+E Ribosome biogenesis KO
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Ribosome Biogenesis - Rhizobium etli bv. mimosae IE4771
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D IE4771_CH01449 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C IE4771_CH01450 era; GTP-binding protein Era K03595 era; GTPase
C IE4771_CH04403 obg; GTPase protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C IE4771_CH02458 dksA; RNA polymerase-binding protein K06204 dksA; RNA polymerase-binding transcription factor
C IE4771_CH00133 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C IE4771_CH01578 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C IE4771_CH01725 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D IE4771_CH01508 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D IE4771_CH04444 rsmB; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D IE4771_CH00328 tRNA and rRNA cytosine-C5-methylase (Sun) protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D IE4771_CH00125 ribosomal RNA methyltransferase protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D IE4771_CH00872 rRNA methyltransferase RsmD protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D IE4771_CH00839 ribosomal RNA small subunit methyltransferase RsmE protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D IE4771_CH04457 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D IE4771_CH03118 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D IE4771_CH00343 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D IE4771_CH00953 tlyA; hemolysin protein TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D IE4771_CH01715 tRNA/rRNA methyltransferase SpoU-like protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D IE4771_CH00824 rlmE; ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D IE4771_CH04412 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D IE4771_CH00433 SAM-dependent methyltransferase protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D IE4771_CH01536 ComJ family protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D IE4771_CH04264 rlmN; ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D IE4771_CH00953 tlyA; hemolysin protein TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D IE4771_CH00952 tRNA (uracil-5-)-methyltransferase protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D IE4771_CH03680 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D IE4771_CH00871 RsuA/RluB/C/D/E/F family pseudouridylate synthase protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D IE4771_CH02376 rluC; pseudouridylate synthase ribosomal large subunit C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D IE4771_CH03613 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C IE4771_CH01967 GCN5-related N-acetyltransferase protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C IE4771_CH01970 GCN5-related N-acetyltransferase protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C IE4771_CH00416 ribosomal N-acetyltransferase protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C IE4771_CH01025 ribosomal N-acetyltransferase protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C IE4771_CH04294 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C IE4771_PC00112 YcaO-like protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C IE4771_CH03089 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C IE4771_CH01449 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C IE4771_CH01701 ribonuclease E/G protein K08300 rne; ribonuclease E [EC:3.1.26.12]
C IE4771_CH01963 holliday junction resolvase protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C IE4771_CH02281 DEAD/DEAH box type DNA/RNA helicase protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C IE4771_CH01450 era; GTP-binding protein Era K03595 era; GTPase
C IE4771_CH03369 der; GTP-binding protein Der K03977 engA; GTPase
C IE4771_CH04403 obg; GTPase protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
C IE4771_CH02111 hflX; GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C IE4771_PA00101 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C IE4771_CH00941 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C IE4771_CH01444 rsh; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C IE4771_CH00130 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C IE4771_CH00134 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C IE4771_CH04411 oligomerization domain-containing protein K09710 ybeB; ribosome-associated protein
C IE4771_CH00411 rRNA maturation factor protein K07042 ybeY; probable rRNA maturation factor
C IE4771_CH00444 sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C IE4771_CH03288 engD; GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024