 TRPS; putative tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C Trans-editing factors D PBPRA3488 putative D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] C AARS associated factors D PBPRA2403 Y1770; putative Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] B tRNA modification factors C Deaminases C Dihydorouridine synthases C Methylthiotransferase C Methyltransferases D PBPRA3152 VV2883; putative S-adenosylmethionine-dependent methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D PBPRA2943 ECS0197; conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] C Psudouridine synthases D PBPRA2653 Putative tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D PBPRA0614 EBIG1690; putative tRNA pseudouridine 5S synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D PBPRA3075 hypothetical hydrogenase subunit K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] C Thiolation factors D PBPRA0750 PLU3283; Putative aminotransferase NifS, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C KEOPS/EKC complex C Elongator complex C Elongator related proteins C Other tRNA modification factors D PBPRA3573 YRDC; Putative Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D PBPRA3351 VV3072; putative tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D PBPRA0002 S4013; Putative thiophene and furan oxidation protein ThdF K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D PBPRA3615 S3947; Putative glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D PBPRA2592 PLU2551; Putative selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D PBPRB1545 EF2567; Hypothetical selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] B tRNA degradation factors C TRAMP complex C Rapid tRNA decay (RTD) pathway factors D PBPRA3307 CYSQ-2; putative sulfite synthesis pathway protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D PBPRA3469 XCC2882; putative CysQ protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] C Other tRNA degradation factors # AProkaryotic type B 5'processing factors C Ribonucrease P D PBPRA0004 RNPA; Putative RNase P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] B 3'processing and CCA adding factors C 3'processing factors D PBPRA2572 SO2755; putative ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D PBPRA0198 S4086; putative ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D PBPRB0426 putative exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1] D PBPRA1076 RND; hypothetical ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D PBPRA2046 hypothetical ribonuclease K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] C CCA adding factors D PBPRA0439 SF3097; putative tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] B tRNA spricing factors C tRNA splicing endonucleases C tRNA splicing ligases C Other tRNA splicing factors D PBPRA3169 hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] B tRNA transport factors C tRNA export factors D PBPRA0640 STM4581; putative ABC transporter, ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA B Aminoacyl-tRNA synthetases (AARSs) C Multi-aminoacyl-tRNA synthetase complex (MSC) D PBPRA2885 S0661; putative leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PBPRA2944 PROS; putative prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] C Other AARSs D PBPRA0533 PA0668; putative tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PBPRA0286 putative tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PBPRB0397 TRPS; putative tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PBPRA2159 THRS; putative tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PBPRA2160 PLU2669; hypothetical protein K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PBPRA2161 PLU2669; putative threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PBPRA0591 ECS0029; putative Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PBPRA0570 putative lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PBPRA3067 putative alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PBPRA0768 VV0771; hypothetical metal-dependent hydrolase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PBPRA0483 ECS5235; putative Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PBPRA1168 METG; putative methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PBPRA1165 SERS; Putative seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PBPRA1112 SF1876; Putative aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D PBPRA0056 GLYQ; Putative glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D PBPRA0055 GLYS; Putative glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D PBPRA1098 S0465; putative cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PBPRB1226 hypothetical cysteinyl-tRNA synthetase (cysS) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PBPRA0874 putative glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PBPRA1034 S0624; putative glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D PBPRA1064 putative arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PBPRA2156 Putative phenylalanyl-tRNA synthetase, alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PBPRA2155 Putative phenylalanyl-tRNA synthetase, beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PBPRA0764 putative histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PBPRA2335 ASNS; putative asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PBPRA3172 STY0210; putative glutamyl-tRNA synthetase-relatedprotein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] C Trans-editing factors D PBPRA3488 putative D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D PBPRA3101 SCO2058; conserved hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D PBPRA2835 STY0541; hypothetical protein ybaK K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D PBPRA3128 BA5204; hypothetical DNA-binding protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D PBPRA1364 RS00184; hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D PBPRB1493 R00461; hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] B tRNA modification factors C Deaminases D PBPRA0786 STM2568; Putative cytosine/adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] C Dihydorouridine synthases D PBPRA3325 VV2972; putative NifR3/Smm1 family protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D PBPRA3410 VV3138; putative Dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D PBPRA2613 VV2126; putative regulator protein K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] C Methylthiotransferases D PBPRA2878 STY0716; putative 2-methylthioadenine synthetase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] C Methyltransferases D PBPRA1110 S2001; Conserved hypothetical protein K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D PBPRA1109 YECP; Conserved hypothetical protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D PBPRA2379 SMTA; putative SmtA protein K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D PBPRA3465 PLU4736; putative tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D PBPRA3152 VV2883; putative S-adenosylmethionine-dependent methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D PBPRA3039 TRMD; putative tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D PBPRA0002 S4013; Putative thiophene and furan oxidation protein ThdF K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D PBPRA0188 Y0104; putative tRNA methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34] D PBPRA0748 Y1332; putative RNA methyltransferase, TrmH family K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D PBPRA0229 SF3645; putative rRNA methylase, SpoU family K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D PBPRA2943 ECS0197; conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D PBPRA0563 SO0948; hypothetical O-methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D PBPRA1526 VVA0268; conserved hypothetical protein K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257] C Psudouridine synthases D PBPRA2653 Putative tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D PBPRA0614 EBIG1690; putative tRNA pseudouridine 5S synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D PBPRA2973 VV2561; putative pseudouridine synthase Rlu family protein K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D PBPRA3075 hypothetical hydrogenase subunit K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D PBPRA0408 RLUA; putative ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D PBPRA2511 NMB2018; putative pseudouridine synthase Rlu family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] C Thiolation factors D PBPRA1147 YCFB; putative (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D PBPRA1841 ECS1928; Putative ATPase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D PBPRA0060 SIRA; conserved hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D PBPRA0312 SF3361; hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D PBPRA0311 SF3362; conserved hypothetical protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C D PBPRA0310 SF3363; conserved hypothetical protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D PBPRA2191 STM1084; putative sulfite reductase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D PBPRA0752 STM2541; Putative hesB family protein K13628 iscA; iron-sulfur cluster assembly protein D PBPRA0750 PLU3283; Putative aminotransferase NifS, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PBPRA3100 STY3204; hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ C KEOPS/EKC complex C Other tRNA modification factors D PBPRA3615 S3947; Putative glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D PBPRA3351 VV3072; putative tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D PBPRA2472 STY4809; putative tRNA-(MS[2]IO[6]A)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69] D PBPRA2659 hypothetical peptidase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D PBPRA0742 QUEA; putative S-adenosylmethionine:tRNAribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D PBPRA0968 ECS0498; putative exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D PBPRA2333 STY3080; putative organic radical activating enzymes K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D PBPRA2982 T2876; conserved hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D PBPRA3356 YJES; putative iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D PBPRA2592 PLU2551; Putative selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D PBPRB1545 EF2567; Hypothetical selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D PBPRA2591 Z0657; hypothetical ATPase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D PBPRA0743 TGT; Putative queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D PBPRA0810 Putative thiamin biosynthesis protein, ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PBPRA2951 SF0178; hypothetical cell cycle protein MesJ K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D PBPRB2023 conserved hypothetical protein K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] D PBPRA1071 YEAZ; Conserved hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D PBPRA3573 YRDC; Putative Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D PBPRA0434 SF3105; putative O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D PBPRA3354 Y0626; putative nucleotide-binding protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D PBPRA2993 Z4129; putative HesA/MoeB/ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase B tRNA degradation factors C PBPRA3341 STM4368; putative Exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] C PBPRA0616 C3920; putative polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024