+E Transcription factors KO
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Transcription Factors - Mediterraneibacter gnavus
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D RGna_00255 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RGna_00380 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RGna_01805 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
C LysR family
D RGna_14160 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D RGna_04945 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D RGna_09835 spoIIID; sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
C LacI family
D RGna_12260 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RGna_13255 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RGna_15185 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RGna_00710 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RGna_04585 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RGna_10485 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RGna_11325 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RGna_14800 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D RGna_08550 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D RGna_16130 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D RGna_06785 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
C GntR family
D RGna_16090 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D RGna_05430 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D RGna_06915 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D RGna_06920 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D RGna_17155 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D RGna_04665 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D RGna_01190 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D RGna_07435 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D RGna_10025 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D RGna_07355 TetR/AcrR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
C Lrp/AsnC family
C LuxR family
C MarR family
D RGna_13800 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D RGna_08335 MerR family transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
C Fur family
D RGna_15615 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RGna_16905 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
D RGna_15165 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D RGna_03450 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RGna_07660 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RGna_07585 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D RGna_04755 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D RGna_00990 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D RGna_10185 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D RGna_14845 transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D RGna_11380 transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D RGna_01690 ArsR family transcriptional regulator K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
C XRE family
C PadR family
D RGna_12370 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D RGna_06820 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D RGna_07515 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D RGna_16900 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D RGna_07800 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D RGna_02080 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RGna_12860 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RGna_14185 transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D RGna_01620 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D RGna_09040 PRD domain-containing protein K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
D RGna_03230 CdaR family transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D RGna_07480 CdaR family transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D RGna_10705 PucR family transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D RGna_16220 molybdenum transporter K02019 modE; molybdate transport system regulatory protein
D RGna_01465 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D RGna_15925 GTP-sensing pleiotropic transcriptional regulator CodY K03706 codY; transcriptional pleiotropic repressor
D RGna_13790 transcriptional regulator K07727 K07727; putative transcriptional regulator
D RGna_16250 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator
D RGna_01135 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator
D RGna_02460 Cro/Cl family transcriptional regulator K07727 K07727; putative transcriptional regulator
D RGna_02635 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator
D RGna_02655 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
D RGna_14465 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D RGna_07970 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D RGna_10650 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D RGna_04440 transcription antiterminator BglG K03480 glcT; transcriptional antiterminator
D RGna_14550 PRD domain-containing protein K03491 licR; probable licABCH operon transcriptional regulator
C Others
D RGna_05450 metal-sensitive transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D RGna_05930 spoVT; stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D RGna_13325 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RGna_13740 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RGna_15745 DUF3850 domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RGna_16955 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RGna_11500 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RGna_06110 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator
D RGna_04110 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D RGna_00760 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D RGna_07500 PspC domain-containing protein K03973 pspC; phage shock protein C
D RGna_13670 transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D RGna_05095 transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0