+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Rattus norvegicus (rat)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 291534 Rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 313131 Rngtt; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 171150 Cdk7; cyclin-dependent kinase 7 isoform 1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 309656 Cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 292016 Cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 293058 Ramac; RNA guanine-N7 methyltransferase activating subunit K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 298075 Ncbp1; nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 689116 Ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 291877 Nudt21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 299811 Cpsf6; cleavage and polyadenylation specificity factor subunit 6 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 365407 Cpsf7; cleavage and polyadenylation specificity factor subunit 7 isoform 2 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 311166 Clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 361605 Pcf11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 366952 Cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 299256 Cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 298916 Cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 304277 Cpsf4; cleavage and polyadenylation specificity factor subunit 4 isoform 1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 100360200 Cpsf4l2; cleavage and polyadenylation specificity factor subunit 4-like K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 289582 Fip1l1; pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 307524 Wdr33; pre-mRNA 3' end processing protein WDR33 K15542 PFS2; polyadenylation factor subunit 2
E 686295 Wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 24668 Ppp1ca; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 24669 Ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit isoform 1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 25594 Ppp1cb; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 298681 Ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 311670 Cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 683927 Cstf2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 309338 Cstf2t; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 362178 Cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 292683 Sympk; symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 171365 Snrpb; small nuclear ribonucleoprotein-associated protein B K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 687711 Snrpd3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 100360682 Snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 100362099 Snrpepl2; small nuclear ribonucleoprotein polypeptide E like 2 K11097 SNRPE; small nuclear ribonucleoprotein E
E 120098617 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 103691953 Snrpel3; small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 108350623 small nuclear ribonucleoprotein F-like K11098 SNRPF; small nuclear ribonucleoprotein F
E 680737 Snrpf; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 687679 Snrpgl1; small nuclear ribonucleoprotein polypeptide G like 1 K11099 SNRPG; small nuclear ribonucleoprotein G
E 681031 Snrpg; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 120100604 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 120099778 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 366468 Lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 501688 Lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 299256 Cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 298916 Cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 683927 Cstf2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 309338 Cstf2t; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 292683 Sympk; symplekin K06100 SYMPK; symplekin
E 681062 Slbp; histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein
E 313128 Casp8ap2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 287608 Supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 308472 Supt5h; transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 361035 Mettl3; N6-adenosine-methyltransferase catalytic subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 295428 Mettl14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 316731 Mettl4; N(6)-adenine-specific methyltransferase METTL4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 499020 Wtap; pre-mRNA-splicing regulator WTAP isoform a K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 313061 Virma; protein virilizer homolog K22910 VIRMA; protein virilizer
E 315988 Rbm15b; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 684233 Rbm15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 305955 Zc3h13; zinc finger CCCH domain-containing protein 13 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 314028 Cbll1; E3 ubiquitin-protein ligase Hakai isoform 1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 305586 Papolg; poly(A) polymerase gamma K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 314417 Papola; poly(A) polymerase alpha K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 304300 Papolb; poly(A) polymerase beta K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 361878 Tent2; poly(A) RNA polymerase GLD2 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 499314 Tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 64557 Bard1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 306137 Rbm26; RNA-binding protein 26 K13192 RBM26; RNA-binding protein 26
E 291905 Fto; alpha-ketoglutarate-dependent dioxygenase FTO K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 303193 Alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 298648 Tardbp; TAR DNA-binding protein 43 isoform 2 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 287595 Dhx40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 689197 Kin; DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 502633 Mettl8; tRNA N(3)-methylcytidine methyltransferase METTL8, mitochondrial isoform 1 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 287054 Mettl22; methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 313019 Tent5b; terminal nucleotidyltransferase 5B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 300870 Tent5a; terminal nucleotidyltransferase 5A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 310721 Tent5c; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 302368 Tent5d; terminal nucleotidyltransferase 5D K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 192359 Zc3h14; zinc finger CCCH domain-containing protein 14 isoform 1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 686980 Srrt; serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 295284 Rbm8a; RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E 298385 Magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 690303 Magohb; protein mago nashi homolog 2 K12877 MAGOH; protein mago nashi
E 114612 Ddx39b; spliceosome RNA helicase Ddx39b K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 688288 Eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 297458 Ccdc174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 259170 Casc3; protein CASC3 K14323 CASC3; protein CASC3
E 290284 Sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 368070 Pnn; pinin K13114 PNN; pinin
E 305884 Acin1; apoptotic chromatin condensation inducer in the nucleus K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 287113 Rnps1; RNA-binding protein with serine-rich domain 1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 688526 Rnps1l1; RNA-binding protein with serine-rich domain 1-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 313620 Srrm1; serine/arginine repetitive matrix protein 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 291797 Thoc1; THO complex subunit 1 isoform 2 K12878 THOC1; THO complex subunit 1
E 302729 Da2-19; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 313308 Thoc2; THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 679894 Thoc2l; similar to THO complex subunit 2 (Tho2) K12879 THOC2; THO complex subunit 2
E 290519 Thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 360972 Thoc5; THO complex subunit 5 homolog isoform 1 K13174 THOC5; THO complex subunit 5
E 79227 Thoc6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 305714 Thoc7; THO complex subunit 7 homolog isoform 1 K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 361182 Pcid2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 680532 Sem1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 685258 Eny2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 84593 Cetn2; centrin-2 isoform 1 K10840 CETN2; centrin-2
E 170895 Cetn3; centrin-3 K16466 CETN3; centrin-3
E 294339 Mcm3ap; germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 304862 Tpr; nucleoprotein TPR K09291 TPR; nucleoprotein TPR
E 362281 Rae1; mRNA export factor K14298 RAE1; mRNA export factor
E 297522 Sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 299706 Nup37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 287830 Nup85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 683983 Nup43; nucleoporin Nup43 isoform 2 K14305 NUP43; nuclear pore complex protein Nup43
E 25497 Nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 53372 Nup54; nuclear pore complex protein Nup54 K14308 NUP54; nuclear pore complex protein Nup54
E 65274 Nup62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 113929 Nup88; nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88
E 291874 Nup93; nuclear pore complex protein Nup93 K14309 NUP93; nuclear pore complex protein Nup93
E 81738 Nup98; nuclear pore complex protein Nup98-Nup96 proprotein K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 116555 Nup107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 292085 Nup133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 366016 Nup188; nucleoporin NUP188 isoform X1 K14311 NUP188; nuclear pore complex protein Nup188
E 25281 Nup153; nuclear pore complex protein Nup153 K14296 NUP153; nuclear pore complex protein Nup153
E 117021 Nup155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 311182 Nup160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 295692 Nup35; nucleoporin NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 362335 Nup205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 58958 Nup210; nuclear pore membrane glycoprotein 210 precursor K14314 NUP210; nuclear pore complex protein Nup210
E 365844 Nup210l; nuclear pore membrane glycoprotein 210-like K14314 NUP210; nuclear pore complex protein Nup210
E 296634 Nup214; nuclear pore complex protein Nup214 K14317 NUP214; nuclear pore complex protein Nup214
E 113975 Pom121; nuclear envelope pore membrane protein POM 121 K14316 POM121; nuclear pore complex protein Nup121
E 502128 Pom121l2; POM121-like protein 2 isoform 1 K14316 POM121; nuclear pore complex protein Nup121
E 245922 Nup58; nucleoporin p58/p45 K14307 NUPL1; nucleoporin p58/p45
E 499974 Nup42; nucleoporin NUP42 K14321 NUPL2; nucleoporin-like protein 2
E 362557 Ndc1; nucleoporin NDC1 K14315 NDC1; nucleoporin NDC1
E 294429 Ranbp2; E3 SUMO-protein ligase RanBP2 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 78973 Senp2; sentrin-specific protease 2 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 408222 Senp18; Sumo1/sentrin/SMT3 specific peptidase 18 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 408216 Senp17; Sumo1/sentrin/SMT3 specific peptidase 17 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 300259 Aaas; aladin K14320 AAAS; aladin
E 170895 Cetn3; centrin-3 K16466 CETN3; centrin-3
E 362098 Gle1; mRNA export factor GLE1 K18723 GLE1; nucleoporin GLE1
E 500697 Gle1l1; mRNA export factor GLE1-like K18723 GLE1; nucleoporin GLE1
E 59087 Nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 501621 Nxf7; nuclear RNA export factor 7 K14284 NXF; nuclear RNA export factor
E 308653 Nxf2; nuclear RNA export factor 2 isoform X1 K14284 NXF; nuclear RNA export factor
E 302591 Nxf3; nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 296219 Nxt1; NTF2-related export protein 1 K14285 NXT1_2; NTF2-related export protein 1/2
E 315352 Nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 313163 1700009N14Rikl; uncharacterized protein LOC313163 K07936 RAN; GTP-binding nuclear protein Ran
E 84509 Ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 751812 Rasl2-9; GTP-binding nuclear protein Ran, testis-specific isoform K07936 RAN; GTP-binding nuclear protein Ran
E 25379 Anp32a; acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 170724 Anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 287437 Tnfsf13; tumor necrosis factor ligand superfamily member 13 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 363854 Elavl1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 286973 Elavl2; ELAV-like protein 2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 282824 Elavl3; ELAV-like protein 3 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 432358 Elavl4; ELAV-like protein 4 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 291000 Faf2; FAS-associated factor 2 isoform 2 K18726 FAF2; FAS-associated factor 2
E 116643 Vcp; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 102548559 Vcpkmt; protein N-lysine methyltransferase METTL21D isoform X2 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 304670 Tnpo2; transportin-2 K18727 TNPO2; transportin-2
E 85252 Xpo1; exportin-1 K14290 XPO1; exportin-1
E 361070 Xpo7; exportin-7 K18460 XPO7; exportin-7
E 303029 Ranbp17; ran-binding protein 17 K24115 RANBP17; Ran-binding protein 17
E 362965 Rangap1; ran GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 117045 Eif4e; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 686104 Eif4e1b; eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 363275 Eif4e2; eukaryotic translation initiation factor 4E type 2 isoform 1 K03259 EIF4E; translation initiation factor 4E
E 303831 Eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 287436 Eif4a1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 287986 Eif4g1; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 298573 Eif4g3; eukaryotic translation initiation factor 4 gamma 3 isoform 2 K03260 EIF4G; translation initiation factor 4G
E 361628 Eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 300253 Eif4b; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 288599 Eif4h; eukaryotic translation initiation factor 4H K24086 EIF4H; translation initiation factor 4H
E 116636 Eif4ebp1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 361845 Eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 100365872 Eif4ebp3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 305468 Eif4enif1; eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 305035 Angel2; protein angel homolog 2 isoform 1 K18729 ANGEL; protein angel
E 362765 Angel1; protein angel homolog 1 K18729 ANGEL; protein angel
E 24948 Fmr1; fragile X messenger ribonucleoprotein 1 K15516 FMR; fragile X mental retardation protein
E 287433 Fxr2; RNA-binding protein FXR2 K15516 FMR; fragile X mental retardation protein
E 361927 Fxr1; RNA-binding protein FXR1 isoform 4 K15516 FMR; fragile X mental retardation protein
E 134484932 RNA-binding protein FXR1 K15516 FMR; fragile X mental retardation protein
E 308666 Cyfip1; cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 691231 Gemin5; gem-associated protein 5 K13133 GEMIN5; gem associated protein 5
E 360962 Tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 293056 Cpeb1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 303010 Cpeb4; cytoplasmic polyadenylation element-binding protein 4 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 309510 Cpeb3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 360949 Cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 364073 Ddx3; DEAD-box helicase 3 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 317335 Ddx3x; ATP-dependent RNA helicase DDX3X isoform 1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 100362458 Gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 304378 Gigyf1; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 171350 Pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 688518 Pabpc5; polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 298510 Pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 296351 Pabpc1l; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 302405 Pabpc1l2a; polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 292295 Pabpc6; poly(A) binding protein, cytoplasmic 6 K13126 PABPC; polyadenylate-binding protein
E 295010 Pabpc4l; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 291615 Pabpc2; poly(A) binding protein, cytoplasmic 2 K13126 PABPC; polyadenylate-binding protein
E 134484067 Pabpc1l2b; polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 365684 Paip1; polyadenylate-binding protein-interacting protein 1 isoform b K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 361309 Paip2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 312490 Paip2b; polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 294260 Skic2; SKI2 subunit of superkiller complex protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 83632 Deaf1; deformed epidermal autoregulatory factor 1 homolog K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 302500 Mcts1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 689500 Mcts2; malignant T-cell-amplified sequence 2 K07575 MCTS; malignant T-cell-amplified sequence
E 687565 Denr; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 25383 Apobec1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 170912 A1cf; APOBEC1 complementation factor K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 366790 Pym1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 29578 Hnrnpa1; heterogeneous nuclear ribonucleoprotein A1 isoform 2 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 362152 Hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 isoform a K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100911361 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 120096281 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 362836 Dazap1; DAZ-associated protein 1 K14411 MSI; RNA-binding protein Musashi
E 259272 Msi1; RNA-binding protein Musashi homolog 1 K14411 MSI; RNA-binding protein Musashi
E 360596 Msi2; RNA-binding protein Musashi homolog 2 isoform X13 K14411 MSI; RNA-binding protein Musashi
E 293408 Hbs1l; HBS1-like protein K14416 HBS1; elongation factor 1 alpha-like protein
E 294754 Pelo; protein pelota homolog K06965 PELO; protein pelota
E 116697 Pabpn1; polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 307920 Pabpn1l; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 292022 Ddx19a; ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 690693 Ddx19b; ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 58856 Ddx25; ATP-dependent RNA helicase DDX25 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7]
E 245976 Xab2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 362819 Sarnp; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 682908 Rcc1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 315731 Larp6; la-related protein 6 K18733 LARP6; la-related protein 6
E 498407 Purb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 315170 Poldip3; polymerase delta-interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 360845 Zc3h11a; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 134485936 zinc finger CCCH domain-containing protein 11A-like K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 361506 Leng8; leukocyte receptor cluster member 8 K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E 307503 Etf1; eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 24420 Gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 501582 Gspt2; eukaryotic peptide chain release factor GTP-binding subunit ERF3B K03267 ERF3; peptide chain release factor subunit 3
E 684558 Upf1; UPF1, RNA helicase and ATPase K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 361271 Upf2; regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 313449 Upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 361176 Upf3a; regulator of nonsense transcripts 3A K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 24672 Ppp2ca; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 24673 Ppp2cb; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 100362453 Ppp2cal1; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform-like K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 117281 Ppp2r1a; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 315648 Ppp2r1b; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 246255 Ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 60660 Ppp2r2b; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform 1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 117256 Ppp2r2c; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform isoform 1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 117104 Ppp2r2a; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 682033 Ppp2r3b; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 362739 Ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 363122 Ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 309179 Ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 691318 Ppp2r5c; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform 4 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 363193 Ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 299147 Ppp2r5e; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 312754 Ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 691397 Smg1; SMG1, nonsense mediated mRNA decay associated PI3K related kinase K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 681012 Smg5; nonsense-mediated mRNA decay factor SMG5 isoform X1 K11125 SMG5; protein SMG5
E 314915 Smg5l1; similar to Est1p-like protein B isoform 1 K11125 SMG5; protein SMG5
E 287522 Smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 360855 Smg7; nonsense-mediated mRNA decay factor SMG7 isoform 1 K14409 SMG7; protein SMG7
E 287596 Smg8; nonsense-mediated mRNA decay factor SMG8 K18734 SMG8; protein SMG8
E 365215 Smg9; nonsense-mediated mRNA decay factor SMG9 K18735 SMG9; protein SMG9
E 100362458 Gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 304378 Gigyf1; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 79049 Secisbp2; selenocysteine insertion sequence-binding protein 2 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 296115 Secisbp2l; selenocysteine insertion sequence-binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 684903 Dhx34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 300077 Gtpbp1; GTP-binding protein 1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 499339 Pum3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 294066 Pum3l1; pumilio homolog 3-like K14844 PUF6; pumilio homology domain family member 6
E 25017 Myo5a; unconventional myosin-Va K10357 MYO5; myosin V
E 25132 Myo5b; unconventional myosin-Vb K10357 MYO5; myosin V
E 315820 Myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 306809 Bicd2; protein bicaudal D homolog 2 isoform 1 K18739 BICD; protein bicaudal D
E 362466 Bicd1; protein bicaudal D homolog 1 K18739 BICD; protein bicaudal D
E 311334 Exd1; piRNA biogenesis protein EXD1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 100361457 Actg1l1; actin, gamma 1 propeptide-like K05692 ACTB_G1; actin beta/gamma 1
E 81822 Actb; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 287876 Actg1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 120098222 POTE ankyrin domain family member F K05692 ACTB_G1; actin beta/gamma 1
E 24547 Mbp; myelin basic protein isoform 1 K17269 MBP; myelin basic protein
E 81818 Vim; vimentin K07606 VIM; vimentin
E 689415 Mt2A; metallothionein-2 K14739 MT1_2; metallothionein 1/2
E 24567 Mt1; metallothionein-1 K14739 MT1_2; metallothionein 1/2
E 24577 Myc; myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein
E 306351 Gdf1; embryonic growth/differentiation factor 1 precursor K05495 GDF1; growth differentiation factor 1
E 365371 Tbx6; T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 365494 Nanos1; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 171091 Zbp1; Z-DNA-binding protein 1 K12965 ZBP1; Z-DNA binding protein 1
E 171137 Khsrp; far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein
E 654496 Fubp1; far upstream element-binding protein 1 K13210 FUBP; far upstream element-binding protein
E 362106 Fubp3; far upstream element-binding protein 3 K13210 FUBP; far upstream element-binding protein
E 24799 Eef1a2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 171361 Eef1a1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 100360413 Eef1a1l1; elongation factor 1-alpha 1-like K03231 EEF1A; elongation factor 1-alpha
E 103691939 Eef1a1l2; elongation factor 1-alpha 1-like K03231 EEF1A; elongation factor 1-alpha
E 293725 Eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 362361 Hnrnpa2b1; heterogeneous nuclear ribonucleoproteins A2/B1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 291202 Hax1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 363266 Agfg1; arf-GAP domain and FG repeat-containing protein 1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 171500 Stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform LL (A) K17597 STAU; double-stranded RNA-binding protein Staufen
E 84496 Stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 312320 Igf2bp3; insulin-like growth factor 2 mRNA-binding protein 3 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 29497 Ptbp1; polypyrimidine tract-binding protein 1 isoform a K13218 PTBP1; polypyrimidine tract-binding protein 1
E 293056 Cpeb1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 303010 Cpeb4; cytoplasmic polyadenylation element-binding protein 4 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 309510 Cpeb3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 360949 Cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 24948 Fmr1; fragile X messenger ribonucleoprotein 1 K15516 FMR; fragile X mental retardation protein
E 287433 Fxr2; RNA-binding protein FXR2 K15516 FMR; fragile X mental retardation protein
E 361927 Fxr1; RNA-binding protein FXR1 isoform 4 K15516 FMR; fragile X mental retardation protein
E 134484932 RNA-binding protein FXR1 K15516 FMR; fragile X mental retardation protein
E 308666 Cyfip1; cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 363005 Pcbp2; poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 294336 Pcbp3; poly(rC)-binding protein 3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 363133 Pcbp4; poly(rC)-binding protein 4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 362173 Caprin1; caprin-1 K18743 CAPRIN1; caprin-1
E 686779 Caprin2; caprin-2 K18744 CAPRIN2; caprin-2
E 500538 Ybx1; Y-box-binding protein 1 isoform 2 K09276 YBX1; Y-box-binding protein 1
E 100912427 Ybx1l1; Y-box-binding protein 1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 300944 Xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 313593 Ago3; protein argonaute-3 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 313594 Ago1; protein argonaute-1 isoform 1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 59117 Ago2; protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 298533 Ago4; protein argonaute-4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 117045 Eif4e; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 686104 Eif4e1b; eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 363275 Eif4e2; eukaryotic translation initiation factor 4E type 2 isoform 1 K03259 EIF4E; translation initiation factor 4E
E 684558 Upf1; UPF1, RNA helicase and ATPase K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 364073 Ddx3; DEAD-box helicase 3 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 317335 Ddx3x; ATP-dependent RNA helicase DDX3X isoform 1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 100312982 Ddx3y; ATP-dependent RNA helicase DDX3Y K17642 DDX3Y; ATP-dependent RNA helicase DDX3Y [EC:5.6.2.7]
E 500988 Ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 299613 Mex3d; RNA-binding protein MEX3D K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 307271 Mex3c; RNA-binding E3 ubiquitin-protein ligase MEX3C K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 308790 Mex3b; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 310631 Mex3a; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 296741 Fastk; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 100362102 Lsm14b; protein LSM14 homolog B isoform X3 K18749 LSM14; protein LSM14
E 361554 Lsm14a; protein LSM14 homolog A K18749 LSM14; protein LSM14
E 500242 Pcbp1; poly(rC)-binding protein 1 K12889 PCBP1; poly(rC)-binding protein 1
E 363005 Pcbp2; poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 500538 Ybx1; Y-box-binding protein 1 isoform 2 K09276 YBX1; Y-box-binding protein 1
E 100912427 Ybx1l1; Y-box-binding protein 1 K09276 YBX1; Y-box-binding protein 1
E 85265 Ajuba; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 361552 Wtip; Wilms tumor protein 1-interacting protein K16682 AJUBA; LIM domain-containing protein
E 316101 Limd1; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 25383 Apobec1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 315137 Apobec3; DNA dC->dU-editing enzyme APOBEC3 K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 310756 Mov10; helicase MOV-10 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 100125373 Pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 309126 Tnpo1; transportin-1 isoform b K18752 TNPO1; transportin-1
E 691397 Smg1; SMG1, nonsense mediated mRNA decay associated PI3K related kinase K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 681012 Smg5; nonsense-mediated mRNA decay factor SMG5 isoform X1 K11125 SMG5; protein SMG5
E 314915 Smg5l1; similar to Est1p-like protein B isoform 1 K11125 SMG5; protein SMG5
E 287522 Smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 360855 Smg7; nonsense-mediated mRNA decay factor SMG7 isoform 1 K14409 SMG7; protein SMG7
E 79426 Zfp36; mRNA decay activator protein ZFP36 K15308 TTP; tristetraprolin
E 29344 Zfp36l1; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 298765 Zfp36l2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 689054 Lin28b; protein lin-28 homolog B isoform X1 K18754 LIN28; protein lin-28
E 500562 Lin28a; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 29424 Htt; huntingtin K04533 HD; huntingtin
E 686774 Ipo8; importin-8 K18755 IPO8; importin-8
E 361832 Bicc1; protein bicaudal C homolog 1 K18756 BICC1; protein bicaudal C
E 29578 Hnrnpa1; heterogeneous nuclear ribonucleoprotein A1 isoform 2 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 362152 Hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 isoform a K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100911361 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 120096281 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 25636 Prkaca; cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 293508 Prkacb; cAMP-dependent protein kinase catalytic subunit beta K04345 PKA; protein kinase A [EC:2.7.11.11]
E 303158 Larp1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 288663 Atxn2; ataxin-2 K23625 ATXN2_2L; ataxin 2/2L
E 361649 Atxn2l; ataxin-2-like protein isoform 1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 291604 Dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 361109 Dcp1a; mRNA-decapping enzyme 1A isoform 1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 500305 Dcp1b; mRNA-decapping enzyme 1B isoform X2 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 364624 Lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 684148 Lsm2; U6 snRNA-associated Sm-like protein LSm2 isoform 1 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 297455 Lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 290647 Lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 306222 Lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 103693862 Lsm5l1; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 134479504 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 498934 Lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 100360750 Lsm6l1; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 362829 Lsm7; U6 snRNA-associated Sm-like protein LSm7 isoform 1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 296913 Lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 171041 Klc1; kinesin light chain 1 isoform C K10407 KLC; kinesin light chain
E 171549 Klc3; kinesin light chain 3 K10407 KLC; kinesin light chain
E 316226 Klc4; kinesin light chain 4 K10407 KLC; kinesin light chain
E 309159 Klc2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 25017 Myo5a; unconventional myosin-Va K10357 MYO5; myosin V
E 25132 Myo5b; unconventional myosin-Vb K10357 MYO5; myosin V
E 315820 Myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 64158 Tuba1a; tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 291287 Tubal3; tubulin alpha chain-like 3 K07374 TUBA; tubulin alpha
E 300218 Tuba1c; tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 316531 Tuba4a; tubulin alpha-4A chain K07374 TUBA; tubulin alpha
E 500319 Tuba3a; tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 500363 Tuba3b; tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 500377 Tuba8; tubulin alpha-8 chain K07374 TUBA; tubulin alpha
E 500929 Tuba1b; tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 293056 Cpeb1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 303010 Cpeb4; cytoplasmic polyadenylation element-binding protein 4 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 309510 Cpeb3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 360949 Cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 691231 Gemin5; gem-associated protein 5 K13133 GEMIN5; gem associated protein 5
E 360962 Tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 308971 Tnrc6a; trinucleotide repeat-containing gene 6A protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 192178 Tnrc6b; trinucleotide repeat-containing gene 6B protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 303774 Tnrc6c; trinucleotide repeat-containing gene 6C protein isoform X4 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 291841 Cnot1; CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 299805 Cnot2; CCR4-NOT transcription complex subunit 2 Isoform 1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 308311 Cnot3; CCR4-NOT transcription complex subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 312227 Cnot4; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 287249 Cnot6; CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 360917 Cnot6l; CCR4-NOT transcription complex subunit 6-like isoform 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 306492 Cnot7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 363603 Cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 308509 Garre1; granule associated Rac and RHOG effector protein 1 K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 367307 Dis3l2; DIS3-like exonuclease 2 isoform 1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 408200 Pan2; PAN2-PAN3 deadenylation complex catalytic subunit Pan2 isoform 1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 360760 Pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 170842 Tob1; protein Tob1 K14443 TOB; protein Tob/BTG
E 29618 Btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 29619 Btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 315159 Tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 315650 Btg4; protein BTG4 isoform 2 K14443 TOB; protein Tob/BTG
E 367975 Btg1b; Protein BTG1-like K14443 TOB; protein Tob/BTG
E 54230 Btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 298349 Btg1c; protein BTG1 K14443 TOB; protein Tob/BTG
E 305468 Eif4enif1; eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 361736 Patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 315708 Edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 361399 Edc4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 365213 Nanos2; nanos homolog 2 K18760 NANOS2; protein nanos 2
E 288909 Nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 361271 Upf2; regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 313449 Upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 361176 Upf3a; regulator of nonsense transcripts 3A K14328 UPF3; regulator of nonsense transcripts 3
E 308901 Trim21; E3 ubiquitin-protein ligase TRIM21 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 301042 Trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 117017 Polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 54287 Eif2ak2; interferon-induced, double-stranded RNA-activated protein kinase K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 353228 Zar1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 689594 Zar1l; protein ZAR1-like isoform X2 K18762 ZAR1; zygote arrest protein 1
E 296467 Ythdf1; YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
E 313053 Ythdf2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 361920 Ythdf3; YTH domain-containing family protein 3 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 361655 Tial1; nucleolysin TIAR K13201 TIA1; nucleolysin TIA-1/TIAR
E 312510 Tia1; cytotoxic granule associated RNA binding protein TIA1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 171350 Pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 688518 Pabpc5; polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 298510 Pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 296351 Pabpc1l; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 302405 Pabpc1l2a; polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 292295 Pabpc6; poly(A) binding protein, cytoplasmic 6 K13126 PABPC; polyadenylate-binding protein
E 295010 Pabpc4l; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 291615 Pabpc2; poly(A) binding protein, cytoplasmic 2 K13126 PABPC; polyadenylate-binding protein
E 134484067 Pabpc1l2b; polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 171500 Stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform LL (A) K17597 STAU; double-stranded RNA-binding protein Staufen
E 84496 Stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 24948 Fmr1; fragile X messenger ribonucleoprotein 1 K15516 FMR; fragile X mental retardation protein
E 287433 Fxr2; RNA-binding protein FXR2 K15516 FMR; fragile X mental retardation protein
E 361927 Fxr1; RNA-binding protein FXR1 isoform 4 K15516 FMR; fragile X mental retardation protein
E 134484932 RNA-binding protein FXR1 K15516 FMR; fragile X mental retardation protein
E 171091 Zbp1; Z-DNA-binding protein 1 K12965 ZBP1; Z-DNA binding protein 1
E 363854 Elavl1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 171092 G3bp1; ras GTPase-activating protein-binding protein 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 305240 G3bp2; ras GTPase-activating protein-binding protein 2 isoform 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 502531 Eif2a; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 288516 Eif3b; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 303831 Eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 287436 Eif4a1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 688288 Eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 300253 Eif4b; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 287986 Eif4g1; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 298573 Eif4g3; eukaryotic translation initiation factor 4 gamma 3 isoform 2 K03260 EIF4G; translation initiation factor 4G
E 361628 Eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 81771 Rps6ka1; ribosomal protein S6 kinase alpha-1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 117269 Rps6ka2; ribosomal protein S6 kinase alpha-2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 501560 Rps6ka3; ribosomal protein S6 kinase alpha-3 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 317203 Rps6ka6; ribosomal protein S6 kinase alpha-6 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 83427 Rack1; small ribosomal subunit protein RACK1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 311786 Traf2; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 59087 Nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 501621 Nxf7; nuclear RNA export factor 7 K14284 NXF; nuclear RNA export factor
E 308653 Nxf2; nuclear RNA export factor 2 isoform X1 K14284 NXF; nuclear RNA export factor
E 302591 Nxf3; nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 108348065 Hdac6; histone deacetylase 6 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 306066 Tdrd3; tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3
E 307070 Larp4b; la-related protein 4B K18763 LARP4; la-related protein 4
E 100910299 Larp4; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 361109 Dcp1a; mRNA-decapping enzyme 1A isoform 1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 500305 Dcp1b; mRNA-decapping enzyme 1B isoform X2 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 291604 Dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 500988 Ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 315708 Edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 361399 Edc4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 361736 Patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 364624 Lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 684148 Lsm2; U6 snRNA-associated Sm-like protein LSm2 isoform 1 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 297455 Lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 290647 Lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 306222 Lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 103693862 Lsm5l1; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 134479504 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 498934 Lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 100360750 Lsm6l1; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 362829 Lsm7; U6 snRNA-associated Sm-like protein LSm7 isoform 1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 296913 Lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 300944 Xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 362229 Xrn2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 363129 Nudt16; U8 snoRNA-decapping enzyme K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
E 688828 Nudt16l2; uncharacterized protein LOC688828 K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 266605 Dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 287773 Helz; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 679140 Exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 366017 Exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 313243 Exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 300045 Exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 308441 Exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 307850 Exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 316098 Exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 294975 Exosc9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 306103 Dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 363077 Dis3l; DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 313707 Exosc10; exosome complex component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 289810 C1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 686999 Mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 100360801 Ddx60; DEXD/H-box helicase 60 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
E 134478918 probable ATP-dependent RNA helicase DDX60 isoform X1 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E 298086 Zcchc7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 365668 Mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 294260 Skic2; SKI2 subunit of superkiller complex protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 294595 Skic3; tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3
E 363064 Skic8; superkiller complex protein 8 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 287249 Cnot6; CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 360917 Cnot6l; CCR4-NOT transcription complex subunit 6-like isoform 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 291841 Cnot1; CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 299805 Cnot2; CCR4-NOT transcription complex subunit 2 Isoform 1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 308311 Cnot3; CCR4-NOT transcription complex subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 312227 Cnot4; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 306492 Cnot7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 363603 Cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 301513 Cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 316034 Cnot10; CCR4-NOT transcription complex subunit 10 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 408200 Pan2; PAN2-PAN3 deadenylation complex catalytic subunit Pan2 isoform 1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 360760 Pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 360464 Parn; poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 310461 Dhx36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 170842 Tob1; protein Tob1 K14443 TOB; protein Tob/BTG
E 29618 Btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 29619 Btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 315159 Tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 315650 Btg4; protein BTG4 isoform 2 K14443 TOB; protein Tob/BTG
E 367975 Btg1b; Protein BTG1-like K14443 TOB; protein Tob/BTG
E 54230 Btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 298349 Btg1c; protein BTG1 K14443 TOB; protein Tob/BTG
E 116630 Csf2; granulocyte-macrophage colony-stimulating factor precursor K05427 CSF2; granulocyte-macrophage colony-stimulating factor
E 310395 Noct; nocturnin K18764 NOCT; nocturnin [EC:3.1.3.108]
E 361159 Eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 691484 Eri2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 266605 Dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 306231 Pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 64831 Ireb2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 287773 Helz; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 296474 Helz2; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 314381 Nrde2; NRDE-2, necessary for RNA interference, domain containing K26109 NRDE2; nuclear exosome regulator NRDE2
E 305826 Samd4a; protein Smaug homolog 1 K27396 SMG; protein Smaug
E 308473 Samd4b; protein Smaug homolog 2 K27396 SMG; protein Smaug
E 313346 Focad; focadhesin isoform X1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 364304 Rnase1; ribonuclease pancreatic beta-type precursor K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 305844 Rnase1l2; ribonuclease pancreatic gamma-type precursor K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 100361909 Ear1; eosinophil-associated, ribonuclease A family, member 1 precursor K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 474169 Rnase2; ribonuclease A family member 2 precursor K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 100361866 eosinophil cationic protein-like precursor K10787 RNASE3; eosinophil cationic protein [EC:3.1.27.-]
E 192264 Rnase3; eosinophil cationic protein precursor K10787 RNASE3; eosinophil cationic protein [EC:3.1.27.-]
E 56759 Rnase4; ribonuclease 4 precursor K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 305842 Rnase6; ribonuclease K6 precursor K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 497651 Rnase11; probable ribonuclease 11 precursor K16633 RNASE11; ribonuclease 11 [EC:3.1.27.-]
E 313587 Zc3h12a; endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 315658 Zc3h12c; probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 296864 Zc3h12b; probable ribonuclease ZC3H12B isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 308266 Zc3h12d; probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 310159 Drosha; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 300689 Rexo2; oligoribonuclease, mitochondrial precursor K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 24333 Eno1; alpha-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 25438 Eno3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 24334 Eno2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 360992 Pnpt1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 65152 Pfkm; ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 25741 Pfkl; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 60416 Pfkp; ATP-dependent 6-phosphofructokinase, platelet type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 291671 Hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 63868 Hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 103694176 Hspd1l1; 60 kDa heat shock protein, mitochondrial-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 366017 Exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 679140 Exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 300045 Exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 316098 Exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024