+D GENES KO
#
KEGG Orthology (KO) - Riemerella anatipestifer RA-GD
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:rar00010]
D RIA_0638 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RIA_0867 Transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D RIA_1485 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RIA_1658 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D RIA_1635 Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RIA_1311 Fructose/tagatose bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RIA_2020 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RIA_1659 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RIA_1132 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RIA_2131 Phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D RIA_1365 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RIA_1257 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RIA_0433 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RIA_1663 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RIA_0434 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, related enzyme K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RIA_1584 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RIA_1194 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RIA_1566 Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RIA_1121 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:rar00020]
D RIA_1364 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RIA_0372 Aconitase A K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RIA_2091 Monomeric isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RIA_1864 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RIA_1865 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, related enzyme K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RIA_1584 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RIA_1643 Succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RIA_0618 Succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RIA_1466 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RIA_1467 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RIA_1465 putative succinate dehydrogenase/fumarate reductase, cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RIA_1625 Malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RIA_1121 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D RIA_0433 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RIA_1663 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RIA_0434 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, related enzyme K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:rar00030]
D RIA_1485 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RIA_1573 Pentose-5-phosphate-3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RIA_1909 Transketolase, C-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RIA_1919 Transketolase, N-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RIA_0085 Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D RIA_1056 rpiB; RpiB K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RIA_0435 Deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D RIA_1558 Sugar kinase, ribokinase family K00852 rbsK; ribokinase [EC:2.7.1.15]
D RIA_1566 Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RIA_0962 Phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RIA_1311 Fructose/tagatose bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RIA_1635 Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RIA_1658 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions
D RIA_1573 Pentose-5-phosphate-3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:rar00051]
D RIA_1243 Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RIA_1116 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RIA_0959 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D RIA_0787 Predicted oxidoreductases (aryl-alcohol dehydrogenases-like protein) K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D RIA_1658 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D RIA_1635 Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RIA_1311 Fructose/tagatose bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RIA_2020 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RIA_1056 rpiB; RpiB K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:rar00052]
D RIA_1893 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RIA_1566 Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RIA_0638 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RIA_0867 Transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D RIA_0774 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D RIA_1658 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00053 Ascorbate and aldarate metabolism [PATH:rar00053]
D RIA_0787 Predicted oxidoreductases (aryl-alcohol dehydrogenases-like protein) K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D RIA_0873 Nucleoside-diphosphate-sugar epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D RIA_1194 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:rar00500]
D RIA_0545 Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D RIA_0120 putative alpha-glucosidase K21574 susB; glucan 1,4-alpha-glucosidase [EC:3.2.1.3]
D RIA_1566 Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RIA_0638 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RIA_0867 Transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D RIA_1485 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rar00520]
D RIA_0752 Beta-glucosidase-related glycosidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RIA_0543 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RIA_0800 Protein kinase-like domain K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D RIA_0878 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D RIA_1078 UDP-N-acetylglucosamine enolpyruvyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RIA_1071 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RIA_1052 Oxidoreductase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D RIA_1892 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D RIA_1491 Nucleoside-diphosphate-sugar epimerase K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-]
D RIA_1493 UDP-N-acetyl-D-mannosaminuronate dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D RIA_0638 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RIA_0867 Transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D RIA_1566 Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RIA_1893 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RIA_0774 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D RIA_0873 Nucleoside-diphosphate-sugar epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D RIA_1485 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RIA_1243 Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RIA_1116 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RIA_0959 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
C 00620 Pyruvate metabolism [PATH:rar00620]
D RIA_0433 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RIA_1663 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RIA_0434 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, related enzyme K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RIA_1584 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RIA_1257 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RIA_1397 Acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RIA_1235 Biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RIA_1236 Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RIA_1312 Acetyl-CoA carboxylase beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RIA_1194 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RIA_1070 Zn-dependent hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D RIA_0902 Zn-dependent hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D RIA_1482 Putative intracellular protease/amidase K05523 hchA; D-lactate dehydratase / protein deglycase [EC:4.2.1.130 3.5.1.124]
D RIA_0738 Malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D RIA_1625 Malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RIA_1953 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RIA_1121 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D RIA_1553 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rar00630]
D RIA_1625 Malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RIA_1364 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RIA_0372 Aconitase A K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RIA_1553 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RIA_0786 Catalase K03781 katE; catalase [EC:1.11.1.6]
D RIA_0945 Glutamine synthetase, catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RIA_1486 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RIA_1541 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RIA_2132 Glycine cleavage system T protein (aminomethyltransferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RIA_1584 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RIA_0669 Glycine cleavage system H protein (lipoate-binding) K02437 gcvH; glycine cleavage system H protein
C 00640 Propanoate metabolism [PATH:rar00640]
D RIA_1891 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D RIA_1584 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RIA_1397 Acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RIA_1235 Biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RIA_1236 Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RIA_1312 Acetyl-CoA carboxylase beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RIA_0618 Succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RIA_1643 Succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RIA_1880 Uncharacterized oxidoreductase, Fe-dependent alcohol dehydrogenase family K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:rar00650]
D RIA_1553 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RIA_2041 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RIA_0081 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D RIA_0788 Enoyl-CoA hydratase/carnithine racemase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D RIA_1466 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RIA_1467 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RIA_1465 putative succinate dehydrogenase/fumarate reductase, cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RIA_1258 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RIA_0835 Isopropylmalate/homocitrate/citramalate synthase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D RIA_1955 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RIA_1954 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
C 00660 C5-Branched dibasic acid metabolism
D RIA_0618 Succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RIA_1643 Succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00562 Inositol phosphate metabolism [PATH:rar00562]
D RIA_0728 phyL; PhyL K01083 E3.1.3.8; 3-phytase [EC:3.1.3.8]
D RIA_2020 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:rar00190]
D RIA_1522 NADH:ubiquinone oxidoreductase subunit 3 (chain A) K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D RIA_1523 NADH:ubiquinone oxidoreductase 20 kD subunit related Fe-S oxidoreductases K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D RIA_1524 NADH:ubiquinone oxidoreductase 27 kD subunit K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D RIA_1525 NADH:ubiquinone oxidoreductase 49 kD subunit 7 K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D RIA_1526 NADH:ubiquinone oxidoreductase 24 kD subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D RIA_1527 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D RIA_1529 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D RIA_1530 NADH:ubiquinone oxidoreductase subunit 1 (chain H) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D RIA_1531 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D RIA_1532 NADH:ubiquinone oxidoreductase subunit 6 (chain J) K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D RIA_1533 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D RIA_1534 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D RIA_1535 NADH:ubiquinone oxidoreductase subunit 4 (chain M) K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D RIA_1866 NADH dehydrogenase, FAD-containing subunit K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D RIA_1466 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RIA_1467 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RIA_1465 putative succinate dehydrogenase/fumarate reductase, cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RIA_0712 Cbb3-type cytochrome oxidase, subunit 1 K15862 ccoNO; cytochrome c oxidase cbb3-type subunit I/II [EC:7.1.1.9]
D RIA_0713 hypothetical protein K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D RIA_0714 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D RIA_0510 Cytochrome c551/c552 K08738 CYC; cytochrome c
D RIA_1996 cytochrome c551/c552 K08738 CYC; cytochrome c
D RIA_1859 F0F1-type ATP synthase, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RIA_0478 F0F1-type ATP synthase, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RIA_1860 F0F1-type ATP synthase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RIA_1858 ATPase, F1 complex, OSCP/delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RIA_0477 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RIA_1855 F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RIA_1857 F0F1-type ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RIA_1856 ATPase, F0 complex, subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RIA_1746 Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D RIA_1699 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RIA_1794 Polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D RIA_1793 Polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:rar00680]
D RIA_1486 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RIA_1365 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RIA_1953 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RIA_1625 Malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RIA_1311 Fructose/tagatose bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RIA_1635 Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RIA_1658 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D RIA_1247 Fe-S oxidoreductase K08264 hdrD; heterodisulfide reductase subunit D [EC:1.8.98.1]
D RIA_2131 Phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D RIA_0616 Phosphoglycerate dehydrogenase related dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RIA_2145 Phosphoglycerate dehydrogenase related dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RIA_2144 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00910 Nitrogen metabolism [PATH:rar00910]
D RIA_1301 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D RIA_1300 Nitrate/TMAO reductase, membrane-bound tetraheme cytochrome c subunit K15876 nrfH; cytochrome c nitrite reductase small subunit
D RIA_0512 Nitrous oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
D RIA_1416 Glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RIA_0945 Glutamine synthetase, catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RIA_1386 Carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:rar00920]
D RIA_1226 Exopolyphosphatase-related protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D RIA_1385 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RIA_0558 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RIA_0557 Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RIA_0611 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RIA_0613 Cystathionine beta-lyases/cystathionine gamma-synthase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:rar00061]
D RIA_1397 Acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RIA_1235 Biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RIA_1236 Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RIA_1312 Acetyl-CoA carboxylase beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RIA_1253 Acyl carrier protein K02078 acpP; acyl carrier protein
D RIA_0907 (acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RIA_0089 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RIA_1254 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RIA_0387 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RIA_1062 sdr; Sdr K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RIA_0263 Dehydrogenases with different specificities (short-chain alcohol dehydrogenases-like protein) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RIA_1639 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D RIA_0084 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RIA_1454 Dioxygenases, 2-nitropropane dioxygenase-like protein K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D RIA_1878 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RIA_1608 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:rar00071]
D RIA_1553 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RIA_0080 Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RIA_0081 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D RIA_1957 Acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RIA_1878 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RIA_1608 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RIA_1194 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:rar00561]
D RIA_1194 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RIA_0745 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 00564 Glycerophospholipid metabolism [PATH:rar00564]
D RIA_0601 Glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D RIA_0745 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RIA_1155 CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RIA_1712 Phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RIA_1156 Phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D RIA_1787 HAD family hydrolase K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:rar00592]
D RIA_0080 Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:rar00230]
D RIA_1566 Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RIA_0962 Phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RIA_2037 Glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RIA_2150 Phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D RIA_2100 purN; PurN K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RIA_2039 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D RIA_2101 Phosphoribosylaminoimidazole (AIR) synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D RIA_1605 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D RIA_1604 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D RIA_2038 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D RIA_1885 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RIA_2004 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RIA_1024 Adenine/guanine phosphoribosyltransferase related PRPP-binding protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RIA_1847 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D RIA_1846 5'-Nucleotidase, C-terminal protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D RIA_1047 Predicted acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RIA_1590 Purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RIA_0067 Hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D RIA_0734 IMP dehydrogenase/GMP reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RIA_0476 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RIA_0070 ham; Ham K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D RIA_2149 GMP synthase, PP-ATPase domain/subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RIA_0672 Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D RIA_1422 Ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RIA_1421 ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RIA_2138 dGTP triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D RIA_2063 Guanosine polyphosphate pyrophosphohydrolase/synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RIA_1700 putative exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RIA_2032 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RIA_0003 Deoxynucleoside kinase K15519 dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]
D RIA_1130 Adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2]
D RIA_0066 Adenylate kinase related kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RIA_0024 Transthyretin-like protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RIA_1910 Transthyretin-like protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RIA_1913 Transthyretin-like protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RIA_1089 Transthyretin-like protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RIA_1320 Urea amidohydrolase (urease) alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D RIA_1319 Urea amidohydrolase (urease) beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D RIA_1318 Urea amidohydrolase (urease) gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00240 Pyrimidine metabolism [PATH:rar00240]
D RIA_1830 Carbamoylphosphate synthase large subunit (split gene in MJ) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RIA_1827 Carbamoylphosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RIA_1826 Aspartate carbamoyltransferase, catalytic chain K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RIA_1378 Dihydroorotase related cyclic amidohydrolase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D RIA_0695 Dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D RIA_2105 Orotate phosphoribosyltransferase K13421 UMPS; uridine monophosphate synthetase [EC:2.4.2.10 4.1.1.23]
D RIA_0153 Uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D RIA_0476 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RIA_1331 Nucleotide-binding protein implicated in inhibition of septum formation K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D RIA_1470 CTP synthase (UTP-ammonia lyase) K01937 pyrG; CTP synthase [EC:6.3.4.2]
D RIA_1737 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D RIA_2026 Uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D RIA_1847 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D RIA_1846 5'-Nucleotidase, C-terminal protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D RIA_1047 Predicted acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RIA_2071 Uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D RIA_0675 Uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D RIA_1939 Cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D RIA_1422 Ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RIA_1421 ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RIA_0003 Deoxynucleoside kinase K15519 dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]
D RIA_0789 Deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D RIA_1065 Thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D RIA_1646 Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:rar00250]
D RIA_0031 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1567 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1101 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1825 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D RIA_1496 Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RIA_1501 Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RIA_2098 Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RIA_0969 Predicted amidohydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3]
D RIA_0273 Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D RIA_2032 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RIA_1885 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RIA_1826 Aspartate carbamoyltransferase, catalytic chain K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RIA_1258 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RIA_1416 Glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RIA_1551 NAD-dependent aldehyde dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D RIA_0945 Glutamine synthetase, catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RIA_1830 Carbamoylphosphate synthase large subunit (split gene in MJ) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RIA_1827 Carbamoylphosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RIA_0543 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RIA_2037 Glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:rar00260]
D RIA_1634 Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RIA_0612 Homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D RIA_1149 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RIA_1486 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RIA_2131 Phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D RIA_0616 Phosphoglycerate dehydrogenase related dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RIA_2145 Phosphoglycerate dehydrogenase related dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RIA_2144 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RIA_1765 7-keto-8-aminopelargonate synthetase related enzyme K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D RIA_1803 7-keto-8-aminopelargonate synthetase related enzyme K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D RIA_1541 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RIA_2132 Glycine cleavage system T protein (aminomethyltransferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RIA_1584 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RIA_0669 Glycine cleavage system H protein (lipoate-binding) K02437 gcvH; glycine cleavage system H protein
D RIA_1712 Phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RIA_1801 Cysteine synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D RIA_0494 L-serine deaminase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D RIA_2057 Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RIA_2055 Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:rar00270]
D RIA_1385 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RIA_0558 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RIA_0557 Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RIA_1801 Cysteine synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D RIA_0389 Methionine synthase I, cobalamin-binding domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RIA_0390 Methionine synthase I (cobalamin-dependent), methyltransferase domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RIA_1754 Methionine synthase II (cobalamin-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RIA_0784 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RIA_0519 Nucleoside phosphorylase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D RIA_0460 gaF; GaF K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D RIA_0467 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]
D RIA_1634 Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RIA_0612 Homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D RIA_1149 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RIA_0611 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RIA_0613 Cystathionine beta-lyases/cystathionine gamma-synthase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D RIA_0475 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RIA_0031 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1567 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1101 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1625 Malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RIA_0494 L-serine deaminase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D RIA_0616 Phosphoglycerate dehydrogenase related dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RIA_2145 Phosphoglycerate dehydrogenase related dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RIA_2144 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:rar00280]
D RIA_0475 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RIA_1891 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D RIA_1584 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RIA_0080 Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RIA_1194 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RIA_1462 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D RIA_0835 Isopropylmalate/homocitrate/citramalate synthase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D RIA_1955 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RIA_1954 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D RIA_1553 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rar00290]
D RIA_0475 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00300 Lysine biosynthesis [PATH:rar00300]
D RIA_1634 Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RIA_0612 Homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D RIA_1149 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RIA_0123 Dihydrodipicolinate synthase/N-acetylneuraminate lyase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RIA_0016 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D RIA_2155 Tetrahydrodipicolinate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D RIA_0566 Ornithine/acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RIA_1841 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RIA_1210 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D RIA_1185 UDP-N-acetylmuramyl tripeptide synthase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RIA_0050 UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RIA_1067 Alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
C 00310 Lysine degradation [PATH:rar00310]
D RIA_1865 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, related enzyme K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RIA_1584 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RIA_1957 Acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RIA_1553 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RIA_1258 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RIA_1194 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:rar00220]
D RIA_1320 Urea amidohydrolase (urease) alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D RIA_1319 Urea amidohydrolase (urease) beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D RIA_1318 Urea amidohydrolase (urease) gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D RIA_0945 Glutamine synthetase, catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RIA_1416 Glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RIA_0031 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1567 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1101 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_0566 Ornithine/acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:rar00330]
D RIA_0484 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D RIA_0482 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family K01480 speB; agmatinase [EC:3.5.3.11]
D RIA_1194 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RIA_1237 Ornithine/acetylornithine aminotransferase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D RIA_0393 Proline dehydrogenase K00318 PRODH; proline dehydrogenase [EC:1.5.5.2]
D RIA_1551 NAD-dependent aldehyde dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D RIA_1943 Alpha/beta hydrolase fold-1 K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D RIA_0031 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1567 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1101 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism
D RIA_1194 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:rar00350]
D RIA_0031 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1567 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1101 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1588 4-hydroxyphenylpyruvate dioxygenase related hemolysin K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D RIA_0644 Homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D RIA_1586 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D RIA_1258 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:rar00360]
D RIA_1835 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
D RIA_0674 Enoyl-CoA hydratase/carnithine racemase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D RIA_2041 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RIA_0031 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1567 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1101 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1588 4-hydroxyphenylpyruvate dioxygenase related hemolysin K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D RIA_0830 Catalase (peroxidase I) K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00380 Tryptophan metabolism [PATH:rar00380]
D RIA_1865 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, related enzyme K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RIA_1584 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RIA_1957 Acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RIA_1553 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RIA_1194 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RIA_0786 Catalase K03781 katE; catalase [EC:1.11.1.6]
D RIA_0830 Catalase (peroxidase I) K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rar00400]
D RIA_0395 3-dehydroquinate synthetase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D RIA_1041 3-dehydroquinate dehydratase II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D RIA_1772 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D RIA_1481 5-enolpyruvylshikimate-3-phosphate synthase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D RIA_1727 Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D RIA_2049 Anthranilate/para-aminobenzoate synthases component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RIA_2050 Anthranilate/para-aminobenzoate synthases component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D RIA_2051 Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D RIA_2054 Phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D RIA_2053 Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D RIA_2057 Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RIA_2055 Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RIA_1749 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase K04516 AROA1; chorismate mutase [EC:5.4.99.5]
D RIA_0275 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D RIA_1925 Prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D RIA_0031 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1567 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1101 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:rar00410]
D RIA_1734 Aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D RIA_1194 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RIA_0546 Panthothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:rar00430]
D RIA_2060 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RIA_0273 Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
C 00440 Phosphonate and phosphinate metabolism
D RIA_0462 Metal-dependent hydrolases of the beta-lactamase superfamily I K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:rar00450]
D RIA_0389 Methionine synthase I, cobalamin-binding domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RIA_0390 Methionine synthase I (cobalamin-dependent), methyltransferase domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RIA_1754 Methionine synthase II (cobalamin-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RIA_0833 Selenocysteine lyase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D RIA_1452 Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RIA_0243 Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RIA_0033 Thiol-disulfide isomerase-like thioredoxin K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RIA_1883 EMAP domain K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:rar00460]
D RIA_2060 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RIA_1825 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D RIA_1486 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:rar00470]
D RIA_1067 Alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D RIA_0609 D-alanine-D-alanine ligase related ATP-grasp enzyme K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RIA_1622 Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RIA_1187 UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RIA_1841 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RIA_1210 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:rar00480]
D RIA_2060 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RIA_1645 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RIA_1729 Di- and tripeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D RIA_2091 Monomeric isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RIA_1571 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:rar00540]
D RIA_1640 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RIA_1639 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D RIA_1638 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RIA_1642 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RIA_1518 Lipid A disaccharide synthetase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RIA_1589 Tetraacyldisaccharide-1-P 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RIA_0039 Predicted sugar phosphate isomerase involved in capsule formation K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D RIA_0266 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RIA_1332 Low specificity phosphatase (HAD superfamily) K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D RIA_1569 CMP-2-keto-3-deoxyoctulosonic acid synthetase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RIA_0856 glycosyl transferase family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RIA_1933 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RIA_0269 Predicted membrane-associated, metal-dependent hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
C 00542 O-Antigen repeat unit biosynthesis [PATH:rar00542]
D RIA_1004 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rar00541]
D RIA_1893 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RIA_0774 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D RIA_0873 Nucleoside-diphosphate-sugar epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D RIA_0761 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RIA_1510 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RIA_1509 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RIA_1508 dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RIA_1164 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D RIA_1243 Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RIA_1116 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RIA_0959 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D RIA_1493 UDP-N-acetyl-D-mannosaminuronate dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D RIA_1052 Oxidoreductase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D RIA_1892 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D RIA_1491 Nucleoside-diphosphate-sugar epimerase K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-]
C 00550 Peptidoglycan biosynthesis [PATH:rar00550]
D RIA_1078 UDP-N-acetylglucosamine enolpyruvyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RIA_1071 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RIA_1190 UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RIA_1187 UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RIA_1185 UDP-N-acetylmuramyl tripeptide synthase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RIA_0609 D-alanine-D-alanine ligase related ATP-grasp enzyme K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RIA_0050 UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RIA_1067 Alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D RIA_1159 Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RIA_0134 Uncharacterized bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RIA_1851 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RIA_1186 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RIA_1189 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RIA_0109 Membrane carboxypeptidase (penicillin-binding protein) K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RIA_1038 Membrane carboxypeptidase (penicillin-binding protein) K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RIA_0862 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RIA_1184 Cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RIA_1804 Peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RIA_0058 D-alanyl-D-alanine carboxypeptidase/endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:rar00552]
D RIA_0134 Uncharacterized bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RIA_1851 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RIA_1004 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:rar00543]
D RIA_1004 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D RIA_1382 Predicted membrane protein involved in D-alanine export K19294 algI; alginate O-acetyltransferase complex protein AlgI
D RIA_1385 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RIA_0558 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:rar00730]
D RIA_1789 Cysteine sulfinate desulfinase/cysteine desulfurase related enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RIA_1783 Thiamine monophosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D RIA_0892 Thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D RIA_2024 Predicted GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RIA_0442 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RIA_1715 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RIA_0485 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D RIA_0066 Adenylate kinase related kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:rar00740]
D RIA_0753 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RIA_0622 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RIA_0525 Pyrimidine deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RIA_1022 Riboflavin synthase beta-chain K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D RIA_1231 Riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D RIA_0479 FAD synthase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D RIA_1761 NUDIX hydrolase domain K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:rar00750]
D RIA_1731 Pyridoxamine-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D RIA_2144 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RIA_1685 Pyridoxal phosphate biosynthesis protein K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
C 00760 Nicotinate and nicotinamide metabolism [PATH:rar00760]
D RIA_0826 Nicotinic acid phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D RIA_1590 Purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RIA_1847 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D RIA_1846 5'-Nucleotidase, C-terminal protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D RIA_1047 Predicted acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RIA_1374 Nicotinic acid mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D RIA_0562 NAD synthase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D RIA_1929 Amidases, nicotinamidase-like protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D RIA_0126 NAD-dependent protein deacetylase, SIR2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D RIA_1310 Predicted sugar kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D RIA_1258 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:rar00770]
D RIA_0708 Ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D RIA_0546 Panthothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RIA_1084 Putative transcriptional regulator, Bvg accessory factor-like protein K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D RIA_0608 Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D RIA_0795 Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D RIA_1758 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D RIA_0475 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RIA_1734 Aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D RIA_1194 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:rar00780]
D RIA_1254 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RIA_0387 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RIA_1062 sdr; Sdr K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RIA_0263 Dehydrogenases with different specificities (short-chain alcohol dehydrogenases-like protein) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RIA_0084 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RIA_0384 Dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D RIA_0894 Biotin synthase related enzyme K01012 bioB; biotin synthase [EC:2.8.1.6]
D RIA_0995 Biotin/lipoate A/B protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:rar00785]
D RIA_1997 Lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D RIA_1721 Lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D RIA_1584 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RIA_0433 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RIA_1663 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RIA_0434 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, related enzyme K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RIA_1864 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RIA_1865 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, related enzyme K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RIA_1891 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D RIA_1541 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RIA_2132 Glycine cleavage system T protein (aminomethyltransferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RIA_0669 Glycine cleavage system H protein (lipoate-binding) K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:rar00790]
D RIA_0775 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D RIA_0442 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RIA_1715 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RIA_1217 putative phosphodiesterase/alkaline phosphatase D K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D RIA_0670 Dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D RIA_1679 possible 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D RIA_1738 Dihydropteroate synthase related enzyme K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D RIA_1512 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RIA_0917 Folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D RIA_0753 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RIA_0622 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RIA_1111 Anthranilate/para-aminobenzoate synthases component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D RIA_1110 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D RIA_1406 6-pyruvoyl-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
C 00670 One carbon pool by folate [PATH:rar00670]
D RIA_1512 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RIA_2074 Formyltetrahydrofolate synthetase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D RIA_1484 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RIA_1486 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RIA_2100 purN; PurN K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RIA_2004 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RIA_1623 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RIA_2132 Glycine cleavage system T protein (aminomethyltransferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RIA_0389 Methionine synthase I, cobalamin-binding domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RIA_0390 Methionine synthase I (cobalamin-dependent), methyltransferase domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RIA_1646 Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RIA_0388 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RIA_1281 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:rar00860]
D RIA_0848 Glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D RIA_0465 Glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RIA_1621 Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RIA_0849 Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D RIA_1016 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D RIA_0851 Uroporphyrinogen-III decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D RIA_1921 Coproporphyrinogen III oxidase related Fe-S oxidoreductase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D RIA_0044 Predicted membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D RIA_0486 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rar00130]
D RIA_0091 Methylase involved in ubiquinone/menaquinone biosynthesis K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D RIA_0489 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
D RIA_1135 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D RIA_1547 AMP-dependent synthetase/ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D RIA_1988 Dihydroxynaphthoic acid synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D RIA_0490 Uncharacterized protein, possibly involved in aromatic compounds catabolism K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D RIA_1987 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D RIA_1588 4-hydroxyphenylpyruvate dioxygenase related hemolysin K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:rar00900]
D RIA_1553 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RIA_0620 Hydroxymethylglutaryl-CoA reductase K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88]
D RIA_1607 diphosphomevalonate decarboxylase K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33]
D RIA_2133 Isopentenyldiphosphate isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D RIA_1785 Geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RIA_1763 Geranylgeranyl pyrophosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RIA_1159 Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D RIA_1194 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:rar00907]
D RIA_0835 Isopropylmalate/homocitrate/citramalate synthase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D RIA_0080 Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D RIA_1909 Transketolase, C-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RIA_1919 Transketolase, N-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis [PATH:rar00253]
D RIA_0365 FAD dependent oxidoreductase K18221 tetX; tetracycline 11a-monooxygenase, tetracycline resistance protein [EC:1.14.13.231]
D RIA_0369 Monooxygenase, FAD-binding protein K18221 tetX; tetracycline 11a-monooxygenase, tetracycline resistance protein [EC:1.14.13.231]
C 00523 Polyketide sugar unit biosynthesis [PATH:rar00523]
D RIA_0761 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RIA_1510 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RIA_1509 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RIA_1508 dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RIA_1164 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D RIA_0489 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D RIA_1509 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:rar00261]
D RIA_1634 Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RIA_0612 Homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D RIA_1149 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RIA_0123 Dihydrodipicolinate synthase/N-acetylneuraminate lyase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RIA_0016 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:rar00521]
D RIA_0638 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RIA_0867 Transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D RIA_1566 Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RIA_0761 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RIA_1510 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RIA_1509 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RIA_1508 dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RIA_1164 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D RIA_0638 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D RIA_0867 Transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:rar00525]
D RIA_0761 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RIA_1510 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RIA_1509 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:rar00401]
D RIA_0275 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D RIA_0031 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1567 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1101 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D RIA_2049 Anthranilate/para-aminobenzoate synthases component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RIA_2050 Anthranilate/para-aminobenzoate synthases component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D RIA_0907 (acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RIA_1062 sdr; Sdr K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RIA_0263 Dehydrogenases with different specificities (short-chain alcohol dehydrogenases-like protein) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RIA_0084 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D RIA_1253 Acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D RIA_0784 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:rar00362]
D RIA_0080 Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RIA_0081 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D RIA_1957 Acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RIA_2041 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RIA_1553 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:rar00625]
D RIA_1194 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
D RIA_0080 Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:rar00643]
D RIA_0644 Homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D RIA_1586 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
C 00791 Atrazine degradation
D RIA_1320 Urea amidohydrolase (urease) alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D RIA_1319 Urea amidohydrolase (urease) beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D RIA_1318 Urea amidohydrolase (urease) gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:rar03020]
D RIA_0681 DNA-directed RNA polymerase, beta subunit/140 kD subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RIA_0680 DNA-directed RNA polymerase, beta' subunit/160 kD subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RIA_1359 DNA-directed RNA polymerase, alpha subunit/40 kD subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:rar03010]
D RIA_2000 Ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RIA_0726 Ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RIA_1340 Ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RIA_1358 Ribosomal protein S4 related protein K02986 RP-S4; small subunit ribosomal protein S4
D RIA_1351 Ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RIA_1812 Ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RIA_0818 Ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RIA_1348 Ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RIA_0725 Ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RIA_0816 Ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RIA_1357 Ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RIA_0819 Ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RIA_1356 Ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RIA_1347 Ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RIA_1628 Ribosomal protein S15P/S13E K02956 RP-S15; small subunit ribosomal protein S15
D RIA_1619 Ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RIA_1343 Ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RIA_1813 Ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RIA_1338 Ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RIA_1371 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RIA_0703 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D RIA_0689 Ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RIA_1337 Ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RIA_1334 Ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RIA_1335 Ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RIA_1346 Ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RIA_1349 Ribosomal protein L6P/L9E K02933 RP-L6; large subunit ribosomal protein L6
D RIA_0687 Ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RIA_1814 Ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RIA_0688 Ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RIA_0690 Ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RIA_0724 Ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RIA_1344 Ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RIA_1353 Ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RIA_1341 Ribosomal protein L16/L10E K02878 RP-L16; large subunit ribosomal protein L16
D RIA_1360 Ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RIA_1350 Ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RIA_2075 Ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RIA_2042 Ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RIA_1073 Ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RIA_1339 Ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RIA_1336 Ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RIA_1345 Ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RIA_0961 Ribosomal protein L25 (general stress protein Ctc) K02897 RP-L25; large subunit ribosomal protein L25
D RIA_1074 Ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RIA_1014 Ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RIA_1342 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RIA_1352 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RIA_1478 Ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RIA_1234 Ribosomal protein L32p K02911 RP-L32; large subunit ribosomal protein L32
D RIA_1013 ribosomal protein rpL33 K02913 RP-L33; large subunit ribosomal protein L33
D RIA_1227 Ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RIA_2043 Ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RIA_0656 rrsA1; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RIA_1167 rrsA2; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RIA_1426 rrsA3; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RIA_0652 rrlA1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RIA_1170 rrlA2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RIA_1429 rrlA3; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RIA_0651 rrfA1; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RIA_1172 rrfA2; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RIA_1431 rrfA3; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:rar00970]
D RIA_0654 trnA1; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RIA_1169 trnA2; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RIA_1428 trnA3; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RIA_2029 trnA4; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RIA_1887 trnR2; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RIA_2128 trnR3; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RIA_1696 trnR1; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RIA_0972 trnN; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RIA_1792 trnD2; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RIA_1791 trnD1; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RIA_1419 trnC; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RIA_0621 trnQ; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RIA_1370 trnE1; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RIA_1372 trnE2; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RIA_0697 trnG1; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RIA_0922 trnG2; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RIA_1295 trnH; tRNA-His K14226 tRNA-His; tRNA His
D RIA_0655 trnI1; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RIA_1168 trnI2; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RIA_1427 trnI3; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RIA_0921 trnL2; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RIA_0923 trnL3; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RIA_1774 trnL4; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RIA_0463 trnL1; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RIA_1773 trnK1; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RIA_1775 trnK2; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RIA_1719 trnM2; tRNA-Met K14230 tRNA-Met; tRNA Met
D RIA_1850 trnM3; tRNA-Met K14230 tRNA-Met; tRNA Met
D RIA_1667 trnM1; tRNA-Met K14230 tRNA-Met; tRNA Met
D RIA_1632 trnF; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RIA_1695 trnP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RIA_1694 trnS2; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RIA_1824 trnS3; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RIA_0241 trnS1; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RIA_0696 trnT1; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RIA_0699 trnT2; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RIA_0693 trnW; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RIA_0698 trnY; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RIA_0918 trnV1; tRNA-Val K14237 tRNA-Val; tRNA Val
D RIA_0919 trnV2; tRNA-Val K14237 tRNA-Val; tRNA Val
D RIA_1396 Glutamyl- and glutaminyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D RIA_1840 Glutamyl- and glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D RIA_0637 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RIA_2099 Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RIA_0646 Aspartyl/asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D RIA_0834 Glycyl-tRNA synthetase (class II) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RIA_2047 Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RIA_1276 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RIA_0776 Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RIA_1883 EMAP domain K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RIA_1623 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RIA_1560 Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RIA_1286 Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RIA_1100 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RIA_2034 Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RIA_1475 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RIA_1575 Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RIA_1930 Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RIA_0550 Phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RIA_1902 EMAP domain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RIA_1601 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RIA_0954 Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:rar03060]
D RIA_1354 Ribosomal protein L15 K03076 secY; preprotein translocase subunit SecY
D RIA_0692 Protein secE/sec61-gamma protein K03073 secE; preprotein translocase subunit SecE
D RIA_2086 Preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D RIA_1922 secD_secF; SecD/SecF K12257 secDF; SecD/SecF fusion protein
D RIA_0780 yajC; YajC K03210 yajC; preprotein translocase subunit YajC
D RIA_1471 yidC; YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RIA_0871 secA; SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RIA_2012 ffh; Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RIA_0473 signal recognition particle (SRP) K01983 ffs; SRP RNA
D RIA_1011 ftsY; FtsY K03110 ftsY; fused signal recognition particle receptor
D RIA_0756 Bacterial sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA
D RIA_0757 Bacterial sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA
D RIA_0038 tatC; TatC K03118 tatC; sec-independent protein translocase protein TatC
D RIA_0017 Peptidase S24/S26A/S26B, conserved region K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RIA_1098 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:rar04122]
D RIA_1789 Cysteine sulfinate desulfinase/cysteine desulfurase related enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RIA_0930 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RIA_1037 thiF; ThiF K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
C 03050 Proteasome
C 03018 RNA degradation [PATH:rar03018]
D RIA_1365 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RIA_1627 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RIA_1881 Superfamily II DNA and RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D RIA_1821 Superfamily II DNA and RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D RIA_1057 Exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RIA_0040 Superfamily II DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RIA_1624 Superfamily II DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RIA_0731 Transcription termination factor K03628 rho; transcription termination factor Rho
D RIA_2069 Predicted HD superfamily hydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D RIA_1658 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D RIA_1810 Molecular chaperone K04043 dnaK; molecular chaperone DnaK
D RIA_1905 groEL; GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RIA_1699 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RIA_1794 Polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D RIA_1793 Polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D RIA_0373 tRNA nucleotidyltransferase/poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:rar03030]
D RIA_0898 DNA polymerase III, epsilon subunit related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RIA_1711 DNA polymerase III, epsilon subunit related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RIA_1629 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RIA_1747 DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RIA_0055 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RIA_0006 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RIA_1901 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RIA_1591 Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RIA_0289 DNA primase (bacterial type) K02316 dnaG; DNA primase [EC:2.7.7.101]
D RIA_1962 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RIA_1592 Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RIA_1472 Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RIA_2082 DNA polymerase I - 3'-5' exonuclease and polymerase domains K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RIA_0581 NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:rar03410]
D RIA_1400 Predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RIA_0472 Uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RIA_0633 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RIA_2052 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RIA_1651 Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RIA_2082 DNA polymerase I - 3'-5' exonuclease and polymerase domains K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RIA_1375 Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RIA_0581 NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:rar03420]
D RIA_0532 Transcription-repair coupling factor (superfamily II helicase) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RIA_0268 Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
D RIA_2002 Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
D RIA_0967 Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B
D RIA_0797 Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C
D RIA_2083 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RIA_2082 DNA polymerase I - 3'-5' exonuclease and polymerase domains K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RIA_0581 NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:rar03430]
D RIA_1001 Mismatch repair ATPase (MutS family) K03555 mutS; DNA mismatch repair protein MutS
D RIA_1666 Mismatch repair ATPase (MutS family) K07456 mutS2; DNA mismatch repair protein MutS2
D RIA_1145 DNA mismatch repair enzyme (predicted ATPase) K03572 mutL; DNA mismatch repair protein MutL
D RIA_2083 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RIA_1375 Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RIA_1962 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RIA_1629 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RIA_1901 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RIA_1747 DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RIA_0006 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RIA_0055 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RIA_0898 DNA polymerase III, epsilon subunit related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RIA_1711 DNA polymerase III, epsilon subunit related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RIA_0581 NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RIA_0345 Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RIA_0380 Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:rar03440]
D RIA_1375 Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RIA_1962 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RIA_1870 Recombinational DNA repair ATPase (RecF pathway) K03629 recF; DNA replication and repair protein RecF
D RIA_1849 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RIA_2088 Recombinational DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR
D RIA_1469 recA1; RecA1 K03553 recA; recombination protein RecA
D RIA_2082 DNA polymerase I - 3'-5' exonuclease and polymerase domains K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RIA_1408 Holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
D RIA_0793 Holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RIA_1413 Holliday junction resolvasome, endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RIA_1768 RecG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RIA_1629 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RIA_1901 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RIA_1747 DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RIA_0006 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RIA_0055 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RIA_0898 DNA polymerase III, epsilon subunit related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RIA_1711 DNA polymerase III, epsilon subunit related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RIA_1805 Primosomal protein N' (replication factor Y) - superfamily II helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:rar03250]
D RIA_0083 FKBP-type peptidyl-prolyl cis-trans isomerases 1 K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:rar02010]
D RIA_1245 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RIA_1614 ABC-type transport system involved in resistance to organic solvents, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RIA_1613 ABC-type polar amino acid transport system, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RIA_0603 ABC transporter, permease K09808 lolC_E; lipoprotein-releasing system permease protein
D RIA_1717 putative lipoprotein releasing system transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D RIA_1742 ABC-type antimicrobial peptide transport system, ATPase component K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RIA_0011 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D RIA_0996 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D RIA_0487 ABC-type (unclassified) transport system, ATPase component K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RIA_0517 hypothetical protein K19341 nosY; Cu-processing system permease protein
D RIA_0516 ABC-type multidrug transport system, ATPase component K19340 nosF; Cu-processing system ATP-binding protein
D RIA_0132 cell division protein K09811 ftsX; cell division transport system permease protein
D RIA_1228 Predicted ATPase involved in cell division K09812 ftsE; cell division transport system ATP-binding protein
D RIA_0733 ABC-type multidrug transport system, ATPase and permease components K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RIA_1297 ABC-type multidrug transport system, ATPase and permease components K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D RIA_0552 ABC-type multidrug transport system, ATPase and permease components K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:rar03070]
D RIA_1214 outer membrane efflux protein K12340 tolC; outer membrane protein
D RIA_1922 secD_secF; SecD/SecF K12257 secDF; SecD/SecF fusion protein
D RIA_0692 Protein secE/sec61-gamma protein K03073 secE; preprotein translocase subunit SecE
D RIA_2086 Preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D RIA_1354 Ribosomal protein L15 K03076 secY; preprotein translocase subunit SecY
D RIA_0780 yajC; YajC K03210 yajC; preprotein translocase subunit YajC
D RIA_1471 yidC; YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RIA_0871 secA; SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RIA_1011 ftsY; FtsY K03110 ftsY; fused signal recognition particle receptor
D RIA_2012 ffh; Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RIA_0756 Bacterial sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA
D RIA_0757 Bacterial sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA
D RIA_0038 tatC; TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:rar02020]
D RIA_1081 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D RIA_0535 Signal transduction response regulator, receiver region K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D RIA_0442 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RIA_1715 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RIA_1217 putative phosphodiesterase/alkaline phosphatase D K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D RIA_1284 Trypsin-like serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D RIA_0143 dnaA; DnaA K02313 dnaA; chromosomal replication initiator protein
D RIA_1219 TonB-dependent receptor plug K19611 fepA; ferric enterobactin receptor
D RIA_0945 Glutamine synthetase, catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RIA_1553 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RIA_0647 DNA-directed RNA polymerase specialized sigma subunit, sigma54-like protein K03092 rpoN; RNA polymerase sigma-54 factor
D RIA_0506 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RIA_0523 Response regulator K07720 yesN; two-component system, response regulator YesN
D RIA_0510 Cytochrome c551/c552 K08738 CYC; cytochrome c
D RIA_1996 cytochrome c551/c552 K08738 CYC; cytochrome c
D RIA_0712 Cbb3-type cytochrome oxidase, subunit 1 K15862 ccoNO; cytochrome c oxidase cbb3-type subunit I/II [EC:7.1.1.9]
D RIA_0713 hypothetical protein K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D RIA_0714 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D RIA_1214 outer membrane efflux protein K12340 tolC; outer membrane protein
D RIA_1489 periplasmic protein involved in polysaccharide export K01991 wza; polysaccharide biosynthesis/export protein
D RIA_0142 Protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D RIA_1490 ATPases involved in chromosome partitioning K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D RIA_1002 ATPases involved in chromosome partitioning K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:rar02024]
D RIA_2049 Anthranilate/para-aminobenzoate synthases component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RIA_2050 Anthranilate/para-aminobenzoate synthases component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D RIA_1878 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RIA_1608 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RIA_0506 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RIA_0753 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RIA_0525 Pyrimidine deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RIA_1117 RND efflux system outer membrane lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D RIA_1471 yidC; YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RIA_1922 secD_secF; SecD/SecF K12257 secDF; SecD/SecF fusion protein
D RIA_0692 Protein secE/sec61-gamma protein K03073 secE; preprotein translocase subunit SecE
D RIA_2086 Preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D RIA_1354 Ribosomal protein L15 K03076 secY; preprotein translocase subunit SecY
D RIA_0780 yajC; YajC K03210 yajC; preprotein translocase subunit YajC
D RIA_0871 secA; SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RIA_1011 ftsY; FtsY K03110 ftsY; fused signal recognition particle receptor
D RIA_2012 ffh; Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
D RIA_0860 Flagellar motor protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:rar02040]
D RIA_0860 Flagellar motor protein K02557 motB; chemotaxis protein MotB
D RIA_1572 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) K03086 rpoD; RNA polymerase primary sigma factor
D RIA_0647 DNA-directed RNA polymerase specialized sigma subunit, sigma54-like protein K03092 rpoN; RNA polymerase sigma-54 factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D RIA_1365 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:rar04980]
D RIA_0486 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D RIA_0389 Methionine synthase I, cobalamin-binding domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RIA_0390 Methionine synthase I (cobalamin-dependent), methyltransferase domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:rar01501]
D RIA_0752 Beta-glucosidase-related glycosidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RIA_1799 blaR1; BlaR1 K02172 blaR1; bla regulator protein blaR1
D RIA_1760 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RIA_1798 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RIA_1119 mexE; MexE K03585 acrA; membrane fusion protein, multidrug efflux system
D RIA_1215 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RIA_1117 RND efflux system outer membrane lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D RIA_1214 outer membrane efflux protein K12340 tolC; outer membrane protein
D RIA_1038 Membrane carboxypeptidase (penicillin-binding protein) K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RIA_0862 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RIA_1184 Cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RIA_2139 Beta-lactamase class D K17838 oxa; beta-lactamase class D [EC:3.5.2.6]
D RIA_0366 Beta-lactamase class D K22351 blaOXA-209; beta-lactamase class D OXA-209 [EC:3.5.2.6]
C 01502 Vancomycin resistance [PATH:rar01502]
D RIA_0609 D-alanine-D-alanine ligase related ATP-grasp enzyme K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RIA_1067 Alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D RIA_0050 UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RIA_1186 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RIA_1189 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rar01503]
D RIA_0269 Predicted membrane-associated, metal-dependent hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D RIA_1090 nlpE; NlpE K06079 cutF; copper homeostasis protein (lipoprotein)
D RIA_1369 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RIA_0234 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RIA_1284 Trypsin-like serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D RIA_0083 FKBP-type peptidyl-prolyl cis-trans isomerases 1 K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RIA_1119 mexE; MexE K03585 acrA; membrane fusion protein, multidrug efflux system
D RIA_1215 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RIA_1214 outer membrane efflux protein K12340 tolC; outer membrane protein
D RIA_1640 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:rar01000]
C 01001 Protein kinases [BR:rar01001]
D RIA_0625 pastA; PastA K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RIA_1490 ATPases involved in chromosome partitioning K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D RIA_1002 ATPases involved in chromosome partitioning K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D RIA_1081 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D RIA_0949 putative transmembrane sensor histidine kinase transcription regulator protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:rar01009]
D RIA_1658 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 01002 Peptidases and inhibitors [BR:rar01002]
D RIA_1098 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RIA_1999 Peptidase, cysteine peptidase active site protein K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D RIA_2149 GMP synthase, PP-ATPase domain/subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RIA_0908 LysM-repeat protein K19223 lytF; peptidoglycan DL-endopeptidase LytF [EC:3.4.-.-]
D RIA_0946 Cell wall-associated hydrolases (invasion-associated proteins) K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D RIA_0858 Cell wall-associated hydrolases (invasion-associated proteins) K20742 ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]
D RIA_2156 nlP_p60; NlP/P60 K13695 nlpC; probable lipoprotein NlpC
D RIA_2037 Glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RIA_0543 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RIA_1496 Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RIA_1501 Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RIA_2098 Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RIA_1482 Putative intracellular protease/amidase K05523 hchA; D-lactate dehydratase / protein deglycase [EC:4.2.1.130 3.5.1.124]
D RIA_0069 Abortive infection protein K07052 K07052; CAAX protease family protein
D RIA_1645 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RIA_1682 Zn-dependent oligopeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D RIA_1980 Zn-dependent oligopeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D RIA_1713 Predicted metalloendopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D RIA_2084 Predicted Zn-dependent peptidase K07263 pqqL; zinc protease [EC:3.4.24.-]
D RIA_2085 peptidase M16 domain-containing protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D RIA_0836 Di- and tripeptidase K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D RIA_1729 Di- and tripeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D RIA_1926 Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RIA_1552 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D RIA_0993 ATP-dependent Zn protease K08956 AFG3; AFG3 family protein [EC:3.4.24.-]
D RIA_0971 Peptidase M50, putative membrane-associated zinc metallopeptidase K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D RIA_1799 blaR1; BlaR1 K02172 blaR1; bla regulator protein blaR1
D RIA_1284 Trypsin-like serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D RIA_0019 Peptidase S8/S53, subtilisin/kexin/sedolisin K13274 wprA; cell wall-associated protease [EC:3.4.21.-]
D RIA_1402 Serine proteases of the peptidase family S9A K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D RIA_0464 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D RIA_1516 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D RIA_1015 Protease II K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D RIA_1804 Peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RIA_0058 D-alanyl-D-alanine carboxypeptidase/endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RIA_0290 Protease subunit of ATP-dependent Clp proteases K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RIA_0017 Peptidase S24/S26A/S26B, conserved region K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RIA_1943 Alpha/beta hydrolase fold-1 K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D RIA_1046 Periplasmic protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D RIA_0145 Peptidase E K05995 pepE; dipeptidase E [EC:3.4.13.21]
D RIA_1146 Uncharacterized membrane protein K07059 K07059; rhomboid family protein
D RIA_0952 Uncharacterized protein, microcin C7 resistance protein MccF-like protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D RIA_2060 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RIA_1283 Collagenase related protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D RIA_0518 Serine protease inhibitor ecotin K08276 eco; ecotin
C 01003 Glycosyltransferases [BR:rar01003]
D RIA_0999 Glycosyltransferases involved in cell wall biogenesis K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D RIA_0545 Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D RIA_0109 Membrane carboxypeptidase (penicillin-binding protein) K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RIA_1038 Membrane carboxypeptidase (penicillin-binding protein) K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RIA_1004 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:rar01005]
D RIA_1640 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RIA_1518 Lipid A disaccharide synthetase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RIA_1639 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D RIA_1638 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RIA_1642 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RIA_1589 Tetraacyldisaccharide-1-P 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RIA_1933 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RIA_0856 glycosyl transferase family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RIA_0269 Predicted membrane-associated, metal-dependent hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D RIA_0266 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RIA_1569 CMP-2-keto-3-deoxyoctulosonic acid synthetase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RIA_1332 Low specificity phosphatase (HAD superfamily) K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D RIA_0039 Predicted sugar phosphate isomerase involved in capsule formation K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D RIA_2153 glycosyl transferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D RIA_1004 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rar01011]
D RIA_1078 UDP-N-acetylglucosamine enolpyruvyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RIA_1071 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RIA_1190 UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RIA_1187 UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RIA_1185 UDP-N-acetylmuramyl tripeptide synthase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RIA_1067 Alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D RIA_0609 D-alanine-D-alanine ligase related ATP-grasp enzyme K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RIA_1622 Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RIA_0952 Uncharacterized protein, microcin C7 resistance protein MccF-like protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D RIA_1186 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RIA_1189 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RIA_0134 Uncharacterized bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RIA_1851 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RIA_1038 Membrane carboxypeptidase (penicillin-binding protein) K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RIA_0862 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RIA_1184 Cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RIA_1804 Peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RIA_0058 D-alanyl-D-alanine carboxypeptidase/endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RIA_0109 Membrane carboxypeptidase (penicillin-binding protein) K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RIA_0946 Cell wall-associated hydrolases (invasion-associated proteins) K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D RIA_0908 LysM-repeat protein K19223 lytF; peptidoglycan DL-endopeptidase LytF [EC:3.4.-.-]
D RIA_1842 Predicted periplasmic solute-binding protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D RIA_1652 Lipoprotein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RIA_1369 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RIA_0234 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RIA_1693 Negative regulator of beta-lactamase expression K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:rar01004]
D RIA_0907 (acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RIA_0089 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RIA_1254 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RIA_0387 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RIA_1062 sdr; Sdr K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RIA_0263 Dehydrogenases with different specificities (short-chain alcohol dehydrogenases-like protein) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RIA_1639 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D RIA_0084 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RIA_1454 Dioxygenases, 2-nitropropane dioxygenase-like protein K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D RIA_1878 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RIA_1608 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RIA_0745 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:rar01006]
D RIA_1785 Geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RIA_1763 Geranylgeranyl pyrophosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RIA_1159 Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RIA_1077 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RIA_1987 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D RIA_0061 4-hydroxybenzoate polyprenyltransferase related prenyltransferase K14136 K14136; decaprenyl-phosphate phosphoribosyltransferase [EC:2.4.2.45]
C 01007 Amino acid related enzymes [BR:rar01007]
D RIA_1840 Glutamyl- and glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D RIA_1396 Glutamyl- and glutaminyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D RIA_1601 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RIA_0954 Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RIA_0776 Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RIA_1475 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RIA_1883 EMAP domain K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RIA_1100 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RIA_1560 Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RIA_1286 Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RIA_2034 Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RIA_2099 Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RIA_0646 Aspartyl/asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D RIA_1930 Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RIA_0834 Glycyl-tRNA synthetase (class II) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RIA_1276 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RIA_1575 Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RIA_2047 Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RIA_0637 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RIA_0550 Phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RIA_1902 EMAP domain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RIA_0031 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1567 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1101 Aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RIA_1765 7-keto-8-aminopelargonate synthetase related enzyme K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D RIA_1803 7-keto-8-aminopelargonate synthetase related enzyme K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D RIA_1237 Ornithine/acetylornithine aminotransferase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D RIA_0566 Ornithine/acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RIA_0465 Glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RIA_0475 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RIA_2144 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RIA_1892 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:rar00194]
D RIA_0477 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RIA_0478 F0F1-type ATP synthase, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RIA_1860 F0F1-type ATP synthase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RIA_1859 F0F1-type ATP synthase, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RIA_1858 ATPase, F1 complex, OSCP/delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RIA_1857 F0F1-type ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RIA_1856 ATPase, F0 complex, subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RIA_1855 F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:rar03000]
D RIA_0785 lysR; LysR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D RIA_0138 Transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D RIA_1411 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RIA_0082 transcriptional regulator, MarR family protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D RIA_0568 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RIA_0506 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RIA_0488 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D RIA_0029 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D RIA_0966 cyclic nucleotide-binding protein K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D RIA_1483 cyclic nucleotide-binding domain-containing protein K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D RIA_0504 transcriptional regulator, BadM/Rrf2 family protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D RIA_0493 Predicted transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D RIA_0125 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D RIA_1760 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RIA_1798 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RIA_0995 Biotin/lipoate A/B protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RIA_0330 Helix-turn-helix type 3 K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D RIA_0225 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D RIA_0014 Predicted transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RIA_1730 Putative transcriptional regulator K07735 algH; putative transcriptional regulator
D RIA_1099 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D RIA_1181 mraZ; MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:rar03021]
D RIA_1359 DNA-directed RNA polymerase, alpha subunit/40 kD subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RIA_0681 DNA-directed RNA polymerase, beta subunit/140 kD subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RIA_0680 DNA-directed RNA polymerase, beta' subunit/160 kD subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RIA_1572 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) K03086 rpoD; RNA polymerase primary sigma factor
D RIA_0256 putative RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RIA_0521 putative RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RIA_1720 RNA polymerase ECF-type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RIA_0647 DNA-directed RNA polymerase specialized sigma subunit, sigma54-like protein K03092 rpoN; RNA polymerase sigma-54 factor
D RIA_0914 Transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA
D RIA_0782 nusB; NusB K03625 nusB; transcription antitermination protein NusB
D RIA_0691 Transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG
D RIA_1099 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D RIA_1674 Transcription elongation factor K03624 greA; transcription elongation factor GreA
D RIA_0731 Transcription termination factor K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:rar03019]
D RIA_0631 Ribonucleases G and E K08301 rng; ribonuclease G [EC:3.1.26.-]
D RIA_1255 dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RIA_2069 Predicted HD superfamily hydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D RIA_1057 Exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RIA_1881 Superfamily II DNA and RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D RIA_1821 Superfamily II DNA and RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D RIA_0040 Superfamily II DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RIA_1624 Superfamily II DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RIA_1365 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RIA_1627 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RIA_0731 Transcription termination factor K03628 rho; transcription termination factor Rho
D RIA_1658 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D RIA_1810 Molecular chaperone K04043 dnaK; molecular chaperone DnaK
D RIA_1905 groEL; GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RIA_1699 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RIA_1794 Polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D RIA_1793 Polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D RIA_0373 tRNA nucleotidyltransferase/poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
C 03041 Spliceosome
C 03011 Ribosome [BR:rar03011]
D RIA_2000 Ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RIA_0726 Ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RIA_1340 Ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RIA_1358 Ribosomal protein S4 related protein K02986 RP-S4; small subunit ribosomal protein S4
D RIA_1351 Ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RIA_1812 Ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RIA_0818 Ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RIA_1348 Ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RIA_0725 Ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RIA_0816 Ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RIA_1357 Ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RIA_0819 Ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RIA_1356 Ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RIA_1347 Ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RIA_1628 Ribosomal protein S15P/S13E K02956 RP-S15; small subunit ribosomal protein S15
D RIA_1619 Ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RIA_1343 Ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RIA_1813 Ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RIA_1338 Ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RIA_1371 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RIA_0703 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D RIA_0689 Ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RIA_1337 Ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RIA_1334 Ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RIA_1335 Ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RIA_1346 Ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RIA_1349 Ribosomal protein L6P/L9E K02933 RP-L6; large subunit ribosomal protein L6
D RIA_1814 Ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RIA_0688 Ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RIA_0690 Ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RIA_0687 Ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RIA_0724 Ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RIA_1344 Ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RIA_1353 Ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RIA_1341 Ribosomal protein L16/L10E K02878 RP-L16; large subunit ribosomal protein L16
D RIA_1360 Ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RIA_1350 Ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RIA_2075 Ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RIA_2042 Ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RIA_1073 Ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RIA_1339 Ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RIA_1336 Ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RIA_1345 Ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RIA_1074 Ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RIA_1014 Ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RIA_1342 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RIA_1352 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RIA_1478 Ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RIA_1234 Ribosomal protein L32p K02911 RP-L32; large subunit ribosomal protein L32
D RIA_1013 ribosomal protein rpL33 K02913 RP-L33; large subunit ribosomal protein L33
D RIA_1227 Ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RIA_2043 Ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RIA_0961 Ribosomal protein L25 (general stress protein Ctc) K02897 RP-L25; large subunit ribosomal protein L25
D RIA_0651 rrfA1; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RIA_1172 rrfA2; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RIA_1431 rrfA3; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RIA_0656 rrsA1; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RIA_1167 rrsA2; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RIA_1426 rrsA3; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RIA_0652 rrlA1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RIA_1170 rrlA2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RIA_1429 rrlA3; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:rar03009]
D RIA_1255 dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RIA_2076 GTPase K03595 era; GTPase
D RIA_0065 Predicted GTPase K03979 obgE; GTPase [EC:3.6.5.-]
D RIA_1099 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D RIA_0914 Transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA
D RIA_0782 nusB; NusB K03625 nusB; transcription antitermination protein NusB
D RIA_0691 Transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG
D RIA_0131 Dimethyladenosine transferase (rRNA methylation) K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RIA_0265 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RIA_0135 Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RIA_1895 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RIA_1182 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RIA_0141 Predicted methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RIA_1063 Predicted methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RIA_0471 rRNA methylase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RIA_0408 rRNA methylase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RIA_0248 SPOUT methyltransferase, predicted K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D RIA_1977 Predicted N6-adenine-specific DNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D RIA_1820 Predicted Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D RIA_1152 SAM-dependent methyltransferase, tRNA (uracil-5-)-methyltransferase-like protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D RIA_2095 16S rRNA uridine-516 pseudouridylate synthase related pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RIA_0626 Pseudouridylate synthase, 23S RNA-specific K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RIA_0706 Pseudouridylate synthase, 23S RNA-specific K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RIA_0150 16S rRNA uridine-516 pseudouridylate synthase related pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D RIA_1618 rimM; RimM K02860 rimM; 16S rRNA processing protein RimM
D RIA_1511 2-methylthioadenine synthetase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D RIA_0602 Ribosomal protein L11 methylase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D RIA_0631 Ribonucleases G and E K08301 rng; ribonuclease G [EC:3.1.26.-]
D RIA_0531 Resolvase, holliday junction-type, YqgF-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D RIA_2024 Predicted GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RIA_0866 Predicted GTPase K03977 engA; GTPase
D RIA_0931 hflX; HflX K03665 hflX; GTPase
D RIA_0559 sua5B; Sua5B K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RIA_2063 Guanosine polyphosphate pyrophosphohydrolase/synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RIA_1718 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D RIA_0915 Uncharacterized protein family UPF0090 K09748 rimP; ribosome maturation factor RimP
D RIA_0994 Uncharacterized plant Iojap protein-like protein K09710 ybeB; ribosome-associated protein
D RIA_1124 uncharacterized protein family UPF0054 K07042 ybeY; probable rRNA maturation factor
D RIA_0700 putative sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor
D RIA_0086 Predicted GTPase, probable translation factor K06942 ychF; ribosome-binding ATPase
D RIA_1233 Protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:rar03016]
D RIA_0071 Metal-dependent hydrolases of the beta-lactamase superfamily III K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D RIA_1575 Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RIA_1100 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RIA_1286 Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RIA_1883 EMAP domain K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RIA_1840 Glutamyl- and glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D RIA_1475 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RIA_2034 Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RIA_2099 Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RIA_0637 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RIA_0646 Aspartyl/asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D RIA_0834 Glycyl-tRNA synthetase (class II) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RIA_2047 Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RIA_1276 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RIA_0776 Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RIA_1560 Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RIA_1930 Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RIA_0550 Phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RIA_1902 EMAP domain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RIA_1601 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RIA_0954 Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RIA_1676 D-Tyr-tRNAtyr deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D RIA_1673 Diadenosine tetraphosphate (Ap4A) hydrolase-like HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RIA_1550 Predicted S-adenosylmethionine-dependent methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D RIA_0553 Pseudouridylate synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RIA_0152 Pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D RIA_1789 Cysteine sulfinate desulfinase/cysteine desulfurase related enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RIA_0559 sua5B; Sua5B K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RIA_1077 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RIA_0028 Predicted GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D RIA_1125 gidA; GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RIA_0884 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RIA_1562 Ribonuclease P (RNase P) is a type of Ribonuclease which cleaves RNA K01978 rnpB; M1 RNA
D RIA_1396 Glutamyl- and glutaminyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D RIA_1137 Cytosine/adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D RIA_1650 tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D RIA_0888 2-methylthioadenine synthetase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RIA_1476 2-methylthioadenine synthetase K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D RIA_1867 tRNA-(guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RIA_2011 rRNA methylase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D RIA_1229 Predicted O-methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D RIA_0828 rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family
D RIA_1752 rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family
D RIA_0930 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RIA_1095 Fe-S cluster assembly scaffold protein K13628 iscA; iron-sulfur cluster assembly protein
D RIA_1819 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D RIA_1406 6-pyruvoyl-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RIA_0598 Uncharacterized Fe-S protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D RIA_0997 Queuine/archaeosine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D RIA_1274 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RIA_1328 Inactive metal-dependent proteases-like protein, putative molecular chaperone K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RIA_0136 Metal-dependent proteases with possible chaperone activity K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RIA_0272 Predicted ATPase or kinase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D RIA_0883 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D RIA_1057 Exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RIA_1627 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:rar03012]
D RIA_2070 sui1; Sui1 K03113 EIF1; translation initiation factor 1
D RIA_0913 Translation initiation factor 2 (IF-2; GTPase) K02519 infB; translation initiation factor IF-2
D RIA_2045 Translation initiation factor 3 (IF-3) K02520 infC; translation initiation factor IF-3
D RIA_1542 ATPase components of ABC transporters with duplicated ATPase domains K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D RIA_1399 Translation elongation factor Ts K02357 tsf; elongation factor Ts
D RIA_0694 GTPases - translation elongation factor K02358 tuf; elongation factor Tu
D RIA_0817 Translation elongation factors (GTPases) K02355 fusA; elongation factor G
D RIA_1207 Protein chain release factor A K02835 prfA; peptide chain release factor 1
D RIA_0154 Ribosome recycling factor K02838 frr; ribosome recycling factor
D RIA_2010 Methylase of polypeptide chain release factor K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RIA_1393 Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D RIA_1355 Translation initiation factor 1 (IF-1) K02518 infA; translation initiation factor IF-1
D RIA_1641 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) K02356 efp; elongation factor P
D RIA_0287 Protein chain release factor B K02836 prfB; peptide chain release factor 2
D RIA_1877 Peptide chain release factor RF-3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:rar03110]
D RIA_1394 ATPases with chaperone activity, ATP-binding subunit K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D RIA_1053 ATPases with chaperone activity, ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D RIA_1672 ATP-dependent protease Clp, ATPase subunit, RNA polymerase sigma factor 54, interaction K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D RIA_1810 Molecular chaperone K04043 dnaK; molecular chaperone DnaK
D RIA_1905 groEL; GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RIA_1580 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ
D RIA_1579 grpE; GrpE K03687 GRPE; molecular chaperone GrpE
D RIA_1770 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 hslR; ribosome-associated heat shock protein Hsp15
D RIA_1904 groES; GroES K04078 groES; chaperonin GroES
D RIA_1284 Trypsin-like serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D RIA_0993 ATP-dependent Zn protease K08956 AFG3; AFG3 family protein [EC:3.4.24.-]
D RIA_1855 F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RIA_1325 hypA_hybF; HypA/HybF K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D RIA_1326 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase K04652 hypB; hydrogenase nickel incorporation protein HypB
D RIA_0019 Peptidase S8/S53, subtilisin/kexin/sedolisin K13274 wprA; cell wall-associated protease [EC:3.4.21.-]
D RIA_0083 FKBP-type peptidyl-prolyl cis-trans isomerases 1 K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RIA_1244 Peptidyl-prolyl cis-trans isomerase, PpiC-type K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D RIA_0636 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D RIA_0906 Thiol-disulfide isomerase-like thioredoxin K03671 TXN; thioredoxin
D RIA_1790 thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:rar04131]
D RIA_0476 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RIA_1659 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RIA_1257 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RIA_1554 major facilitator family transporter K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:rar03032]
D RIA_1592 Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RIA_0632 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RIA_1733 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RIA_0143 dnaA; DnaA K02313 dnaA; chromosomal replication initiator protein
D RIA_1591 Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RIA_0289 DNA primase (bacterial type) K02316 dnaG; DNA primase [EC:2.7.7.101]
D RIA_1962 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RIA_1629 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RIA_1901 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RIA_0006 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RIA_0055 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RIA_0898 DNA polymerase III, epsilon subunit related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RIA_1711 DNA polymerase III, epsilon subunit related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RIA_1747 DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RIA_1472 Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RIA_2082 DNA polymerase I - 3'-5' exonuclease and polymerase domains K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RIA_0581 NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RIA_0345 Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RIA_0380 Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RIA_1965 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RIA_1963 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RIA_2064 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RIA_2066 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RIA_1009 Topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:rar03036]
D RIA_1255 dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RIA_0632 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RIA_1733 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RIA_0143 dnaA; DnaA K02313 dnaA; chromosomal replication initiator protein
D RIA_0825 DNA-binding ferritin-like protein (oxidative damage protectant) K04047 dps; starvation-inducible DNA-binding protein
D RIA_1411 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RIA_1192 ftsA; FtsA K03590 ftsA; cell division protein FtsA
D RIA_1228 Predicted ATPase involved in cell division K09812 ftsE; cell division transport system ATP-binding protein
D RIA_1184 Cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RIA_0008 DNA segregation ATPase FtsK/SpoIIIE related protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RIA_1191 conserved hypothetical protein K03589 ftsQ; cell division protein FtsQ
D RIA_1188 Bacterial cell division membrane protein K03588 ftsW; cell division protein FtsW
D RIA_0132 cell division protein K09811 ftsX; cell division transport system permease protein
D RIA_1193 Cell division GTPase K03531 ftsZ; cell division protein FtsZ
D RIA_2068 hypothetical protein K09888 zapA; cell division protein ZapA
D RIA_1369 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RIA_0234 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RIA_1119 mexE; MexE K03585 acrA; membrane fusion protein, multidrug efflux system
D RIA_1215 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RIA_0865 Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins
D RIA_0864 rod shape-determining protein K03570 mreC; rod shape-determining protein MreC
D RIA_0744 GtrA-like protein K03571 mreD; rod shape-determining protein MreD
D RIA_0861 Bacterial cell division membrane protein K05837 rodA; rod shape determining protein RodA
D RIA_0013 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D RIA_0014 Predicted transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RIA_2064 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RIA_2066 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RIA_1125 gidA; GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RIA_1895 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RIA_0790 xerD; XerD K04763 xerD; integrase/recombinase XerD
D RIA_0973 integrase K04763 xerD; integrase/recombinase XerD
D RIA_1959 Integrase, catalytic core, phage K04763 xerD; integrase/recombinase XerD
D RIA_1444 ATPases involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RIA_2126 hypothetical protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D RIA_1106 Filamentation induced by cAMP/death on curing, related protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D RIA_1178 Predicted GTPase K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:rar03400]
D RIA_1844 Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RIA_0472 Uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RIA_0633 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RIA_1400 Predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RIA_2052 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RIA_1651 Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RIA_1375 Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RIA_0581 NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RIA_2082 DNA polymerase I - 3'-5' exonuclease and polymerase domains K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RIA_0268 Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
D RIA_2002 Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
D RIA_0967 Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B
D RIA_0797 Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C
D RIA_2083 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RIA_0681 DNA-directed RNA polymerase, beta subunit/140 kD subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RIA_0680 DNA-directed RNA polymerase, beta' subunit/160 kD subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RIA_1359 DNA-directed RNA polymerase, alpha subunit/40 kD subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RIA_0532 Transcription-repair coupling factor (superfamily II helicase) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RIA_1001 Mismatch repair ATPase (MutS family) K03555 mutS; DNA mismatch repair protein MutS
D RIA_1666 Mismatch repair ATPase (MutS family) K07456 mutS2; DNA mismatch repair protein MutS2
D RIA_1145 DNA mismatch repair enzyme (predicted ATPase) K03572 mutL; DNA mismatch repair protein MutL
D RIA_1629 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RIA_1901 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RIA_0006 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RIA_0055 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RIA_0898 DNA polymerase III, epsilon subunit related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RIA_1711 DNA polymerase III, epsilon subunit related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RIA_1747 DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RIA_1962 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RIA_0345 Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RIA_0380 Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RIA_1469 recA1; RecA1 K03553 recA; recombination protein RecA
D RIA_1408 Holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
D RIA_0793 Holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RIA_1413 Holliday junction resolvasome, endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RIA_1805 Primosomal protein N' (replication factor Y) - superfamily II helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RIA_1434 Predicted ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms
D RIA_1870 Recombinational DNA repair ATPase (RecF pathway) K03629 recF; DNA replication and repair protein RecF
D RIA_1768 RecG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RIA_1849 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RIA_2088 Recombinational DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR
D RIA_0897 ATPase involved in DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N)
D RIA_1456 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D RIA_0899 Predicted ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D RIA_1965 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RIA_1963 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RIA_1009 Topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RIA_0632 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RIA_1733 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RIA_0040 Superfamily II DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RIA_1624 Superfamily II DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RIA_1468 Nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RIA_0192 DNA-damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D
D RIA_1487 putative transcriptional regulatory protein K03565 recX; regulatory protein
D RIA_1422 Ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RIA_1421 ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RIA_1226 Exopolyphosphatase-related protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:rar03029]
D RIA_0913 Translation initiation factor 2 (IF-2; GTPase) K02519 infB; translation initiation factor IF-2
D RIA_2045 Translation initiation factor 3 (IF-3) K02520 infC; translation initiation factor IF-3
D RIA_1399 Translation elongation factor Ts K02357 tsf; elongation factor Ts
D RIA_0694 GTPases - translation elongation factor K02358 tuf; elongation factor Tu
D RIA_0817 Translation elongation factors (GTPases) K02355 fusA; elongation factor G
D RIA_2076 GTPase K03595 era; GTPase
D RIA_1601 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RIA_1286 Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RIA_2099 Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RIA_0834 Glycyl-tRNA synthetase (class II) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RIA_1475 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RIA_1962 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RIA_1160 outer membrane protein K07277 SAM50; outer membrane protein insertion porin family
D RIA_1810 Molecular chaperone K04043 dnaK; molecular chaperone DnaK
D RIA_1579 grpE; GrpE K03687 GRPE; molecular chaperone GrpE
D RIA_1905 groEL; GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RIA_1904 groES; GroES K04078 groES; chaperonin GroES
D RIA_1580 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ
D RIA_1789 Cysteine sulfinate desulfinase/cysteine desulfurase related enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RIA_1453 Ferredoxin, 2Fe-2S K22071 FDX2; ferredoxin-2, mitochondrial
D RIA_0804 Thioredoxin-like protein K22074 NFU1; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
D RIA_1444 ATPases involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RIA_1471 yidC; YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:rar02000]
D RIA_0733 ABC-type multidrug transport system, ATPase and permease components K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RIA_1297 ABC-type multidrug transport system, ATPase and permease components K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D RIA_0552 ABC-type multidrug transport system, ATPase and permease components K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D RIA_0677 ATPase components of ABC transporters with duplicated ATPase domains K15738 uup; ABC transport system ATP-binding/permease protein
D RIA_1245 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RIA_1614 ABC-type transport system involved in resistance to organic solvents, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RIA_1613 ABC-type polar amino acid transport system, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RIA_1314 Periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D RIA_1315 ABC-type transporter, permease components K02015 ABC.FEV.P; iron complex transport system permease protein
D RIA_1316 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D RIA_1886 hypothetical protein K25034 btuF; cobalamin transport system substrate-binding protein
D RIA_1833 transport system permease protein K25027 btuC; cobalamin transport system permease protein
D RIA_1832 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D RIA_0011 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D RIA_0996 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D RIA_0487 ABC-type (unclassified) transport system, ATPase component K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RIA_0517 hypothetical protein K19341 nosY; Cu-processing system permease protein
D RIA_0516 ABC-type multidrug transport system, ATPase component K19340 nosF; Cu-processing system ATP-binding protein
D RIA_0043 ABC-type transport system involved in multi-copper enzyme maturation, permease component K25151 gldF; gliding motility-associated transport system permease protein
D RIA_0551 ABC-type multidrug transport system, ATPase component K25152 gldA; gliding motility-associated transport system ATP-binding protein
D RIA_0042 ABC-type uncharacterized transport system involved in gliding motility auxiliary component K25153 gldG; gliding motility-associatede transport system auxiliary component
D RIA_0603 ABC transporter, permease K09808 lolC_E; lipoprotein-releasing system permease protein
D RIA_1717 putative lipoprotein releasing system transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D RIA_1742 ABC-type antimicrobial peptide transport system, ATPase component K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RIA_0132 cell division protein K09811 ftsX; cell division transport system permease protein
D RIA_1228 Predicted ATPase involved in cell division K09812 ftsE; cell division transport system ATP-binding protein
D RIA_2093 Aminopeptidase N K01992 ABC-2.P; ABC-2 type transport system permease protein
D RIA_1581 ABC-type uncharacterized transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RIA_1035 ATPase components of ABC transporters with duplicated ATPase domains K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RIA_1087 ABC-type transport system involved in Fe-S cluster assembly, ATPase component K09013 sufC; Fe-S cluster assembly ATP-binding protein
D RIA_0286 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D RIA_0746 glucose-galactose transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease
D RIA_1853 tetA; TetA K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D RIA_1554 major facilitator family transporter K06902 UMF1; MFS transporter, UMF1 family
D RIA_1876 Kef-type K+ transport systems, predicted NAD-binding component K10716 kch; voltage-gated potassium channel
D RIA_0402 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog
D RIA_0403 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain K07114 yfbK; Ca-activated chloride channel homolog
D RIA_0283 Large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D RIA_2148 MscS mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D RIA_1684 Small-conductance mechanosensitive channel K16053 ybdG; miniconductance mechanosensitive channel
D RIA_0130 mgtE; MgtE K06213 mgtE; magnesium transporter
D RIA_0860 Flagellar motor protein K02557 motB; chemotaxis protein MotB
D RIA_1287 exbD1; ExbD1 K03561 exbB; biopolymer transport protein ExbB
D RIA_1307 exbD5; ExbD5 K03561 exbB; biopolymer transport protein ExbB
D RIA_1306 exbD4; ExbD4 K03559 exbD; biopolymer transport protein ExbD
D RIA_0124 corA; CorA K03284 corA; magnesium transporter
D RIA_0242 Integral membrane protein possibly involved in chromosome condensation K06199 crcB; fluoride exporter
D RIA_0112 conserved hypothetical protein K08994 yneE; ion channel-forming bestrophin family protein
D RIA_1861 Hemolysins related protein containing CBS domains K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RIA_2081 hypothetical protein K16079 omp31; outer membrane immunogenic protein
D RIA_0575 phosphate-selective porin O and P K07221 oprO_P; phosphate-selective porin OprO and OprP
D RIA_1680 ompA2; OmpA2 K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RIA_1681 ompA3; OmpA3 K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RIA_1204 outer membrane protein A K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RIA_0964 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein
D RIA_1219 TonB-dependent receptor plug K19611 fepA; ferric enterobactin receptor
D RIA_1439 Outer membrane receptor for Fe3+-dicitrate K16091 fecA; Fe(3+) dicitrate transport protein
D RIA_0417 TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein
D RIA_0251 TonB-dependent receptor, beta-barrel K16092 btuB; vitamin B12 transporter
D RIA_0122 putative outer membrane protein K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D RIA_0439 TonB-dependent receptor, plug K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D RIA_1702 tonB-dependent vitamin B12 receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D RIA_0855 putative TonB-dependent outer membrane receptor protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D RIA_1222 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D RIA_0649 TonB-dependent outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RIA_0678 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RIA_0578 TonB dependent receptor, putative K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RIA_0869 tonB-linked outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RIA_1317 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RIA_1656 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RIA_1843 possible TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RIA_1992 Outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system
D RIA_1214 outer membrane efflux protein K12340 tolC; outer membrane protein
D RIA_1117 RND efflux system outer membrane lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D RIA_1489 periplasmic protein involved in polysaccharide export K01991 wza; polysaccharide biosynthesis/export protein
D RIA_1160 outer membrane protein K07277 SAM50; outer membrane protein insertion porin family
D RIA_0874 yfiO; YfiO K05807 bamD; outer membrane protein assembly factor BamD
D RIA_1199 Protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB
D RIA_1741 conserved hypothetical protein K21449 ata; trimeric autotransporter adhesin
D RIA_1740 lrgA2; LrgA2 K06518 cidA; holin-like protein
D RIA_1993 Putative silver efflux pump K15726 czcA; heavy metal efflux system protein
D RIA_1800 Membrane transporter of cations and cationic drugs K11741 sugE; quaternary ammonium compound-resistance protein SugE
D RIA_1923 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain K11105 cvrA; potassium/hydrogen antiporter
D RIA_0253 Kef-type K+ transport systems, predicted NAD-binding component K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D RIA_0254 Putative NADPH-quinone reductase (modulator of drug activity B) K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D RIA_0276 Trk-type K+ transport systems, membrane component K03498 trkH; trk/ktr system potassium uptake protein
D RIA_0277 K+ transport systems, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein
D RIA_1811 eriC; EriC K03281 clcA; chloride channel protein, CIC family
D RIA_1578 Mn2+ and Fe2+ transporters of the NRAMP family K03322 mntH; manganese transport protein
D RIA_2013 Arsenite efflux pump ACR3 related permease K03325 ACR3; arsenite transporter
D RIA_0569 K+ transporter K03549 kup; KUP system potassium uptake protein
D RIA_1989 Uncharacterized membrane protein K22736 VIT; vacuolar iron transporter family protein
D RIA_0397 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein
D RIA_1188 Bacterial cell division membrane protein K03588 ftsW; cell division protein FtsW
D RIA_0012 TonB family protein K03832 tonB; periplasmic protein TonB
D RIA_1290 TonB family protein K03832 tonB; periplasmic protein TonB
D RIA_1991 hlyD; HlyD K15727 czcB; membrane fusion protein, heavy metal efflux system
D RIA_1119 mexE; MexE K03585 acrA; membrane fusion protein, multidrug efflux system
D RIA_1215 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RIA_1490 ATPases involved in chromosome partitioning K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D RIA_1002 ATPases involved in chromosome partitioning K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D RIA_0099 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D RIA_0452 ragb/susd domain-containing protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D RIA_0628 RagB/SusD domain protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D RIA_0440 ragb/susd domain-containing protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D RIA_0911 ragb/susd domain-containing protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D RIA_1409 ragb/susd domain-containing protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D RIA_0425 ragb/susd domain-containing protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D RIA_0121 hypothetical protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D RIA_0428 pnuC; PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D RIA_0928 Ferrous iron transporter, FeoA subunit K04758 feoA; ferrous iron transport protein A
D RIA_0927 Fe2+ transport system protein B K04759 feoB; ferrous iron transport protein B
D RIA_0024 Transthyretin-like protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RIA_1910 Transthyretin-like protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RIA_1913 Transthyretin-like protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RIA_1089 Transthyretin-like protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
C 02044 Secretion system [BR:rar02044]
D RIA_1214 outer membrane efflux protein K12340 tolC; outer membrane protein
D RIA_0789 Deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D RIA_1464 ComEC/Rec2-related protein K02238 comEC; competence protein ComEC
D RIA_1420 phosphoribosyltransferase K02242 comFC; competence protein ComFC
D RIA_0871 secA; SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RIA_1922 secD_secF; SecD/SecF K12257 secDF; SecD/SecF fusion protein
D RIA_0692 Protein secE/sec61-gamma protein K03073 secE; preprotein translocase subunit SecE
D RIA_2086 Preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D RIA_1354 Ribosomal protein L15 K03076 secY; preprotein translocase subunit SecY
D RIA_2012 ffh; Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RIA_1011 ftsY; FtsY K03110 ftsY; fused signal recognition particle receptor
D RIA_0780 yajC; YajC K03210 yajC; preprotein translocase subunit YajC
D RIA_1471 yidC; YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RIA_0756 Bacterial sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA
D RIA_0757 Bacterial sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA
D RIA_0038 tatC; TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:rar02042]
D RIA_1861 Hemolysins related protein containing CBS domains K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:rar02022]
D RIA_1081 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D RIA_0535 Signal transduction response regulator, receiver region K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D RIA_0949 putative transmembrane sensor histidine kinase transcription regulator protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D RIA_0948 two-component system response regulator K02477 K02477; two-component system, LytTR family, response regulator
D RIA_0523 Response regulator K07720 yesN; two-component system, response regulator YesN
C 02035 Bacterial motility proteins [BR:rar02035]
D RIA_0860 Flagellar motor protein K02557 motB; chemotaxis protein MotB
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:rar04812]
D RIA_0865 Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins
D RIA_1193 Cell division GTPase K03531 ftsZ; cell division protein FtsZ
D RIA_1192 ftsA; FtsA K03590 ftsA; cell division protein FtsA
D RIA_0013 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D RIA_0014 Predicted transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:rar04147]
D RIA_1365 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RIA_1659 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RIA_1132 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RIA_1257 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RIA_0083 FKBP-type peptidyl-prolyl cis-trans isomerases 1 K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RIA_0032 Peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D RIA_1905 groEL; GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RIA_1810 Molecular chaperone K04043 dnaK; molecular chaperone DnaK
D RIA_1485 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RIA_0464 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D RIA_1516 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D RIA_0734 IMP dehydrogenase/GMP reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RIA_0694 GTPases - translation elongation factor K02358 tuf; elongation factor Tu
D RIA_1673 Diadenosine tetraphosphate (Ap4A) hydrolase-like HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RIA_1878 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RIA_1608 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RIA_1553 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RIA_0066 Adenylate kinase related kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RIA_1024 Adenine/guanine phosphoribosyltransferase related PRPP-binding protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RIA_1586 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D RIA_1635 Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RIA_0945 Glutamine synthetase, catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RIA_1621 Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RIA_1588 4-hydroxyphenylpyruvate dioxygenase related hemolysin K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D RIA_0442 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RIA_1715 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RIA_0616 Phosphoglycerate dehydrogenase related dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RIA_2145 Phosphoglycerate dehydrogenase related dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RIA_2004 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RIA_1584 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RIA_2020 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RIA_1264 serum amyloid A protein K17310 SAA; serum amyloid A protein
C 02048 Prokaryotic defense system [BR:rar02048]
D RIA_1456 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D RIA_1457 CRISPR associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
D RIA_1455 CRISPR-associated protein, SAG0894 K09952 csn1; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-]
D RIA_0444 Type I site-specific restriction-modification system, R (restriction) subunit related helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D RIA_0445 Restriction endonuclease S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D RIA_0446 Type I restriction-modification system methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D RIA_0344 DpmII restriction endonuclease K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4]
D RIA_0741 Restriction endonuclease, type II, EcoRI K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4]
D RIA_0345 Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RIA_0380 Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RIA_0379 Adenine-specific DNA methylase K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D RIA_0343 DNA modification methylase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D RIA_0300 ATPase, AAA+ type, core K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D RIA_0316 txe_yoeB; Txe/YoeB K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D RIA_0317 Prevent-host-death protein K19159 yefM; antitoxin YefM
D RIA_0330 Helix-turn-helix type 3 K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D RIA_0226 Uncharacterized protein conserved in bacteria K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D RIA_0225 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D RIA_1193 Cell division GTPase K03531 ftsZ; cell division protein FtsZ
D RIA_0865 Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins
D RIA_2064 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RIA_2066 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RIA_1789 Cysteine sulfinate desulfinase/cysteine desulfurase related enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RIA_1707 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase related enzyme K19170 dndC; DNA sulfur modification protein DndC
D RIA_1704 hypothetical protein K19172 dndE; DNA sulfur modification protein DndE
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:rar04090]
D RIA_0464 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D RIA_1516 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
C 01504 Antimicrobial resistance genes [BR:rar01504]
D RIA_0366 Beta-lactamase class D K22351 blaOXA-209; beta-lactamase class D OXA-209 [EC:3.5.2.6]
D RIA_0364 streptomycin aminoglycoside 6-adenyltransferase K05593 aadK; aminoglycoside 6-adenylyltransferase [EC:2.7.7.-]
D RIA_1853 tetA; TetA K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D RIA_0365 FAD dependent oxidoreductase K18221 tetX; tetracycline 11a-monooxygenase, tetracycline resistance protein [EC:1.14.13.231]
D RIA_0369 Monooxygenase, FAD-binding protein K18221 tetX; tetracycline 11a-monooxygenase, tetracycline resistance protein [EC:1.14.13.231]
D RIA_0363 linF; LinF K18236 lnuB_F; lincosamide nucleotidyltransferase B/F
D RIA_1799 blaR1; BlaR1 K02172 blaR1; bla regulator protein blaR1
D RIA_1760 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RIA_1798 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RIA_1119 mexE; MexE K03585 acrA; membrane fusion protein, multidrug efflux system
D RIA_1215 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RIA_1117 RND efflux system outer membrane lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D RIA_1214 outer membrane efflux protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rar00537]
D RIA_0442 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RIA_1715 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:rar03100]
D RIA_0654 trnA1; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RIA_1169 trnA2; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RIA_1428 trnA3; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RIA_2029 trnA4; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RIA_1887 trnR2; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RIA_2128 trnR3; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RIA_1696 trnR1; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RIA_0972 trnN; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RIA_1792 trnD2; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RIA_1791 trnD1; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RIA_1419 trnC; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RIA_0621 trnQ; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RIA_1370 trnE1; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RIA_1372 trnE2; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RIA_0697 trnG1; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RIA_0922 trnG2; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RIA_1295 trnH; tRNA-His K14226 tRNA-His; tRNA His
D RIA_0655 trnI1; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RIA_1168 trnI2; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RIA_1427 trnI3; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RIA_0921 trnL2; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RIA_0923 trnL3; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RIA_1774 trnL4; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RIA_0463 trnL1; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RIA_1773 trnK1; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RIA_1775 trnK2; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RIA_1719 trnM2; tRNA-Met K14230 tRNA-Met; tRNA Met
D RIA_1850 trnM3; tRNA-Met K14230 tRNA-Met; tRNA Met
D RIA_1667 trnM1; tRNA-Met K14230 tRNA-Met; tRNA Met
D RIA_1632 trnF; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RIA_1695 trnP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RIA_1694 trnS2; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RIA_1824 trnS3; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RIA_0241 trnS1; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RIA_0696 trnT1; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RIA_0699 trnT2; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RIA_0693 trnW; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RIA_0698 trnY; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RIA_0918 trnV1; tRNA-Val K14237 tRNA-Val; tRNA Val
D RIA_0919 trnV2; tRNA-Val K14237 tRNA-Val; tRNA Val
D RIA_0656 rrsA1; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RIA_1167 rrsA2; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RIA_1426 rrsA3; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RIA_0652 rrlA1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RIA_1170 rrlA2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RIA_1429 rrlA3; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RIA_0651 rrfA1; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RIA_1172 rrfA2; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RIA_1431 rrfA3; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RIA_0473 signal recognition particle (SRP) K01983 ffs; SRP RNA
D RIA_1562 Ribonuclease P (RNase P) is a type of Ribonuclease which cleaves RNA K01978 rnpB; M1 RNA
D RIA_1224 Transfer-messenger RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D RIA_0062 FAD/FMN-containing dehydrogenase K16653 dprE1; decaprenylphospho-beta-D-ribofuranose 2-oxidase [EC:1.1.98.3]
D RIA_1176 Peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D RIA_1141 Conserved domain frequently associated with peptide methionine sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D RIA_1545 Cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D RIA_2033 Cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D RIA_1401 Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RIA_1537 Peroxiredoxin K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RIA_0522 Pirin-related protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D RIA_0792 Ferritin-like protein K02217 ftnA; ferritin [EC:1.16.3.2]
D RIA_1931 Arsenate reductase related protein, glutaredoxin family K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D RIA_1947 Protein-L-isoaspartate carboxylmethyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D RIA_0829 Histone acetyltransferase HPA2 related acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D RIA_1908 putative acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D RIA_0799 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RIA_0005 Glutamine cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]
D RIA_0926 Leu/Phe-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D RIA_0751 Glycosyltransferase K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-]
D RIA_1448 deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46]
D RIA_0282 Prolipoprotein diacylglyceryltransferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RIA_1894 Glyoxalase/bleomycin resistance protein/dioxygenase K11210 fosB; metallothiol transferase [EC:2.5.1.-]
D RIA_0502 Membrane-associated lipoprotein involved in thiamine biosynthesis K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D RIA_0144 Predicted thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RIA_0891 Acyl-ACP thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RIA_1163 methylthioribose kinase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RIA_0064 Mg-dependent DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RIA_0882 Mg-dependent DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RIA_1686 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) K01175 ybfF; esterase [EC:3.1.-.-]
D RIA_0530 N-formylmethionyl-tRNA deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RIA_1294 Uncharacterized protein, LmbE-like protein K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-]
D RIA_1367 Putative translation initiation inhibitor, yjgF family K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D RIA_0406 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RIA_0470 UDP-N-acetylmuramate-alanine ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D RIA_0837 hypothetical protein K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
C 99981 Carbohydrate metabolism
D RIA_0909 Uncharacterized conserved protein UCP012535 K22136 bshC; bacillithiol synthase
C 99982 Energy metabolism
D RIA_1282 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K05337 fer; ferredoxin
D RIA_0262 Electron transfer flavoprotein, beta subunit K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D RIA_1606 Lactoylglutathione lyase related lyase K08234 yaeR; glyoxylase I family protein
D RIA_0284 Predicted enzyme with a TIM-barrel fold K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D RIA_1735 putative transmembrane protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
D RIA_2072 predicted phosphohydrolase K22390 ACP7; acid phosphatase type 7
D RIA_1602 Predicted esterase K06999 K06999; phospholipase/carboxylesterase
D RIA_0852 conserved hypothetical protein K26958 brxA_B; bacilliredoxin
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D RIA_1979 possible barstar-like protein ribonuclease (barnase) inhibitor K03623 yhcO; ribonuclease inhibitor
D RIA_1823 Cold shock protein K03704 cspA; cold shock protein
D RIA_0194 Uncharacterized phage-encoded protein K07741 antB; anti-repressor protein
D RIA_0221 Phage anti-repressor protein K07741 antB; anti-repressor protein
D RIA_2123 Phage anti-repressor protein K07741 antB; anti-repressor protein
D RIA_1664 Transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D RIA_1903 hypothetical protein K03668 hslJ; heat shock protein HslJ
D RIA_1862 clpS; ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D RIA_1653 trigger factor K03545 tig; trigger factor
D RIA_1321 ureF1; UreF1 K03187 ureE; urease accessory protein
D RIA_1322 ureF2; UreF2 K03188 ureF; urease accessory protein
D RIA_1323 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase K03189 ureG; urease accessory protein
D RIA_1324 ureD; UreD K03190 ureD; urease accessory protein
D RIA_1203 tmRNA-binding protein K03664 smpB; SsrA-binding protein
D RIA_1782 Hydrogenase maturation factor K04655 hypE; hydrogenase expression/formation protein HypE
D RIA_0958 Predicted ATPase with chaperone activity K07391 comM; magnesium chelatase family protein
D RIA_1206 Predicted redox protein, regulator of disulfide bond formation K07397 yhfA; putative redox protein
C 99976 Replication and repair
D RIA_1743 DNA repair protein K03630 radC; DNA repair protein RadC
D RIA_0827 rmuC; RmuC K09760 rmuC; DNA recombination protein RmuC
D RIA_0951 Predicted endonuclease, archaeal Holliday junction resolvase-like protein K07460 yraN; putative endonuclease
D RIA_1415 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 smf; DNA processing protein
D RIA_0202 phage terminase, large subunit, pbsx family K06909 xtmB; phage terminase large subunit
D RIA_0280 the helicase subunit-like protein of the Holliday junction resolvase K07478 ycaJ; putative ATPase
D RIA_0722 Predicted 3'-5' exonuclease, PolB-like protein K07501 K07501; 3'-5' exonuclease
D RIA_0590 IS1 transposase K07480 insB; insertion element IS1 protein InsB
D RIA_0001 Transposase-like protein K07488 K07488; transposase
D RIA_2092 Transposase-like protein K07488 K07488; transposase
C 99979 Viral proteins
C 99998 Others
D RIA_0584 pspA_iM30; PspA/IM30 K03969 pspA; phage shock protein A
D RIA_0599 Rhodanese-like protein K03972 pspE; phage shock protein E
D RIA_0903 Rhodanese-related sulfurtransferase K03972 pspE; phage shock protein E
D RIA_0905 Rhodanese-related sulfurtransferase K03972 pspE; phage shock protein E
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D RIA_0429 Amino acid transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RIA_0147 Amino acid transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RIA_1118 Cation/multidrug efflux pump K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D RIA_1216 Cation/multidrug efflux pump K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D RIA_0437 putative proton dependent di-tripeptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D RIA_0577 Dipeptide/tripeptide permease K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D RIA_1757 Phosphate/sulphate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family
C 99978 Cell growth
D RIA_0505 Regulator of cell morphogenesis and NO signaling K07322 ytfE; regulator of cell morphogenesis and NO signaling
C 99993 Cell motility
C 99995 Signaling proteins
D RIA_2028 Predicted membrane GTPase involved in stress response K06207 typA; GTP-binding protein
D RIA_2077 Phosphate starvation-inducible protein PhoH, predicted ATPase K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D RIA_1161 ompH1; OmpH1 K06142 hlpA; outer membrane protein
D RIA_1162 ompH2; OmpH2 K06142 hlpA; outer membrane protein
D RIA_1440 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) K07273 acm; lysozyme
C 99994 Others
D RIA_1945 Membrane protein TerC, possibly involved in tellurium resistance K05794 terC; tellurite resistance protein TerC
D RIA_0515 Pectin lyase fold/virulence factor K07218 nosD; nitrous oxidase accessory protein
D RIA_0514 nosL; NosL K19342 nosL; copper chaperone NosL
B
B 09194 Poorly characterized
C 99996 General function prediction only
D RIA_1177 Predicted acyltransferase K02348 elaA; ElaA protein
D RIA_1441 transport-associated protein K04065 osmY; hyperosmotically inducible periplasmic protein
D RIA_1414 Truncated hemoglobin K06886 glbN; hemoglobin
D RIA_1123 Predicted esterase of the alpha-beta hydrolase superfamily K07001 K07001; NTE family protein
D RIA_0955 Predicted hydrolase (HAD superfamily) K07025 K07025; putative hydrolase of the HAD superfamily
D RIA_1093 ABC-type transport system involved in Fe-S cluster assembly, permease component K09014 sufB; Fe-S cluster assembly protein SufB
D RIA_1086 ABC-type transport system involved in Fe-S cluster assembly, permease component K09015 sufD; Fe-S cluster assembly protein SufD
D RIA_0249 ribonuclease BN K07058 K07058; membrane protein
D RIA_1197 Ribonuclease BN-related protein K07058 K07058; membrane protein
D RIA_1051 SufE protein probably involved in Fe-S center assembly K02426 sufE; cysteine desulfuration protein SufE
D RIA_0025 extracellular heme-binding protein K11477 glcG; glc operon protein GlcG
D RIA_1911 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol K11477 glcG; glc operon protein GlcG
D RIA_1914 Protein of unknown function DUF336 K11477 glcG; glc operon protein GlcG
D RIA_1513 lemA; LemA K03744 lemA; LemA protein
D RIA_1836 Uncharacterized membrane protein K03748 sanA; SanA protein
D RIA_1097 Uncharacterized membrane protein K03748 sanA; SanA protein
D RIA_0288 Uncharacterized membrane-associated protein K03975 dedA; membrane-associated protein
D RIA_0088 Predicted membrane protein K08972 K08972; putative membrane protein
D RIA_0481 Predicted membrane protein K08987 K08987; putative membrane protein
D RIA_1766 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism K06193 phnA; protein PhnA
D RIA_1915 Predicted membrane protein K21741 rclC; reactive chlorine resistance protein C
C 99997 Function unknown
D RIA_0106 Ankyrin repeat protein K06867 K06867; uncharacterized protein
D RIA_0498 ankyrin repeat protein K06867 K06867; uncharacterized protein
D RIA_1515 Beta-propeller domains of methanol dehydrogenase type K06872 K06872; uncharacterized protein
D RIA_1296 hypothetical protein K06884 K06884; uncharacterized protein
D RIA_1637 HD superfamily phosphohydrolase K06885 K06885; uncharacterized protein
D RIA_2141 Integral membrane protein, interacts with FtsH K06890 K06890; uncharacterized protein
D RIA_0831 Predicted Fe-S-cluster oxidoreductase K06940 K06940; uncharacterized protein
D RIA_1417 Predicted HD superfamily hydrolase K06950 K06950; uncharacterized protein
D RIA_1519 Predicted Zn-dependent protease K06973 K06973; uncharacterized protein
D RIA_0853 Acyl-CoA N-acyltransferase K06975 K06975; uncharacterized protein
D RIA_0341 Predicted hydrolase of the alpha/beta superfamily K07017 K07017; uncharacterized protein
D RIA_0358 Predicted hydrolase of the alpha/beta superfamily K07017 K07017; uncharacterized protein
D RIA_1517 Predicted nucleoside-diphosphate sugar epimerase K07071 K07071; uncharacterized protein
D RIA_0901 Protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D RIA_1990 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D RIA_0554 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D RIA_0108 Metallophosphoesterase K07098 K07098; uncharacterized protein
D RIA_0340 hypothetical protein K07126 K07126; uncharacterized protein
D RIA_1874 protein of unknown function DUF164 K07164 K07164; uncharacterized protein
D RIA_0281 hypothetical protein K08998 K08998; uncharacterized protein
D RIA_0259 hypothetical protein K08999 K08999; uncharacterized protein
D RIA_2137 hypothetical protein K09158 K09158; uncharacterized protein
D RIA_1784 hypothetical protein K09791 K09791; uncharacterized protein
D RIA_0718 hypothetical protein K09792 K09792; uncharacterized protein
D RIA_1683 Uncharacterized protein conserved in bacteria K09793 K09793; uncharacterized protein
D RIA_2027 hypothetical protein K09794 K09794; uncharacterized protein
D RIA_1593 hypothetical protein K09807 K09807; uncharacterized protein
D RIA_2112 RNA binding S1 domain protein K00243 K00243; uncharacterized protein
D RIA_2009 Uncharacterized protein conserved in bacteria K09861 K09861; uncharacterized protein
D RIA_0947 hypothetical protein K09940 K09940; uncharacterized protein
D RIA_1114 Uncharacterized protein conserved in bacteria K09954 K09954; uncharacterized protein
D RIA_1756 Phosphate transport regulator (distant PhoU-like protein) K07220 K07220; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 14, 2024