+D GENES KO #

  KEGG Orthology (KO) - Ralstonia pickettii 12J

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:rpi00010] D Rpic_4865 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Rpic_1861 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Rpic_4388 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D Rpic_2266 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Rpic_0493 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Rpic_2216 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Rpic_2988 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Rpic_0491 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Rpic_0209 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Rpic_0374 Phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Rpic_0972 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Rpic_0492 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Rpic_3482 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Rpic_4390 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Rpic_1298 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Rpic_1947 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Rpic_4645 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D Rpic_4646 Transketolase central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D Rpic_1946 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Rpic_4647 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Rpic_1944 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_1099 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_0535 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Rpic_4437 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Rpic_2494 PQQ-dependent dehydrogenase, methanol/ethanol family K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D Rpic_2566 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_1338 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_2498 Aldehyde Dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D Rpic_2099 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_3974 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_4143 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_4644 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_4072 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Rpic_2993 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Rpic_0950 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Rpic_0641 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Rpic_3739 Phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:rpi00020] D Rpic_2146 citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1] D Rpic_4041 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Rpic_3564 DNA binding domain protein, excisionase family K01647 CS; citrate synthase [EC:2.3.3.1] D Rpic_2158 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Rpic_4479 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Rpic_4553 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Rpic_2752 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Rpic_1097 2-oxoglutarate dehydrogenase, E1 subunit K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Rpic_1098 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Rpic_1944 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_1099 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_0475 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Rpic_0474 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Rpic_1335 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D Rpic_2149 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Rpic_4358 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Rpic_2513 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Rpic_2148 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Rpic_4359 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Rpic_2151 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Rpic_4356 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Rpic_2150 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Rpic_4357 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Rpic_2102 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Rpic_4127 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Rpic_2153 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Rpic_3739 Phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D Rpic_1947 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Rpic_4645 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D Rpic_4646 Transketolase central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D Rpic_1946 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Rpic_4647 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:rpi00030] D Rpic_1861 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Rpic_4867 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Rpic_4866 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D Rpic_3701 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D Rpic_3121 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Rpic_2989 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Rpic_1075 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Rpic_1076 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D Rpic_0878 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D Rpic_0641 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Rpic_4380 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Rpic_1710 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Rpic_0250 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Rpic_4868 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D Rpic_4192 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Rpic_0719 glucose-methanol-choline oxidoreductase K19813 gdh; glucose dehydrogenase [EC:1.1.5.9] D Rpic_3985 SMP-30/Gluconolaconase/LRE domain protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D Rpic_4042 SMP-30/Gluconolaconase/LRE domain protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D Rpic_0692 Gluconate 2-dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D Rpic_0899 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D Rpic_0317 carbohydrate kinase, thermoresistant glucokinase family K00851 idnK; gluconokinase [EC:2.7.1.12] D Rpic_0690 PfkB domain protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D Rpic_4198 PfkB domain protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D Rpic_3481 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Rpic_0362 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Rpic_0493 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Rpic_2266 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Rpic_4388 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:rpi00040] D Rpic_0783 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Rpic_3786 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Rpic_2442 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Rpic_3121 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Rpic_4077 short-chain dehydrogenase/reductase SDR K22185 xylB; D-xylose 1-dehydrogenase [EC:1.1.1.175] D Rpic_4078 SMP-30/Gluconolaconase/LRE domain protein K14274 xylC; xylono-1,5-lactonase [EC:3.1.1.110] D Rpic_4082 Dihydroxy-acid dehydratase K22186 xylD; xylonate dehydratase [EC:4.2.1.82] D Rpic_4451 Aldehyde Dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] C 00051 Fructose and mannose metabolism [PATH:rpi00051] D Rpic_1164 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Rpic_0641 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Rpic_1158 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Rpic_4018 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26] D Rpic_4388 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D Rpic_2266 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Rpic_3109 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D Rpic_3571 Alginate lyase K01729 algL; poly(beta-D-mannuronate) lyase [EC:4.2.2.3] D Rpic_0493 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Rpic_2216 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Rpic_1157 NAD-dependent epimerase/dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135] D Rpic_3110 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Rpic_0202 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] C 00052 Galactose metabolism [PATH:rpi00052] D Rpic_4072 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Rpic_2993 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Rpic_0950 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Rpic_4235 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Rpic_3786 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Rpic_2442 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Rpic_0641 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Rpic_4865 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Rpic_4388 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D Rpic_2990 Mandelate racemase/muconate lactonizing protein K01684 dgoD; galactonate dehydratase [EC:4.2.1.6] D Rpic_2998 putative 2-dehydro-3-deoxygalactonokinase protein K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58] D Rpic_2991 KDPG and KHG aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21] D Rpic_0948 glycoside hydrolase family 31 K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:rpi00053] D Rpic_0783 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Rpic_3985 SMP-30/Gluconolaconase/LRE domain protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D Rpic_4042 SMP-30/Gluconolaconase/LRE domain protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D Rpic_2566 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_1338 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_0946 glucarate dehydratase K01706 gudD; glucarate dehydratase [EC:4.2.1.40] D Rpic_4449 Mandelate racemase/muconate lactonizing protein K01706 gudD; glucarate dehydratase [EC:4.2.1.40] D Rpic_3007 Galactose 1-dehydrogenase K13873 araA; L-arabinose 1-dehydrogenase [EC:1.1.1.376] D Rpic_2994 SMP-30/Gluconolaconase/LRE domain protein K13874 araB; L-arabinonolactonase [EC:3.1.1.15] D Rpic_3005 Dihydroxy-acid dehydratase K13875 araC; L-arabonate dehydrase [EC:4.2.1.25] D Rpic_3006 dihydrodipicolinate synthetase K13876 araD; 2-keto-3-deoxy-L-arabinonate dehydratase [EC:4.2.1.43] D Rpic_4451 Aldehyde Dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Rpic_4452 5-dehydro-4-deoxyglucarate dehydratase K01707 kdgD; 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41] D Rpic_4448 galactarate dehydratase K01708 garD; galactarate dehydratase [EC:4.2.1.42] D Rpic_4447 NAD-dependent epimerase/dehydratase K18981 udh; uronate dehydrogenase [EC:1.1.1.203] C 00500 Starch and sucrose metabolism [PATH:rpi00500] D Rpic_0948 glycoside hydrolase family 31 K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D Rpic_3786 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Rpic_2442 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Rpic_3879 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component D Rpic_4734 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D Rpic_3940 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21] D Rpic_3937 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Rpic_3938 trehalose synthase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1] D Rpic_3934 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D Rpic_3939 alpha amylase catalytic region K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16] D Rpic_3936 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D Rpic_3933 malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15] D Rpic_3935 malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141] D Rpic_4230 alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D Rpic_4231 HAD-superfamily hydrolase, subfamily IIB K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] D Rpic_0641 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Rpic_4865 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Rpic_1861 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rpi00520] D Rpic_0933 Beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Rpic_0062 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Rpic_2027 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D Rpic_0061 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Rpic_0371 protein of unknown function UPF0075 K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D Rpic_0767 phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D Rpic_0390 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D Rpic_0387 Nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D Rpic_3231 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Rpic_2827 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Rpic_4693 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Rpic_1196 glycosyl transferase family 2 K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D Rpic_1193 polysaccharide deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D Rpic_4888 NAD-dependent epimerase/dehydratase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35] D Rpic_4865 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Rpic_0641 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Rpic_3786 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Rpic_2442 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Rpic_0783 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Rpic_4235 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Rpic_0202 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Rpic_1861 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Rpic_1164 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Rpic_1158 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Rpic_1157 NAD-dependent epimerase/dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135] D Rpic_4737 Glutamine--scyllo-inositol transaminase K13010 per; perosamine synthetase [EC:2.6.1.102] D Rpic_4734 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D Rpic_4735 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D Rpic_2702 oxidoreductase FAD/NAD(P)-binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] C 00620 Pyruvate metabolism [PATH:rpi00620] D Rpic_2099 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_3974 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_4143 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_4644 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_1947 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Rpic_4645 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D Rpic_4646 Transketolase central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D Rpic_1946 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Rpic_4647 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Rpic_1944 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_1099 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_4618 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] D Rpic_4437 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Rpic_0535 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Rpic_2494 PQQ-dependent dehydrogenase, methanol/ethanol family K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D Rpic_4317 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Rpic_0492 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Rpic_3482 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Rpic_1010 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Rpic_3031 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Rpic_3032 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Rpic_2134 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Rpic_3568 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Rpic_2566 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_1338 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_2498 Aldehyde Dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D Rpic_1335 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D Rpic_0346 coenzyme A transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D Rpic_0068 thiamine pyrophosphate protein TPP binding domain protein K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D Rpic_3406 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D Rpic_2900 FAD linked oxidase domain protein K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] D Rpic_0396 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Rpic_2532 Glyoxalase/bleomycin resistance protein/dioxygenase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Rpic_2530 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Rpic_2039 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Rpic_3466 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Rpic_0115 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D Rpic_0692 Gluconate 2-dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D Rpic_0899 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D Rpic_3013 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Rpic_2263 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Rpic_2153 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Rpic_2102 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Rpic_4127 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Rpic_2572 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Rpic_3739 Phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D Rpic_4390 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Rpic_1298 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Rpic_1236 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D Rpic_0126 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1445 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_0414 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_4928 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1910 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1915 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_2223 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Rpic_4806 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rpi00630] D Rpic_4801 isocitrate lyase and phosphorylmutase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D Rpic_0542 isocitrate lyase and phosphorylmutase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D Rpic_1232 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D Rpic_2099 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_3974 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_4143 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_4644 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_1236 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D Rpic_2153 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Rpic_2146 citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1] D Rpic_4041 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Rpic_3564 DNA binding domain protein, excisionase family K01647 CS; citrate synthase [EC:2.3.3.1] D Rpic_2158 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Rpic_4479 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Rpic_4553 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Rpic_0126 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1445 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_0414 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_4928 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1910 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1915 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_4412 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D Rpic_1914 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D Rpic_2902 D-lactate dehydrogenase (cytochrome) K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D Rpic_2903 FAD linked oxidase domain protein K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D Rpic_2904 protein of unknown function DUF224 cysteine-rich region domain protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D Rpic_0115 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D Rpic_0692 Gluconate 2-dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D Rpic_0899 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D Rpic_0907 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Rpic_3122 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Rpic_0678 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Rpic_3489 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Rpic_3487 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Rpic_1944 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_1099 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_3488 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Rpic_3478 glyoxylate carboligase K01608 gcl; tartronate-semialdehyde synthase [EC:4.1.1.47] D Rpic_3479 hydroxypyruvate isomerase K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22] D Rpic_2693 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D Rpic_4497 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D Rpic_3480 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D Rpic_3481 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Rpic_0362 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Rpic_4192 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Rpic_4391 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Rpic_2586 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Rpic_4642 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Rpic_2585 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Rpic_4643 NADH dehydrogenase (quinone) K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Rpic_4392 NADH dehydrogenase (quinone) K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Rpic_2583 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Rpic_0710 arylformamidase K07130 kynB; arylformamidase [EC:3.5.1.9] D Rpic_2074 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:rpi00640] D Rpic_2099 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_3974 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_4143 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_4644 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_2037 propionate/CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D Rpic_0346 coenzyme A transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D Rpic_4317 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Rpic_1944 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_1099 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_0124 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Rpic_3133 quinone oxidoreductase, YhdH/YhfP family K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D Rpic_3114 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Rpic_4929 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Rpic_1010 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Rpic_3031 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Rpic_3032 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Rpic_2134 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Rpic_3721 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D Rpic_4273 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Rpic_0474 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Rpic_0475 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Rpic_4274 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Rpic_3975 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Rpic_3860 2-methylcitrate synthase/citrate synthase II K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D Rpic_3859 2-methylisocitrate dehydratase, Fe/S-dependent K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117] D Rpic_3858 AcnD-accessory protein PrpF K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-] D Rpic_4479 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Rpic_4553 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Rpic_3861 methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] D Rpic_2155 methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] D Rpic_2382 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] C 00650 Butanoate metabolism [PATH:rpi00650] D Rpic_0126 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1445 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_0414 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_4928 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1910 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1915 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_0090 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Rpic_2168 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Rpic_1447 3-hydroxyacyl-CoA dehydrogenase NAD-binding K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Rpic_0349 3-hydroxyacyl-CoA dehydrogenase NAD-binding K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Rpic_4929 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Rpic_3114 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Rpic_0124 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Rpic_4029 coenzyme A transferase K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D Rpic_4028 3-oxoacid CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] D Rpic_4316 Phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19] D Rpic_4618 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] D Rpic_4313 Poly-beta-hydroxybutyrate polymerase domain protein K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D Rpic_1916 poly(R)-hydroxyalkanoic acid synthase, class I K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D Rpic_0874 polyhydroxyalkanoate depolymerase, intracellular K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] D Rpic_4412 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D Rpic_1914 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D Rpic_1881 Asp/Glu/hydantoin racemase K01799 nicE; maleate isomerase [EC:5.2.1.1] D Rpic_4021 Asp/Glu/hydantoin racemase K01799 nicE; maleate isomerase [EC:5.2.1.1] D Rpic_2149 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Rpic_4358 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Rpic_2513 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Rpic_2148 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Rpic_4359 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Rpic_2151 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Rpic_4356 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Rpic_2150 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Rpic_4357 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Rpic_3721 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D Rpic_4318 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Rpic_0656 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Rpic_3722 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Rpic_1335 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D Rpic_1435 Alcohol dehydrogenase K00043 gbd; 4-hydroxybutyrate dehydrogenase [EC:1.1.1.61] D Rpic_2061 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Rpic_0114 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Rpic_1378 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Rpic_1983 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Rpic_1982 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Rpic_0655 acetoacetyl-CoA synthase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D Rpic_4270 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D Rpic_1981 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D Rpic_1209 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane K07518 E3.1.1.22; hydroxybutyrate-dimer hydrolase [EC:3.1.1.22] D Rpic_4271 Acetoacetate decarboxylase K01574 adc; acetoacetate decarboxylase [EC:4.1.1.4] D Rpic_4415 Alcohol dehydrogenase GroES domain protein K18369 adh2; alcohol dehydrogenase [EC:1.1.1.-] D Rpic_2228 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Rpic_1228 thiamine pyrophosphate protein domain protein TPP-binding K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Rpic_4504 thiamine pyrophosphate protein domain protein TPP-binding K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Rpic_2227 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:rpi00660] D Rpic_2228 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Rpic_1228 thiamine pyrophosphate protein domain protein TPP-binding K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Rpic_4504 thiamine pyrophosphate protein domain protein TPP-binding K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Rpic_2227 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Rpic_0474 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Rpic_0475 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Rpic_2145 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Rpic_1381 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Rpic_2144 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Rpic_1382 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Rpic_2143 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:rpi00562] D Rpic_3050 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D Rpic_4613 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D Rpic_0175 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D Rpic_1001 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Rpic_4274 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Rpic_3975 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Rpic_2216 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:rpi00190] D Rpic_2214 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D Rpic_2213 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D Rpic_2212 NADH (or F420H2) dehydrogenase, subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D Rpic_2211 NADH dehydrogenase I, D subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D Rpic_2210 NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D Rpic_2209 NADH-quinone oxidoreductase, F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D Rpic_2208 NADH-quinone oxidoreductase, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D Rpic_2207 NADH dehydrogenase (quinone) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D Rpic_2206 NADH-quinone oxidoreductase, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D Rpic_2205 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D Rpic_2204 NADH-ubiquinone oxidoreductase chain 4L K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D Rpic_2203 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D Rpic_2202 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D Rpic_2201 proton-translocating NADH-quinone oxidoreductase, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D Rpic_2434 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Rpic_2149 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Rpic_4358 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Rpic_2513 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Rpic_2148 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Rpic_4359 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Rpic_2151 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Rpic_4356 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Rpic_2150 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Rpic_4357 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Rpic_3206 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Rpic_1794 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Rpic_3205 Cytochrome b/b6 domain K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Rpic_3204 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Rpic_0228 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Rpic_3160 cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D Rpic_1874 cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D Rpic_4876 conserved hypothetical protein K02277 coxD; cytochrome c oxidase subunit IV [EC:7.1.1.9] D Rpic_4874 cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D Rpic_4875 cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D Rpic_0223 cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D Rpic_4873 cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D Rpic_0219 cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D Rpic_4872 cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D Rpic_0218 cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D Rpic_0221 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D Rpic_0227 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Rpic_1104 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Rpic_1105 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Rpic_1107 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Rpic_3161 cytochrome o ubiquinol oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D Rpic_1875 cytochrome o ubiquinol oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D Rpic_3162 cytochrome o ubiquinol oxidase, subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D Rpic_1876 cytochrome o ubiquinol oxidase, subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D Rpic_3163 ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D Rpic_1877 ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D Rpic_4159 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Rpic_4158 cytochrome bd ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Rpic_1791 cytochrome c class I K08738 CYC; cytochrome c D Rpic_3458 cytochrome c class I K08738 CYC; cytochrome c D Rpic_2493 cytochrome c class I K08738 CYC; cytochrome c D Rpic_2536 cytochrome c class I K08738 CYC; cytochrome c D Rpic_3514 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Rpic_3512 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Rpic_3513 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Rpic_3515 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Rpic_3511 cyclic nucleotide-binding protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Rpic_4469 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Rpic_3518 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Rpic_3516 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Rpic_3517 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Rpic_2565 Inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D Rpic_2019 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Rpic_3567 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Rpic_1700 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms [PATH:rpi00710] D Rpic_0491 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Rpic_2988 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Rpic_0493 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Rpic_2266 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Rpic_2989 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Rpic_1076 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D Rpic_2216 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Rpic_3121 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Rpic_2572 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Rpic_3013 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Rpic_2263 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Rpic_2153 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:rpi00680] D Rpic_0535 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Rpic_0534 S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D Rpic_4391 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Rpic_2586 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Rpic_4642 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Rpic_2585 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Rpic_4643 NADH dehydrogenase (quinone) K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Rpic_4392 NADH dehydrogenase (quinone) K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Rpic_2583 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Rpic_0678 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Rpic_3481 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Rpic_0362 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Rpic_0972 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Rpic_2572 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Rpic_2153 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Rpic_0493 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Rpic_2266 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Rpic_4388 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D Rpic_4317 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Rpic_2099 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_3974 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_4143 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_4644 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_4390 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Rpic_1298 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Rpic_0209 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Rpic_0374 Phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Rpic_3984 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Rpic_3740 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Rpic_0773 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Rpic_1906 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Rpic_1101 putative lipoprotein K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] C 00910 Nitrogen metabolism [PATH:rpi00910] D Rpic_2515 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Rpic_4666 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Rpic_4667 nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Rpic_4163 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Rpic_0237 putative nitrate transporter protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D Rpic_0236 nitrate ABC transporter, inner membrane subunit K15577 nrtB; nitrate/nitrite transport system permease protein D Rpic_0235 nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D Rpic_2520 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Rpic_4669 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Rpic_2519 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Rpic_4670 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Rpic_2517 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Rpic_4672 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Rpic_2844 periplasmic nitrate reductase, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D Rpic_2845 Nitrate reductase cytochrome c-type subunit (NapB) K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D Rpic_4167 Nitrate reductase K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-] D Rpic_4166 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4] D Rpic_4164 nitrite reductase (NAD(P)H), large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15] D Rpic_4165 nitrite reductase (NAD(P)H), small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15] D Rpic_4015 nitrite reductase, copper-containing K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1] D Rpic_4013 putative nitric oxide reductase (subunit B) transmembrane protein K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D Rpic_4059 Nitrous-oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4] D Rpic_3641 2-nitropropane dioxygenase NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D Rpic_0096 2-nitropropane dioxygenase NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D Rpic_4822 2-nitropropane dioxygenase NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D Rpic_4817 2-nitropropane dioxygenase NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D Rpic_4838 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Rpic_0356 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D Rpic_3243 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Rpic_3242 glutamate synthase, NADH/NADPH, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Rpic_4911 cyanate lyase K01725 cynS; cyanate lyase [EC:4.2.1.104] D Rpic_0127 Carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:rpi00920] D Rpic_1211 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D Rpic_1221 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Rpic_1222 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Rpic_1223 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Rpic_2885 taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein D Rpic_2883 binding-protein-dependent transport systems inner membrane component K15552 tauC; taurine transport system permease protein D Rpic_2884 ABC transporter related K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D Rpic_4455 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_4089 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_1213 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_1214 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_3602 conserved hypothetical signal peptide protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_1042 NMT1/THI5 like domain protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_4038 NMT1/THI5 like domain protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_4459 NMT1/THI5 like domain protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_4009 putative periplasmic substrate-binding transmembrane protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_1216 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_4458 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_4010 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_4037 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_1044 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_1217 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_4011 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_4036 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_4457 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_1043 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_1215 Alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D Rpic_4461 Alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D Rpic_1212 NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D Rpic_2685 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Rpic_2686 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Rpic_2687 adenylylsulfate reductase, thioredoxin dependent K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Rpic_3454 conserved hypothetical protein K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2] D Rpic_3453 conserved hypothetical protein K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2] D Rpic_2499 conserved hypothetical membrane associated protein K17226 soxY; sulfur-oxidizing protein SoxY D Rpic_3457 conserved hypothetical protein K17226 soxY; sulfur-oxidizing protein SoxY D Rpic_3456 Sulphur oxidation protein SoxZ K17227 soxZ; sulfur-oxidizing protein SoxZ D Rpic_3451 5'-Nucleotidase domain protein K17224 soxB; S-sulfosulfanyl-L-cysteine sulfohydrolase [EC:3.1.6.20] D Rpic_2689 Sulfite reductase (ferredoxin) K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D Rpic_3460 Flavocytochrome c sulphide dehydrogenase flavin-binding K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3] D Rpic_3461 conserved hypothetical signal peptide protein K17230 fccA; cytochrome subunit of sulfide dehydrogenase D Rpic_2431 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Rpic_1003 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Rpic_3723 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D Rpic_4634 Rieske (2Fe-2S) domain protein K15762 tmoC; toluene monooxygenase system ferredoxin subunit D Rpic_4637 Oxidoreductase FAD-binding domain protein K15765 tmoF; toluene monooxygenase electron transfer component [EC:1.18.1.3] D Rpic_1455 AMP-dependent synthetase and ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D Rpic_0024 AMP-dependent synthetase and ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D Rpic_0795 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D Rpic_2638 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D Rpic_0348 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:rpi00061] D Rpic_1010 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Rpic_3031 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Rpic_3032 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Rpic_2134 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Rpic_4762 putative acyl-carrier protein K02078 acpP; acyl carrier protein D Rpic_4763 phosphopantetheine-binding K02078 acpP; acyl carrier protein D Rpic_0918 acyl carrier protein K02078 acpP; acyl carrier protein D Rpic_0310 acyl carrier protein K02078 acpP; acyl carrier protein D Rpic_4648 conserved hypothetical protein K02078 acpP; acyl carrier protein D Rpic_0916 cyclic nucleotide-binding protein K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Rpic_0915 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Rpic_4775 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Rpic_4771 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Rpic_0303 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Rpic_4774 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Rpic_0919 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Rpic_4824 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_4773 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_2383 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_2567 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_0917 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_0416 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_1138 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_3842 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_1289 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Rpic_1013 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Rpic_3685 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_3104 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_0413 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_0109 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_3980 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_2412 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:rpi00071] D Rpic_0126 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1445 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_0414 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_4928 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1910 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1915 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_0350 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Rpic_2629 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Rpic_4929 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Rpic_3114 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Rpic_1447 3-hydroxyacyl-CoA dehydrogenase NAD-binding K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Rpic_0349 3-hydroxyacyl-CoA dehydrogenase NAD-binding K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Rpic_0124 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Rpic_3835 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Rpic_2177 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Rpic_0104 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Rpic_2632 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Rpic_4927 acyl-CoA dehydrogenase domain protein K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D Rpic_0417 Protein of unknown function DUF1974 K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D Rpic_0706 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Rpic_3685 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_3104 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_0413 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_0109 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_3980 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_2412 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_4109 Alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D Rpic_0535 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Rpic_4437 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Rpic_2566 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_1338 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_4258 cytochrome P450 K14338 cypD_E; cytochrome P450 / NADPH-cytochrome P450 reductase [EC:1.14.14.1 1.6.2.4] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:rpi00561] D Rpic_3481 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Rpic_0362 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Rpic_2566 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_1338 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_3334 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Rpic_0914 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Rpic_2823 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Rpic_0624 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Rpic_0398 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Rpic_2236 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Rpic_0739 Triacylglycerol lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3] C 00564 Glycerophospholipid metabolism [PATH:rpi00564] D Rpic_0213 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Rpic_3327 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Rpic_2823 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Rpic_0624 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Rpic_0398 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Rpic_2236 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Rpic_3050 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D Rpic_4613 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D Rpic_0175 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D Rpic_1096 Glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Rpic_0378 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Rpic_4309 Ethanolamine ammonia lyase large subunit K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7] D Rpic_4308 Ethanolamine ammonia-lyase K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7] D Rpic_1283 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Rpic_2224 CDP-diacylglycerol/serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Rpic_2225 phosphatidylserine decarboxylase related protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D Rpic_3015 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D Rpic_4171 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D Rpic_0345 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D Rpic_4172 phospholipase D/Transphosphatidylase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] D Rpic_0937 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] C 00565 Ether lipid metabolism D Rpic_3050 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D Rpic_4613 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D Rpic_0175 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:rpi00592] D Rpic_0350 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Rpic_2629 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:rpi01040] D Rpic_2718 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D Rpic_1863 Lysophospholipase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Rpic_0353 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:rpi00230] D Rpic_2199 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Rpic_0641 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Rpic_4380 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Rpic_1710 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Rpic_0250 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Rpic_2130 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Rpic_2389 phosphoribosylamine/glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Rpic_2722 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Rpic_1858 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D Rpic_2858 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Rpic_0496 phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D Rpic_0495 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Rpic_0494 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Rpic_2964 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Rpic_0380 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Rpic_0272 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Rpic_1048 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Rpic_2828 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D Rpic_1918 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Rpic_3057 phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D Rpic_1306 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Rpic_1055 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Rpic_2281 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Rpic_2246 xanthine dehydrogenase, small subunit K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4] D Rpic_2247 xanthine dehydrogenase, molybdopterin binding subunit K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D Rpic_3374 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] D Rpic_3375 molybdopterin dehydrogenase FAD-binding K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4] D Rpic_3376 (2Fe-2S)-binding domain protein K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit D Rpic_0998 glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Rpic_1308 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Rpic_2250 guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D Rpic_2276 Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Rpic_4403 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Rpic_3047 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Rpic_3046 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Rpic_2106 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Rpic_4657 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Rpic_3246 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D Rpic_2274 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Rpic_2018 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Rpic_1978 (p)ppGpp synthetase I, SpoT/RelA K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D Rpic_3586 RelA/SpoT domain protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5] D Rpic_1070 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Rpic_3036 PfkB domain protein K00856 ADK; adenosine kinase [EC:2.7.1.20] D Rpic_3922 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D Rpic_2249 adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2] D Rpic_3560 5'-Nucleotidase domain protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D Rpic_2810 Nucleoside-triphosphate--adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Rpic_1414 metallophosphoesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D Rpic_0625 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D Rpic_2685 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Rpic_2686 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Rpic_2082 FAD dependent oxidoreductase K22879 hpyO; FAD-dependent urate hydroxylase [EC:1.14.13.113] D Rpic_2256 hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D Rpic_2261 conserved hypothetical protein K13485 PRHOXNB; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97] D Rpic_4023 Asp/Glu/hydantoin racemase K16841 hpxA; allantoin racemase [EC:5.1.99.3] D Rpic_2260 urate catabolism protein K16842 hpxB; allantoinase [EC:3.5.2.5] D Rpic_3472 allantoicase K01477 alc; allantoicase [EC:3.5.3.4] D Rpic_3617 allantoin catabolism protein K14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26] D Rpic_3471 Ureidoglycolate hydrolase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3] D Rpic_2184 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Rpic_2185 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D Rpic_2187 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00240 Pyrimidine metabolism [PATH:rpi00240] D Rpic_2034 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Rpic_2036 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Rpic_0622 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Rpic_0623 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3] D Rpic_0363 dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3] D Rpic_1928 Dihydroorotate oxidase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D Rpic_0041 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Rpic_3018 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Rpic_1280 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Rpic_1055 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Rpic_2394 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Rpic_0969 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Rpic_0778 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Rpic_1048 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Rpic_2828 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D Rpic_2386 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D Rpic_0621 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Rpic_3560 5'-Nucleotidase domain protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D Rpic_2106 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Rpic_4657 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Rpic_2579 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D Rpic_4403 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Rpic_3047 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Rpic_3046 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Rpic_1425 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Rpic_2732 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Rpic_1709 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D Rpic_4378 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D Rpic_0818 Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D Rpic_4022 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Rpic_4903 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Rpic_0679 short-chain dehydrogenase/reductase SDR K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] D Rpic_0870 nitroreductase K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:rpi00250] D Rpic_2715 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Rpic_1181 Asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Rpic_1251 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Rpic_1201 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Rpic_2829 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Rpic_2577 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Rpic_1070 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Rpic_2964 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Rpic_0622 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Rpic_3721 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D Rpic_4318 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Rpic_0656 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Rpic_3722 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Rpic_3243 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Rpic_3242 glutamate synthase, NADH/NADPH, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Rpic_4838 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Rpic_0356 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D Rpic_3496 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Rpic_2034 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Rpic_2036 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Rpic_0062 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Rpic_2130 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:rpi00260] D Rpic_1012 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Rpic_2141 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Rpic_1202 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Rpic_2438 homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39] D Rpic_1203 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Rpic_0754 Threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Rpic_0678 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Rpic_0115 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D Rpic_0692 Gluconate 2-dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D Rpic_0899 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D Rpic_3481 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Rpic_0362 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Rpic_0209 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Rpic_0374 Phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Rpic_3984 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Rpic_3740 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Rpic_0773 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Rpic_1906 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Rpic_0679 short-chain dehydrogenase/reductase SDR K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] D Rpic_4847 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D Rpic_4331 Amine oxidase (flavin-containing) K00274 MAO; monoamine oxidase [EC:1.4.3.4] D Rpic_3489 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Rpic_3487 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Rpic_1944 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_1099 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_3488 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Rpic_2224 CDP-diacylglycerol/serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Rpic_3490 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Rpic_0325 threonine dehydratase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Rpic_0819 Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Rpic_4197 putative D-serine deaminase (D-serine dehydratase) protein K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D Rpic_2135 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Rpic_2137 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:rpi00270] D Rpic_1003 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Rpic_1908 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Rpic_0147 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Rpic_0149 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Rpic_4542 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Rpic_0036 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Rpic_1694 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Rpic_4125 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Rpic_4120 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Rpic_3891 Adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D Rpic_1918 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Rpic_0875 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Rpic_3656 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Rpic_2004 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D Rpic_1012 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Rpic_2141 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Rpic_1202 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Rpic_3723 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D Rpic_1991 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Rpic_4877 Cystathionine gamma-synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Rpic_4107 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Rpic_0200 glutamate/cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Rpic_0201 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Rpic_2431 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Rpic_2153 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Rpic_3490 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Rpic_0787 cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D Rpic_3984 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Rpic_3740 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Rpic_0773 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:rpi00280] D Rpic_4107 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Rpic_1944 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_1099 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_0124 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Rpic_3835 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Rpic_2177 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Rpic_0104 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Rpic_2632 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Rpic_0129 acyl-CoA dehydrogenase domain protein K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D Rpic_3114 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Rpic_4929 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Rpic_0350 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Rpic_2629 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Rpic_3976 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D Rpic_4274 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Rpic_3975 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Rpic_2566 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_1338 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_4273 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Rpic_0116 Carbamoyl-phosphate synthase L chain ATP-binding K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D Rpic_0120 Propionyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D Rpic_0118 Enoyl-CoA hydratase/isomerase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D Rpic_2061 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Rpic_0114 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Rpic_1378 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Rpic_1983 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Rpic_1982 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Rpic_0655 acetoacetyl-CoA synthase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D Rpic_0126 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1445 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_0414 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_4928 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1910 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1915 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rpi00290] D Rpic_0325 threonine dehydratase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Rpic_0819 Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Rpic_2145 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Rpic_1381 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Rpic_2144 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Rpic_1382 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Rpic_2143 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Rpic_2228 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Rpic_1228 thiamine pyrophosphate protein domain protein TPP-binding K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Rpic_4504 thiamine pyrophosphate protein domain protein TPP-binding K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Rpic_2227 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Rpic_2226 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Rpic_2676 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Rpic_2694 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Rpic_4107 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Rpic_1201 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Rpic_2223 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Rpic_4806 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:rpi00300] D Rpic_1202 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Rpic_1012 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Rpic_2141 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Rpic_0987 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Rpic_0566 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Rpic_0609 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Rpic_2769 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Rpic_2984 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Rpic_1266 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D Rpic_2703 aminotransferase class-III K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Rpic_1267 aminotransferase class I and II K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D Rpic_1263 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Rpic_0039 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Rpic_3257 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Rpic_0073 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D Rpic_0846 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D Rpic_3094 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Rpic_3093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:rpi00310] D Rpic_1098 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Rpic_1944 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_1099 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_0706 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Rpic_3114 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Rpic_4929 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Rpic_0126 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1445 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_0414 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_4928 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1910 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1915 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_4318 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Rpic_0656 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Rpic_3722 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Rpic_0743 L-carnitine dehydratase/bile acid-inducible protein F K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-] D Rpic_4029 coenzyme A transferase K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D Rpic_4028 3-oxoacid CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] D Rpic_4521 aminotransferase class IV K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Rpic_4901 FAD dependent oxidoreductase K26064 amaD; D-lysine oxidase D Rpic_3546 ornithine cyclodeaminase/mu-crystallin K19743 lhpI; 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] [EC:1.5.1.1] D Rpic_2566 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_1338 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:rpi00220] D Rpic_2830 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Rpic_2829 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Rpic_2577 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Rpic_0051 Arginase/agmatinase/formiminoglutamase K01476 E3.5.3.1; arginase [EC:3.5.3.1] D Rpic_2184 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Rpic_2185 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D Rpic_2187 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D Rpic_4838 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Rpic_0356 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D Rpic_1201 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Rpic_3824 GCN5-related N-acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1] D Rpic_1818 GCN5-related N-acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1] D Rpic_1078 amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D Rpic_3078 arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D Rpic_3717 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Rpic_0043 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Rpic_3616 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Rpic_2703 aminotransferase class-III K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Rpic_1905 acetylornithine deacetylase (ArgE) K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] D Rpic_3112 acetylornithine deacetylase (ArgE) K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:rpi00330] D Rpic_2578 Lysine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D Rpic_4120 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Rpic_4125 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Rpic_2566 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_1338 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_4264 GCN5-related N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D Rpic_4331 Amine oxidase (flavin-containing) K00274 MAO; monoamine oxidase [EC:1.4.3.4] D Rpic_1411 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Rpic_4329 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Rpic_0051 Arginase/agmatinase/formiminoglutamase K01476 E3.5.3.1; arginase [EC:3.5.3.1] D Rpic_0052 ornithine aminotransferase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D Rpic_2920 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Rpic_3496 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Rpic_3064 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Rpic_2980 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Rpic_2487 Prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Rpic_3807 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Rpic_3059 Procollagen-proline dioxygenase K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2] D Rpic_4521 aminotransferase class IV K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Rpic_3546 ornithine cyclodeaminase/mu-crystallin K19743 lhpI; 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] [EC:1.5.1.1] C 00340 Histidine metabolism [PATH:rpi00340] D Rpic_3230 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Rpic_1069 tRNA synthetase class II (G H P and S) K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D Rpic_3221 phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D Rpic_3222 Phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D Rpic_3224 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Rpic_3225 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Rpic_3223 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Rpic_3227 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D Rpic_3228 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_3368 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_0775 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_3229 Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D Rpic_2880 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Rpic_4767 Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Rpic_2881 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D Rpic_2878 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D Rpic_2795 formiminoglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8] D Rpic_2879 formiminoglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8] D Rpic_2566 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_1338 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_4331 Amine oxidase (flavin-containing) K00274 MAO; monoamine oxidase [EC:1.4.3.4] D Rpic_0821 conserved hypothetical protein K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44] C 00350 Tyrosine metabolism [PATH:rpi00350] D Rpic_3228 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_3368 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_0775 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_0875 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Rpic_3388 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Rpic_4300 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Rpic_4534 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Rpic_0240 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D Rpic_4535 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D Rpic_0155 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D Rpic_4331 Amine oxidase (flavin-containing) K00274 MAO; monoamine oxidase [EC:1.4.3.4] D Rpic_0535 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Rpic_4437 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Rpic_1957 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15] D Rpic_1958 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60] D Rpic_2683 5-carboxymethyl-2-hydroxymuconate isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] D Rpic_1956 5-carboxymethyl-2-hydroxymuconate isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] D Rpic_1960 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] D Rpic_1959 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] D Rpic_1955 2-oxo-hepta-3-ene-1,7-dioic acid hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-] D Rpic_1954 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D Rpic_4318 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Rpic_0656 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Rpic_3722 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Rpic_0239 5-carboxymethyl-2-hydroxymuconate Delta-isomerase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] C 00360 Phenylalanine metabolism [PATH:rpi00360] D Rpic_3549 phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D Rpic_4331 Amine oxidase (flavin-containing) K00274 MAO; monoamine oxidase [EC:1.4.3.4] D Rpic_3117 phenylacetate-CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D Rpic_3116 phenylacetic acid degradation protein PaaD K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-] D Rpic_4567 phenylacetate-CoA oxygenase, PaaG subunit K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] D Rpic_4566 phenylacetate-CoA oxygenase, PaaH subunit K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB D Rpic_4565 phenylacetate-CoA oxygenase, PaaI subunit K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] D Rpic_4564 phenylacetate-CoA oxygenase, PaaJ subunit K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD D Rpic_4563 phenylacetate-CoA oxygenase/reductase, PaaK subunit K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE D Rpic_3115 phenylacetate degradation, enoyl-CoA hydratase paaB K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D Rpic_3114 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Rpic_0090 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Rpic_2168 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Rpic_3228 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_3368 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_0775 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_0875 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Rpic_3388 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Rpic_4300 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Rpic_4307 D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D Rpic_0796 D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D Rpic_2467 D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D Rpic_4521 aminotransferase class IV K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Rpic_2922 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D Rpic_1411 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Rpic_4529 monooxygenase FAD-binding K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] C 00380 Tryptophan metabolism [PATH:rpi00380] D Rpic_0708 tryptophan 2,3-dioxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11] D Rpic_0710 arylformamidase K07130 kynB; arylformamidase [EC:3.5.1.9] D Rpic_0709 kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D Rpic_4622 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D Rpic_1098 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Rpic_1944 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_1099 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_0706 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Rpic_3114 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Rpic_4929 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Rpic_0126 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1445 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_0414 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_4928 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1910 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1915 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_4331 Amine oxidase (flavin-containing) K00274 MAO; monoamine oxidase [EC:1.4.3.4] D Rpic_2566 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_1338 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_4258 cytochrome P450 K14338 cypD_E; cytochrome P450 / NADPH-cytochrome P450 reductase [EC:1.14.14.1 1.6.2.4] D Rpic_1411 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Rpic_2922 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rpi00400] D Rpic_2897 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Rpic_1342 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Rpic_3247 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Rpic_3030 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D Rpic_4099 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D Rpic_4305 4-hydroxyphenylpyruvate dioxygenase K26400 quiC1; 3-dehydroshikimate dehydratase [EC:4.2.1.118] D Rpic_3021 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Rpic_3248 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Rpic_0777 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Rpic_1987 Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Rpic_3123 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Rpic_3124 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Rpic_3126 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Rpic_2138 Phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D Rpic_3127 Indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D Rpic_2135 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Rpic_2137 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Rpic_4860 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5] D Rpic_0774 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D Rpic_0776 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Rpic_2779 Arogenate dehydratase K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91] D Rpic_3228 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_3368 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_0775 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_0875 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Rpic_3549 phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:rpi00410] D Rpic_2970 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D Rpic_3721 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D Rpic_2566 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_1338 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_2600 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Rpic_4022 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Rpic_4903 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Rpic_4273 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Rpic_3114 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Rpic_4929 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Rpic_0124 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Rpic_4274 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Rpic_3975 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:rpi00430] D Rpic_2766 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Rpic_4299 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Rpic_4838 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Rpic_4317 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:rpi00440] D Rpic_4474 phosphonoacetaldehyde hydrolase K05306 phnX; phosphonoacetaldehyde hydrolase [EC:3.11.1.1] D Rpic_0507 Amidohydrolase 3 K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] C 00450 Selenocompound metabolism [PATH:rpi00450] D Rpic_1908 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Rpic_0147 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Rpic_0149 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Rpic_4542 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Rpic_0981 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Rpic_2557 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Rpic_2685 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Rpic_2686 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Rpic_2594 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:rpi00460] D Rpic_2766 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Rpic_4299 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Rpic_1181 Asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Rpic_1251 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Rpic_0678 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:rpi00470] D Rpic_1244 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Rpic_4521 aminotransferase class IV K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Rpic_3087 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Rpic_2103 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Rpic_3091 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Rpic_4197 putative D-serine deaminase (D-serine dehydratase) protein K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D Rpic_0039 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Rpic_3257 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Rpic_4451 Aldehyde Dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Rpic_4307 D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D Rpic_0796 D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D Rpic_2467 D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:rpi00480] D Rpic_2766 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Rpic_4299 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Rpic_0729 ChaC family protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D Rpic_2372 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D Rpic_2374 Allophanate hydrolase subunit 1 K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9] D Rpic_2373 urea amidolyase related protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D Rpic_3493 glutamate--cysteine ligase GCS2 K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D Rpic_0200 glutamate/cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Rpic_0201 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Rpic_2679 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Rpic_4680 Peptidase M1 membrane alanine aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Rpic_2265 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Rpic_3350 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_2965 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_1139 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_2167 putative GST-related protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_0845 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_0537 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_3504 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_3664 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_4827 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_3742 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D Rpic_2752 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Rpic_4867 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Rpic_2910 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D Rpic_0162 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D Rpic_3083 Redoxin domain protein K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27] D Rpic_4120 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:rpi00540] D Rpic_1290 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Rpic_3082 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Rpic_1145 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Rpic_1288 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Rpic_1004 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Rpic_1291 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Rpic_2807 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Rpic_0268 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Rpic_0970 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Rpic_0267 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Rpic_2809 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Rpic_0643 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Rpic_0037 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Rpic_0038 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Rpic_2078 Aspartyl/Asparaginyl beta-hydroxylase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D Rpic_4180 putative signal peptide protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D Rpic_0784 rfaE bifunctional protein K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167] D Rpic_0399 histidinol-phosphate phosphatase family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Rpic_4882 histidinol-phosphate phosphatase family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Rpic_0164 rfaE bifunctional protein K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70] D Rpic_0785 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D Rpic_0642 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D Rpic_0486 lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D Rpic_2401 O-antigen polymerase K02847 waaL; O-antigen ligase [EC:2.4.99.26] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rpi00541] D Rpic_3786 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Rpic_2442 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Rpic_4235 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Rpic_0783 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Rpic_0639 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Rpic_0640 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Rpic_4736 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Rpic_0638 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Rpic_0637 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Rpic_4734 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D Rpic_4735 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D Rpic_2702 oxidoreductase FAD/NAD(P)-binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D Rpic_1164 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Rpic_1158 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Rpic_1157 NAD-dependent epimerase/dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135] D Rpic_4737 Glutamine--scyllo-inositol transaminase K13010 per; perosamine synthetase [EC:2.6.1.102] D Rpic_0061 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Rpic_4693 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 00550 Peptidoglycan biosynthesis [PATH:rpi00550] D Rpic_3231 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Rpic_2827 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Rpic_3088 UDP-N-acetylmuramate/alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Rpic_3091 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Rpic_3094 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Rpic_3087 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Rpic_3093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Rpic_1282 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Rpic_0651 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Rpic_3422 phosphoesterase PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Rpic_3773 phosphoesterase PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Rpic_3092 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Rpic_3089 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Rpic_3020 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Rpic_3254 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Rpic_3687 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Rpic_3095 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Rpic_0183 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Rpic_0500 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:rpi00552] D Rpic_0651 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Rpic_3422 phosphoesterase PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Rpic_3773 phosphoesterase PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Rpic_4742 glycosyl transferase family 2 K22708 tarS; poly(ribitol-phosphate) beta-N-acetylglucosaminyltransferase [EC:2.4.1.355] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:rpi00543] D Rpic_4841 glycosyl transferase family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] D Rpic_1003 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Rpic_4559 acyltransferase 3 K16568 exoZ; exopolysaccharide production protein ExoZ B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:rpi00730] D Rpic_3642 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Rpic_3651 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D Rpic_0884 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Rpic_2002 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Rpic_3643 FAD dependent oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19] D Rpic_2426 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Rpic_3645 thiazole biosynthesis family protein K03149 thiG; thiazole synthase [EC:2.8.1.10] D Rpic_3646 thiamine monophosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Rpic_3014 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D Rpic_0811 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Rpic_3653 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Rpic_3654 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Rpic_2810 Nucleoside-triphosphate--adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:rpi00740] D Rpic_0662 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Rpic_0664 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Rpic_4191 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D Rpic_0661 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Rpic_0663 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Rpic_2725 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Rpic_1212 NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D Rpic_2199 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Rpic_3151 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:rpi00750] D Rpic_0717 pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D Rpic_4852 aldo/keto reductase K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65] D Rpic_0773 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Rpic_0393 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D Rpic_0931 pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D Rpic_1203 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:rpi00760] D Rpic_2715 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Rpic_4503 Aspartate dehydrogenase K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21] D Rpic_2717 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D Rpic_2716 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D Rpic_4654 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D Rpic_0896 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D Rpic_1048 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Rpic_2391 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Rpic_2562 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D Rpic_3016 CinA domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D Rpic_1446 Nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D Rpic_1074 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Rpic_2887 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D Rpic_2971 NAD/NADP transhydrogenase alpha subunit-like protein K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D Rpic_2969 NAD(P)(+) transhydrogenase (AB-specific) K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D Rpic_2972 NAD(P)(+) transhydrogenase (AB-specific) K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D Rpic_1881 Asp/Glu/hydantoin racemase K01799 nicE; maleate isomerase [EC:5.2.1.1] D Rpic_4021 Asp/Glu/hydantoin racemase K01799 nicE; maleate isomerase [EC:5.2.1.1] D Rpic_4318 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Rpic_0656 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Rpic_3722 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:rpi00770] D Rpic_2228 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Rpic_1228 thiamine pyrophosphate protein domain protein TPP-binding K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Rpic_4504 thiamine pyrophosphate protein domain protein TPP-binding K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Rpic_2227 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Rpic_2226 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Rpic_2676 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Rpic_2694 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Rpic_2865 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Rpic_4857 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D Rpic_3558 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D Rpic_0059 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D Rpic_2600 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Rpic_0166 putative transcriptional acitvator, Baf family K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D Rpic_2730 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Rpic_0245 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Rpic_3073 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D Rpic_0932 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D Rpic_4107 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Rpic_4022 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Rpic_4903 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Rpic_2970 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D Rpic_2566 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_1338 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:rpi00780] D Rpic_0216 Methyltransferase type 11 K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D Rpic_4775 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Rpic_4771 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Rpic_0303 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Rpic_4774 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Rpic_0919 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Rpic_4824 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_4773 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_2383 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_2567 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_0917 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_0416 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_1138 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_3842 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_1289 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Rpic_1013 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Rpic_1372 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Rpic_1144 Glycine C-acetyltransferase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Rpic_1371 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Rpic_1373 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D Rpic_0117 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D Rpic_0167 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:rpi00785] D Rpic_0179 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D Rpic_0178 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D Rpic_1944 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_1099 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_1947 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Rpic_4645 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D Rpic_4646 Transketolase central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D Rpic_1946 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Rpic_4647 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Rpic_1097 2-oxoglutarate dehydrogenase, E1 subunit K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Rpic_1098 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Rpic_3489 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Rpic_3487 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Rpic_3488 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:rpi00790] D Rpic_2425 protein of unknown function DUF198 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D Rpic_3653 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Rpic_3654 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Rpic_0798 Alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D Rpic_0343 NUDIX hydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67] D Rpic_0050 conserved hypothetical protein K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D Rpic_2863 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Rpic_2028 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Rpic_0817 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D Rpic_2133 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Rpic_0662 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Rpic_2868 para-aminobenzoate synthase, subunit I K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38] D Rpic_1330 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Rpic_3550 transcriptional coactivator/pterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Rpic_3549 phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D Rpic_1329 conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Rpic_0687 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Rpic_0324 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Rpic_0904 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Rpic_0481 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Rpic_1207 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Rpic_0814 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D Rpic_0902 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Rpic_1205 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Rpic_4802 conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D Rpic_0903 molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:rpi00670] D Rpic_0817 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D Rpic_1950 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Rpic_0678 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Rpic_2722 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Rpic_0380 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Rpic_3677 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Rpic_1195 formyl transferase domain protein K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Rpic_3487 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Rpic_0147 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Rpic_0149 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Rpic_0818 Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D Rpic_2074 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Rpic_3658 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Rpic_3661 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:rpi00860] D Rpic_1022 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Rpic_3145 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D Rpic_0610 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Rpic_3267 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Rpic_2571 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D Rpic_3498 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D Rpic_2390 Coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D Rpic_3483 oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D Rpic_2979 conserved hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D Rpic_2877 Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D Rpic_2570 protein of unknown function DUF513 hemX K13543 hemDX; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D Rpic_2684 uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D Rpic_0228 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Rpic_0227 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Rpic_2682 cobalamin (vitamin B12) biosynthesis CbiX protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D Rpic_2899 ATP/cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Rpic_2664 cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Rpic_2656 cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D Rpic_2658 cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D Rpic_0809 cobalamin biosynthesis protein CbiB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D Rpic_2659 L-threonine-O-3-phosphate decarboxylase K02225 cobC1; cobalamin biosynthesis protein CobC D Rpic_2657 Adenosylcobinamide-phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D Rpic_2662 cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D Rpic_2663 nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D Rpic_2661 alpha-ribazole phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D Rpic_0139 Ferritin Dps family protein K03594 bfr; bacterioferritin [EC:1.16.3.1] D Rpic_0206 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rpi00130] D Rpic_3837 putative 4-hydroxybenzoyl-CoA thioesterase protein K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] D Rpic_3024 Chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40] D Rpic_2921 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Rpic_0657 UbiD family decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D Rpic_3151 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Rpic_0768 ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D Rpic_0384 2-polyprenyl-6-methoxyphenol 4-hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D Rpic_0333 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D Rpic_3099 conserved hypothetical protein K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D Rpic_3903 Ribosyldihydronicotinamide dehydrogenase (quinone) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D Rpic_1995 flavoprotein WrbA K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D Rpic_2405 putative TRP repressor binding protein-like protein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D Rpic_3388 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Rpic_4300 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:rpi00900] D Rpic_2426 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Rpic_1284 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D Rpic_1903 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D Rpic_0251 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D Rpic_1902 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D Rpic_1059 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D Rpic_2710 hydroxymethylbutenyl pyrophosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D Rpic_0126 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1445 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_0414 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_4928 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1910 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1915 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_3151 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Rpic_2427 Polyprenyl synthetase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D Rpic_3068 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Rpic_1282 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Rpic_0812 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:rpi00906] D Rpic_1894 squalene synthase HpnD K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation [PATH:rpi00903] D Rpic_2566 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_1338 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_0315 Alpha/beta hydrolase fold-3 domain protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00907 Pinene, camphor and geraniol degradation [PATH:rpi00907] D Rpic_3114 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Rpic_4929 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Rpic_0105 short-chain dehydrogenase/reductase SDR K13774 atuB; citronellol/citronellal dehydrogenase D Rpic_0107 acyl-CoA dehydrogenase domain protein K11731 atuD; citronellyl-CoA dehydrogenase [EC:1.3.99.-] D Rpic_0108 Carbamoyl-phosphate synthase L chain ATP-binding K13777 atuF; geranyl-CoA carboxylase alpha subunit [EC:6.4.1.5] D Rpic_0106 carboxyl transferase K13778 atuC; geranyl-CoA carboxylase beta subunit [EC:6.4.1.5] D Rpic_2061 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Rpic_0114 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Rpic_1378 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Rpic_0350 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Rpic_2629 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Rpic_2989 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:rpi00523] D Rpic_0639 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Rpic_0640 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Rpic_4736 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Rpic_0638 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Rpic_0637 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D Rpic_0640 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D Rpic_4199 peptidase S45 penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] C 00332 Carbapenem biosynthesis [PATH:rpi00332] D Rpic_3064 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Rpic_2980 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:rpi00261] D Rpic_2685 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Rpic_2686 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Rpic_1012 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Rpic_2141 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Rpic_0987 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Rpic_0566 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Rpic_0609 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Rpic_2769 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Rpic_2984 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:rpi00521] D Rpic_4865 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Rpic_0641 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Rpic_1001 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Rpic_0639 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Rpic_0640 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Rpic_4736 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Rpic_0638 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Rpic_0637 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D Rpic_4865 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:rpi00525] D Rpic_0639 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Rpic_0640 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:rpi00401] D Rpic_0776 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Rpic_3228 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_3368 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_0775 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_0875 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis [PATH:rpi00405] D Rpic_0514 monooxygenase FAD-binding K20940 phzS; 5-methylphenazine-1-carboxylate 1-monooxygenase [EC:1.14.13.218] D Rpic_3123 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Rpic_3124 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Rpic_0916 cyclic nucleotide-binding protein K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Rpic_4824 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_4773 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_2383 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_2567 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_0917 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_0416 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_1138 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_3842 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_1013 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Rpic_4762 putative acyl-carrier protein K02078 acpP; acyl carrier protein D Rpic_4763 phosphopantetheine-binding K02078 acpP; acyl carrier protein D Rpic_0918 acyl carrier protein K02078 acpP; acyl carrier protein D Rpic_0310 acyl carrier protein K02078 acpP; acyl carrier protein D Rpic_4648 conserved hypothetical protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:rpi00999] D Rpic_0036 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Rpic_1694 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Rpic_3021 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:rpi00362] D Rpic_1364 Rieske (2Fe-2S) domain protein K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D Rpic_1365 benzoate 1,2-dioxygenase, small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D Rpic_1366 oxidoreductase FAD/NAD(P)-binding domain protein K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D Rpic_1367 short-chain dehydrogenase/reductase SDR K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D Rpic_1363 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D Rpic_1361 muconate and chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D Rpic_1362 muconolactone delta-isomerase K03464 catC; muconolactone D-isomerase [EC:5.3.3.4] D Rpic_2455 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D Rpic_0152 alpha/beta hydrolase fold K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D Rpic_2459 3-oxoacid CoA-transferase, A subunit K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6] D Rpic_2458 3-oxoacid CoA-transferase, B subunit K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6] D Rpic_0350 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Rpic_2629 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Rpic_2457 beta-ketoadipyl CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174] D Rpic_4631 Phenol hydroxylase subunit K16249 dmpK; phenol/toluene 2-monooxygenase (NADH) P0/A0 D Rpic_4630 Phenol 2-monooxygenase K16243 dmpL; phenol/toluene 2-monooxygenase (NADH) P1/A1 [EC:1.14.13.244 1.14.13.243] D Rpic_4629 monooxygenase component MmoB/DmpM K16244 dmpM; phenol/toluene 2-monooxygenase (NADH) P2/A2 [EC:1.14.13.244 1.14.13.243] D Rpic_4628 methane/phenol/toluene hydroxylase K16242 dmpN; phenol/toluene 2-monooxygenase (NADH) P3/A3 [EC:1.14.13.244 1.14.13.243] D Rpic_4627 Phenol hydroxylase conserved region K16245 dmpO; phenol/toluene 2-monooxygenase (NADH) P4/A4 [EC:1.14.13.244 1.14.13.243] D Rpic_4626 Oxidoreductase FAD-binding domain protein K16246 dmpP; phenol/toluene 2-monooxygenase (NADH) P5/A5 [EC:1.14.13.244 1.14.13.243] D Rpic_4624 catechol 2,3 dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2] D Rpic_4621 alpha/beta hydrolase fold K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9] D Rpic_4620 2-oxopent-4-enoate hydratase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132] D Rpic_4617 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43] D Rpic_4618 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] D Rpic_4622 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D Rpic_4924 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D Rpic_0753 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D Rpic_4616 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D Rpic_4619 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] D Rpic_1319 protocatechuate 3,4-dioxygenase, alpha subunit K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D Rpic_1318 protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] D Rpic_2456 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] D Rpic_2477 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Rpic_3905 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Rpic_2454 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Rpic_1334 conserved hypothetical protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Rpic_2447 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] D Rpic_3837 putative 4-hydroxybenzoyl-CoA thioesterase protein K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] D Rpic_4929 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Rpic_1447 3-hydroxyacyl-CoA dehydrogenase NAD-binding K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Rpic_0349 3-hydroxyacyl-CoA dehydrogenase NAD-binding K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Rpic_0706 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Rpic_3114 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Rpic_0090 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Rpic_2168 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Rpic_0126 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1445 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_0414 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_4928 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1910 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1915 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:rpi00627] D Rpic_0433 FAD dependent oxidoreductase K10215 ethA; monooxygenase [EC:1.14.13.-] D Rpic_1411 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Rpic_3568 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Rpic_3151 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Rpic_3836 AMP-dependent synthetase and ligase K08295 abmG; 2-aminobenzoate-CoA ligase [EC:6.2.1.32] D Rpic_3831 NADH:flavin oxidoreductase/NADH oxidase K09461 E1.14.13.40; anthraniloyl-CoA monooxygenase [EC:1.14.13.40] D Rpic_4029 coenzyme A transferase K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D Rpic_4028 3-oxoacid CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] D Rpic_3114 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Rpic_4258 cytochrome P450 K14338 cypD_E; cytochrome P450 / NADPH-cytochrome P450 reductase [EC:1.14.14.1 1.6.2.4] D Rpic_1086 glutamine synthetase, type I K20712 glnA; 3-(hydroxyamino)phenol mutase [EC:5.4.4.3] C 00364 Fluorobenzoate degradation [PATH:rpi00364] D Rpic_1364 Rieske (2Fe-2S) domain protein K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D Rpic_1365 benzoate 1,2-dioxygenase, small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D Rpic_1366 oxidoreductase FAD/NAD(P)-binding domain protein K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D Rpic_1367 short-chain dehydrogenase/reductase SDR K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D Rpic_1363 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D Rpic_2433 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D Rpic_4117 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D Rpic_1361 muconate and chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] C 00625 Chloroalkane and chloroalkene degradation [PATH:rpi00625] D Rpic_4437 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Rpic_0535 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Rpic_2566 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_1338 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Rpic_2494 PQQ-dependent dehydrogenase, methanol/ethanol family K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D Rpic_0098 alpha/beta hydrolase fold K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] D Rpic_1235 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:rpi00361] D Rpic_4631 Phenol hydroxylase subunit K16249 dmpK; phenol/toluene 2-monooxygenase (NADH) P0/A0 D Rpic_4630 Phenol 2-monooxygenase K16243 dmpL; phenol/toluene 2-monooxygenase (NADH) P1/A1 [EC:1.14.13.244 1.14.13.243] D Rpic_4629 monooxygenase component MmoB/DmpM K16244 dmpM; phenol/toluene 2-monooxygenase (NADH) P2/A2 [EC:1.14.13.244 1.14.13.243] D Rpic_4628 methane/phenol/toluene hydroxylase K16242 dmpN; phenol/toluene 2-monooxygenase (NADH) P3/A3 [EC:1.14.13.244 1.14.13.243] D Rpic_4627 Phenol hydroxylase conserved region K16245 dmpO; phenol/toluene 2-monooxygenase (NADH) P4/A4 [EC:1.14.13.244 1.14.13.243] D Rpic_4626 Oxidoreductase FAD-binding domain protein K16246 dmpP; phenol/toluene 2-monooxygenase (NADH) P5/A5 [EC:1.14.13.244 1.14.13.243] D Rpic_1363 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D Rpic_2433 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D Rpic_4117 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D Rpic_4500 ferredoxin K21607 pcpD; tetrachlorobenzoquinone reductase [EC:1.1.1.404] D Rpic_1361 muconate and chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D Rpic_4624 catechol 2,3 dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2] D Rpic_1235 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D Rpic_0098 alpha/beta hydrolase fold K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] C 00623 Toluene degradation [PATH:rpi00623] D Rpic_4631 Phenol hydroxylase subunit K16249 dmpK; phenol/toluene 2-monooxygenase (NADH) P0/A0 D Rpic_4630 Phenol 2-monooxygenase K16243 dmpL; phenol/toluene 2-monooxygenase (NADH) P1/A1 [EC:1.14.13.244 1.14.13.243] D Rpic_4629 monooxygenase component MmoB/DmpM K16244 dmpM; phenol/toluene 2-monooxygenase (NADH) P2/A2 [EC:1.14.13.244 1.14.13.243] D Rpic_4628 methane/phenol/toluene hydroxylase K16242 dmpN; phenol/toluene 2-monooxygenase (NADH) P3/A3 [EC:1.14.13.244 1.14.13.243] D Rpic_4627 Phenol hydroxylase conserved region K16245 dmpO; phenol/toluene 2-monooxygenase (NADH) P4/A4 [EC:1.14.13.244 1.14.13.243] D Rpic_4626 Oxidoreductase FAD-binding domain protein K16246 dmpP; phenol/toluene 2-monooxygenase (NADH) P5/A5 [EC:1.14.13.244 1.14.13.243] D Rpic_4632 methane/phenol/toluene hydroxylase K15760 tmoA; toluene monooxygenase system protein A [EC:1.14.13.236 1.14.13.-] D Rpic_4633 Toluene-4-monooxygenase system B K15761 tmoB; toluene monooxygenase system protein B [EC:1.14.13.236 1.14.13.-] D Rpic_4634 Rieske (2Fe-2S) domain protein K15762 tmoC; toluene monooxygenase system ferredoxin subunit D Rpic_4635 monooxygenase component MmoB/DmpM K15763 tmoD; toluene monooxygenase system protein D [EC:1.14.13.236 1.14.13.-] D Rpic_4636 methane/phenol/toluene hydroxylase K15764 tmoE; toluene monooxygenase system protein E [EC:1.14.13.236 1.14.13.-] D Rpic_4637 Oxidoreductase FAD-binding domain protein K15765 tmoF; toluene monooxygenase electron transfer component [EC:1.18.1.3] D Rpic_1363 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D Rpic_1361 muconate and chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D Rpic_2433 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D Rpic_4117 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation [PATH:rpi00622] D Rpic_1364 Rieske (2Fe-2S) domain protein K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D Rpic_1365 benzoate 1,2-dioxygenase, small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D Rpic_1366 oxidoreductase FAD/NAD(P)-binding domain protein K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D Rpic_1367 short-chain dehydrogenase/reductase SDR K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D Rpic_4624 catechol 2,3 dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2] D Rpic_4621 alpha/beta hydrolase fold K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9] D Rpic_4622 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D Rpic_4924 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D Rpic_0753 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D Rpic_4616 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D Rpic_4619 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] D Rpic_4620 2-oxopent-4-enoate hydratase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132] D Rpic_4617 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43] D Rpic_4618 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] C 00633 Nitrotoluene degradation [PATH:rpi00633] D Rpic_1046 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation D Rpic_0350 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Rpic_2629 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:rpi00643] D Rpic_4534 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Rpic_0240 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D Rpic_4535 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D Rpic_0155 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D Rpic_1411 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Rpic_4624 catechol 2,3 dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2] D Rpic_4621 alpha/beta hydrolase fold K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9] D Rpic_0346 coenzyme A transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] C 00791 Atrazine degradation D Rpic_2184 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Rpic_2185 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D Rpic_2187 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:rpi00930] D Rpic_3890 ThiJ/PfpI domain protein K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103] D Rpic_4109 Alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D Rpic_3985 SMP-30/Gluconolaconase/LRE domain protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D Rpic_4042 SMP-30/Gluconolaconase/LRE domain protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D Rpic_0315 Alpha/beta hydrolase fold-3 domain protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] D Rpic_4539 acyl-CoA dehydrogenase domain protein K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-] D Rpic_3114 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Rpic_4929 3-hydroxyacyl-CoA dehydrogenase NAD-binding K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation [PATH:rpi00621] D Rpic_4924 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D Rpic_0753 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D Rpic_4616 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D Rpic_4619 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] D Rpic_4620 2-oxopent-4-enoate hydratase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132] D Rpic_4617 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43] D Rpic_4618 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] C 00626 Naphthalene degradation [PATH:rpi00626] D Rpic_4437 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Rpic_0535 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation D Rpic_1319 protocatechuate 3,4-dioxygenase, alpha subunit K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D Rpic_1318 protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation [PATH:rpi00365] D Rpic_2055 AMP-dependent synthetase and ligase K16876 hmfD; 2-furoate---CoA ligase [EC:6.2.1.31] D Rpic_2052 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding K16877 hmfA; 2-furoyl-CoA dehydrogenase large subunit [EC:1.3.99.8] D Rpic_2053 Carbon-monoxide dehydrogenase (acceptor) K16878 hmfB; 2-furoyl-CoA dehydrogenase FAD binding subunit [EC:1.3.99.8] D Rpic_2054 (2Fe-2S)-binding domain protein K16879 hmfC; 2-furoyl-CoA dehydrogenase 2Fe-2S iron sulfur subunit [EC:1.3.99.8] C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:rpi03020] D Rpic_3314 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Rpic_3313 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Rpic_3271 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Rpic_2275 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:rpi03010] D Rpic_0779 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Rpic_1278 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Rpic_3291 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Rpic_3272 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Rpic_3280 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Rpic_1182 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Rpic_3301 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Rpic_3283 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Rpic_0367 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Rpic_3298 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Rpic_3273 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Rpic_3302 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Rpic_3274 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Rpic_3284 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Rpic_2220 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Rpic_0804 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Rpic_3288 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Rpic_1184 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Rpic_3293 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Rpic_2832 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Rpic_3749 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Rpic_3317 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Rpic_3294 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Rpic_3297 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Rpic_3296 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Rpic_3285 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Rpic_3282 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Rpic_3315 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Rpic_1185 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Rpic_3316 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Rpic_3318 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Rpic_0366 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Rpic_3287 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Rpic_3278 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Rpic_3290 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Rpic_3270 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Rpic_3281 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Rpic_0807 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Rpic_1974 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Rpic_3067 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Rpic_3292 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Rpic_3295 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Rpic_3286 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Rpic_0249 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25 D Rpic_3066 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Rpic_2713 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Rpic_3289 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Rpic_3279 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D Rpic_1025 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Rpic_0913 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Rpic_2714 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Rpic_3760 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D Rpic_1975 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Rpic_3275 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D Rpic_R0045 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Rpic_R0055 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Rpic_R0064 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Rpic_R0042 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Rpic_R0061 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Rpic_R0052 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Rpic_R0041 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Rpic_R0051 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Rpic_R0060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:rpi00970] D Rpic_R0057 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Rpic_R0014 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Rpic_R0043 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Rpic_R0062 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Rpic_R0053 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Rpic_R0026 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Rpic_R0056 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Rpic_R0006 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Rpic_R0032 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Rpic_R0012 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Rpic_R0034 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Rpic_R0016 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Rpic_R0019 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Rpic_R0009 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Rpic_R0005 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Rpic_R0001 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Rpic_R0015 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Rpic_R0049 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Rpic_R0003 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Rpic_R0007 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Rpic_R0008 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Rpic_R0018 tRNA-His K14226 tRNA-His; tRNA His D Rpic_R0054 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Rpic_R0063 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Rpic_R0044 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Rpic_R0030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Rpic_R0039 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Rpic_R0011 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Rpic_R0017 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Rpic_R0059 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Rpic_R0021 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Rpic_R0004 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Rpic_R0010 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Rpic_R0002 tRNA-Met K14230 tRNA-Met; tRNA Met D Rpic_R0022 tRNA-Met K14230 tRNA-Met; tRNA Met D Rpic_R0023 tRNA-Met K14230 tRNA-Met; tRNA Met D Rpic_R0035 tRNA-Met K14230 tRNA-Met; tRNA Met D Rpic_R0058 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Rpic_R0040 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Rpic_R0027 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Rpic_R0024 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Rpic_R0013 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Rpic_R0037 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Rpic_R0033 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Rpic_R0029 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Rpic_R0048 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Rpic_R0031 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Rpic_R0046 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Rpic_R0047 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Rpic_R0050 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Rpic_R0028 tRNA-Val K14237 tRNA-Val; tRNA Val D Rpic_R0025 tRNA-Val K14237 tRNA-Val; tRNA Val D Rpic_R0020 tRNA-Val K14237 tRNA-Val; tRNA Val D Rpic_1022 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Rpic_0511 Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Rpic_3692 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Rpic_3695 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Rpic_3691 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Rpic_0737 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Rpic_0744 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Rpic_0341 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Rpic_0402 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Rpic_0400 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Rpic_1977 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Rpic_2551 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Rpic_1008 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Rpic_2446 TM1410 hypothetical-related protein K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D Rpic_2594 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Rpic_3677 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Rpic_1195 formyl transferase domain protein K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Rpic_2441 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Rpic_2983 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Rpic_2726 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Rpic_0893 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Rpic_0137 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Rpic_3061 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Rpic_1060 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Rpic_1973 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Rpic_1972 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Rpic_0372 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Rpic_0985 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:rpi03060] D Rpic_3277 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Rpic_3320 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Rpic_2215 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Rpic_2959 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Rpic_2960 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Rpic_2958 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Rpic_3757 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Rpic_3079 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Rpic_0212 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Rpic_3056 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Rpic_R0068 ffs; SRP RNA K01983 ffs; SRP RNA D Rpic_0241 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Rpic_3219 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Rpic_3218 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Rpic_3217 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC D Rpic_0926 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Rpic_1864 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Rpic_1814 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Rpic_2727 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:rpi04122] D Rpic_0884 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Rpic_2002 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Rpic_2431 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Rpic_0756 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Rpic_2967 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Rpic_1207 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Rpic_0904 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Rpic_1206 molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein D Rpic_0207 UBA/THIF-type NAD/FAD binding protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D Rpic_0481 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Rpic_0814 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D Rpic_3644 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:rpi03018] D Rpic_3062 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Rpic_0905 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Rpic_0972 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Rpic_2219 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Rpic_0420 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Rpic_2409 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Rpic_1072 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Rpic_3305 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Rpic_1031 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Rpic_2870 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Rpic_3427 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_4400 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_0579 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_4653 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_1064 RNA chaperone Hfq K03666 hfq; host factor-I protein D Rpic_2019 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Rpic_3567 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Rpic_1700 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Rpic_2862 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:rpi03030] D Rpic_0467 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Rpic_2073 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Rpic_2403 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Rpic_1035 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Rpic_1424 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Rpic_2981 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Rpic_2678 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Rpic_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Rpic_1186 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Rpic_2325 DnaB domain protein helicase domain protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Rpic_2421 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Rpic_0277 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_1550 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_5019 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_2041 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Rpic_1292 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Rpic_2435 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Rpic_1272 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:rpi03410] D Rpic_0871 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Rpic_3129 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Rpic_0256 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Rpic_0254 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Rpic_2841 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Rpic_1009 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Rpic_2773 transcriptional regulator, AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Rpic_4549 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Rpic_1242 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Rpic_0042 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Rpic_1952 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Rpic_2435 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Rpic_0958 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Rpic_1272 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:rpi03420] D Rpic_1904 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Rpic_4441 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Rpic_0275 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Rpic_0876 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Rpic_0936 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D Rpic_2440 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Rpic_4129 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Rpic_2435 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Rpic_1272 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:rpi03430] D Rpic_0993 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Rpic_2836 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Rpic_2440 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Rpic_4129 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Rpic_3405 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D Rpic_2804 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Rpic_2428 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Rpic_0958 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Rpic_0277 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_1550 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_5019 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_2403 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Rpic_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Rpic_1035 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Rpic_2981 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Rpic_1424 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Rpic_0467 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Rpic_2073 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Rpic_2678 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Rpic_1272 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:rpi03440] D Rpic_0958 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Rpic_0277 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_1550 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_5019 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_0930 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Rpic_1038 recombination protein RecR K06187 recR; recombination protein RecR D Rpic_0471 recA protein K03553 recA; recombination protein RecA D Rpic_2435 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Rpic_0377 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Rpic_0376 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Rpic_0379 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Rpic_2955 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Rpic_2403 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Rpic_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Rpic_1035 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Rpic_2981 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Rpic_1424 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Rpic_0467 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Rpic_2073 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Rpic_2678 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Rpic_3497 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Rpic_1183 conserved hypothetical protein K02686 priB; primosomal replication protein N C 03450 Non-homologous end-joining [PATH:rpi03450] D Rpic_0502 Ku protein K10979 ku; DNA end-binding protein Ku D Rpic_0501 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:rpi03250] D Rpic_1006 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:rpi02010] D Rpic_1211 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D Rpic_1221 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Rpic_1222 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Rpic_1223 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Rpic_2244 extracellular solute-binding protein family 1 K05772 tupA; tungstate transport system substrate-binding protein D Rpic_2866 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein D Rpic_2867 ABC transporter related K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Rpic_0237 putative nitrate transporter protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D Rpic_0236 nitrate ABC transporter, inner membrane subunit K15577 nrtB; nitrate/nitrite transport system permease protein D Rpic_0235 nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D Rpic_2885 taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein D Rpic_2883 binding-protein-dependent transport systems inner membrane component K15552 tauC; taurine transport system permease protein D Rpic_2884 ABC transporter related K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D Rpic_4455 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_4089 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_1213 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_1214 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_3602 conserved hypothetical signal peptide protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_1042 NMT1/THI5 like domain protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_4038 NMT1/THI5 like domain protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_4459 NMT1/THI5 like domain protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_4009 putative periplasmic substrate-binding transmembrane protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_1216 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_4458 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_4010 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_4037 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_1044 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_1217 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_4011 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_4036 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_4457 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_1043 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_3851 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Rpic_0544 extracellular solute-binding protein family 1 K02020 modA; molybdate transport system substrate-binding protein D Rpic_4222 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Rpic_4221 ABC transporter related K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Rpic_3211 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Rpic_3214 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Rpic_4473 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component K02012 afuA; iron(III) transport system substrate-binding protein D Rpic_3215 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Rpic_4475 2-aminoethylphosphonate ABC transport system, permease protein K02011 afuB; iron(III) transport system permease protein D Rpic_4476 2-aminoethylphosphonate ABC transport system, ATP-binding protein component K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Rpic_3216 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Rpic_2784 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein D Rpic_3236 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Rpic_3238 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Rpic_0170 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Rpic_3239 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Rpic_0168 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Rpic_3235 putative signal peptide protein K07122 mlaB; phospholipid transport system transporter-binding protein D Rpic_3240 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Rpic_0169 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Rpic_2379 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Rpic_2377 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D Rpic_2378 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D Rpic_2376 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein D Rpic_0882 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein D Rpic_0880 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein D Rpic_0881 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Rpic_2997 Monosaccharide-transporting ATPase K10537 araF; L-arabinose transport system substrate-binding protein D Rpic_3008 Monosaccharide-transporting ATPase K10537 araF; L-arabinose transport system substrate-binding protein D Rpic_2995 Monosaccharide-transporting ATPase K10538 araH; L-arabinose transport system permease protein D Rpic_3010 Monosaccharide-transporting ATPase K10538 araH; L-arabinose transport system permease protein D Rpic_2996 ABC transporter related K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D Rpic_3009 ABC transporter related K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D Rpic_4095 periplasmic binding protein/LacI transcriptional regulator K23508 ytfQ; galactofuranose transport system substrate-binding protein D Rpic_4098 Monosaccharide-transporting ATPase K23509 ytfT; galactofuranose transport system permease protein D Rpic_4097 Monosaccharide-transporting ATPase K23509 ytfT; galactofuranose transport system permease protein D Rpic_4096 ABC transporter related K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D Rpic_4074 D-xylose ABC transporter, periplasmic substrate-binding protein K10543 xylF; D-xylose transport system substrate-binding protein D Rpic_4913 D-xylose ABC transporter, periplasmic substrate-binding protein K10543 xylF; D-xylose transport system substrate-binding protein D Rpic_4076 Monosaccharide-transporting ATPase K10544 xylH; D-xylose transport system permease protein D Rpic_4915 Monosaccharide-transporting ATPase K10544 xylH; D-xylose transport system permease protein D Rpic_4075 D-xylose ABC transporter, ATPase subunit K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D Rpic_4914 D-xylose ABC transporter, ATPase subunit K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D Rpic_3333 conserved hypothetical signal peptide protein K17321 glpV; glycerol transport system substrate-binding protein D Rpic_3330 binding-protein-dependent transport systems inner membrane component K17322 glpP; glycerol transport system permease protein D Rpic_3331 binding-protein-dependent transport systems inner membrane component K17323 glpQ; glycerol transport system permease protein D Rpic_3328 ABC transporter related K17324 glpS; glycerol transport system ATP-binding protein D Rpic_3329 ABC transporter related K17325 glpT; glycerol transport system ATP-binding protein D Rpic_1092 extracellular solute-binding protein family 1 K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D Rpic_1093 binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D Rpic_1094 binding-protein-dependent transport systems inner membrane component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D Rpic_1095 ABC transporter related K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D Rpic_3505 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D Rpic_2026 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D Rpic_2025 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D Rpic_2024 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Rpic_2023 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Rpic_0357 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Rpic_1475 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Rpic_3666 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Rpic_2466 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Rpic_0359 polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein D Rpic_0358 polar amino acid ABC transporter, inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein D Rpic_0360 ABC transporter related K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D Rpic_3495 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_3525 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2221 putative transporter signal peptide protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_0515 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2449 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_3537 putative substrate-binding periplasmic (PBP) ABC transporter protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_3793 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2692 putative amino acid-binding periplasmic (PBP) ABC transporter protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2709 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_4908 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_1454 putative Leu/Ile/Val-binding precursor signal peptide protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_0158 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2414 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_4699 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2453 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_3536 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_4526 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_3794 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_2708 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_4907 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_1453 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_4525 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_1452 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_2452 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_2707 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_3535 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_3795 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_4906 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_2451 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_3539 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_3796 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_2706 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_4905 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_1451 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_1450 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_2450 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_2705 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_3538 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_3797 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_4524 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_4904 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_0792 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Rpic_3593 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Rpic_0791 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Rpic_0790 ABC transporter related K02071 metN; D-methionine transport system ATP-binding protein D Rpic_2193 urea ABC transporter, urea binding protein K11959 urtA; urea transport system substrate-binding protein D Rpic_2192 urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein D Rpic_2191 urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein D Rpic_2190 urea ABC transporter, ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein D Rpic_2189 urea ABC transporter, ATP-binding protein UrtE K11963 urtE; urea transport system ATP-binding protein D Rpic_1253 extracellular solute-binding protein family 5 K13889 gsiB; glutathione transport system substrate-binding protein D Rpic_1254 binding-protein-dependent transport systems inner membrane component K13890 gsiC; glutathione transport system permease protein D Rpic_1255 binding-protein-dependent transport systems inner membrane component K13891 gsiD; glutathione transport system permease protein D Rpic_1252 oligopeptide/dipeptide ABC transporter, ATPase subunit K13892 gsiA; glutathione transport system ATP-binding protein D Rpic_1014 extracellular solute-binding protein family 5 K13893 yejA; microcin C transport system substrate-binding protein D Rpic_1015 binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein D Rpic_1016 binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein D Rpic_1017 ABC transporter related K13896 yejF; microcin C transport system ATP-binding protein D Rpic_1150 WcbD K10107 kpsE; capsular polysaccharide transport system permease protein D Rpic_1151 ABC-2 type transporter K09688 kpsM; capsular polysaccharide transport system permease protein D Rpic_1152 ABC transporter related K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D Rpic_2129 ABC-2 type transporter, NodJ family K09694 nodJ; lipooligosaccharide transport system permease protein D Rpic_2128 nodulation ABC transporter NodI K09695 nodI; lipooligosaccharide transport system ATP-binding protein D Rpic_0960 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Rpic_1691 protein of unknown function DUF214 K09808 lolC_E; lipoprotein-releasing system permease protein D Rpic_0961 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Rpic_2850 hypothetical protein K02196 ccmD; heme exporter protein D D Rpic_2849 heme exporter protein CcmC K02195 ccmC; heme exporter protein C D Rpic_2848 heme exporter protein CcmB K02194 ccmB; heme exporter protein B D Rpic_2847 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Rpic_2680 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Rpic_2681 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Rpic_0264 ABC transporter related K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Rpic_4063 putative NosY transmembrane protein K19341 nosY; Cu-processing system permease protein D Rpic_4062 ABC transporter related K19340 nosF; Cu-processing system ATP-binding protein D Rpic_2397 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Rpic_0354 ABC transporter related K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D Rpic_0836 ABC transporter related K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D Rpic_0331 ABC transporter domain protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:rpi02060] D Rpic_0204 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Rpic_0203 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Rpic_3879 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component D Rpic_0202 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Rpic_3108 phosphoenolpyruvate-protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D Rpic_3110 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Rpic_3109 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D Rpic_0261 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:rpi03070] D Rpic_0645 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Rpic_3399 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D Rpic_3390 putative general secretion pathway related transmembrane protein K02452 gspC; general secretion pathway protein C D Rpic_3401 general secretion pathway protein F K02455 gspF; general secretion pathway protein F D Rpic_3391 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D Rpic_3392 general secretion pathway protein H K02457 gspH; general secretion pathway protein H D Rpic_3393 general secretion pathway protein I K02458 gspI; general secretion pathway protein I D Rpic_3394 putative general secretory pathway J transmembrane protein K02459 gspJ; general secretion pathway protein J D Rpic_3395 General secretion pathway protein K K02460 gspK; general secretion pathway protein K D Rpic_3396 General secretion pathway L K02461 gspL; general secretion pathway protein L D Rpic_3397 General secretion pathway M protein K02462 gspM; general secretion pathway protein M D Rpic_3400 general secretory pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Rpic_2959 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Rpic_2960 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Rpic_3320 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Rpic_2215 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Rpic_3277 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Rpic_2958 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Rpic_3757 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Rpic_3079 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Rpic_0241 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Rpic_0212 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Rpic_3056 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Rpic_3219 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Rpic_3218 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Rpic_3217 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC D Rpic_1520 conserved hypothetical protein K03201 virB6; type IV secretion system protein VirB6 D Rpic_2643 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Rpic_2254 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG B B 09132 Signal transduction C 02020 Two-component system [PATH:rpi02020] D Rpic_2020 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Rpic_3737 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Rpic_2021 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Rpic_0939 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Rpic_3653 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Rpic_3654 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Rpic_0798 Alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D Rpic_3505 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D Rpic_2026 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D Rpic_4186 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Rpic_1899 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Rpic_1898 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Rpic_4185 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Rpic_0923 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Rpic_4861 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Rpic_4210 integral membrane sensor signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D Rpic_4211 two component transcriptional regulator, winged helix family K07664 baeR; two-component system, OmpR family, response regulator BaeR D Rpic_4184 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D Rpic_4183 acriflavin resistance protein K07788 mdtB; multidrug efflux pump D Rpic_4182 acriflavin resistance protein K07789 mdtC; multidrug efflux pump D Rpic_1781 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1759 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1717 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1842 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1741 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1718 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_1742 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_1760 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_1841 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_1780 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_1808 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Rpic_1647 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Rpic_4284 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Rpic_1809 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein D Rpic_1646 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein D Rpic_0576 integral membrane sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D Rpic_0575 two component transcriptional regulator, winged helix family K07666 qseB; two-component system, OmpR family, response regulator QseB D Rpic_4043 flagellar transcriptional activator K02403 flhD; flagellar transcriptional activator FlhD D Rpic_4044 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC D Rpic_4750 flagellin domain protein K02406 fliC; flagellin D Rpic_4070 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Rpic_4045 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D Rpic_3592 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D Rpic_3370 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D Rpic_3589 potassium-transporting ATPase, A subunit K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D Rpic_3590 K+-transporting ATPase, B subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D Rpic_3591 potassium-transporting ATPase, C subunit K01548 kdpC; potassium-transporting ATPase KdpC subunit D Rpic_3213 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Rpic_3604 histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Rpic_3553 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Rpic_3212 two component transcriptional regulator, winged helix family K07774 tctD; two-component system, OmpR family, response regulator TctD D Rpic_3603 two component transcriptional regulator, winged helix family K07774 tctD; two-component system, OmpR family, response regulator TctD D Rpic_0740 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Rpic_0741 protein of unknown function DUF1468 K07794 tctB; putative tricarboxylic transport membrane protein D Rpic_0227 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Rpic_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Rpic_3993 protein of unknown function DUF470 K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D Rpic_0841 efflux transporter, RND family, MFP subunit K18094 mexX; membrane fusion protein, multidrug efflux system D Rpic_0842 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18095 mexY; multidrug efflux pump D Rpic_2154 HpcH/HpaI aldolase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D Rpic_4674 multi-sensor signal transduction histidine kinase K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D Rpic_4675 two component transcriptional regulator, LuxR family K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D Rpic_4844 two component transcriptional regulator, LuxR family K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D Rpic_2520 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Rpic_4669 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Rpic_2519 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Rpic_4670 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Rpic_2517 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Rpic_4672 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Rpic_2518 nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D Rpic_4671 nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D Rpic_3357 two component transcriptional regulator, LuxR family K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D Rpic_3417 two component transcriptional regulator, LuxR family K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D Rpic_3595 two component transcriptional regulator, LuxR family K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D Rpic_4751 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Rpic_3358 multi-sensor hybrid histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D Rpic_3808 multi-sensor hybrid histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D Rpic_0759 multi-sensor hybrid histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D Rpic_3811 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein D Rpic_0763 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein D Rpic_4244 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Rpic_0597 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Rpic_0595 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Rpic_0596 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Rpic_4247 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Rpic_0592 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Rpic_4248 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Rpic_0591 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Rpic_4249 putative pilus assembly protein K02282 cpaE; pilus assembly protein CpaE D Rpic_0589 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Rpic_4250 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Rpic_0588 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Rpic_1525 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Rpic_5016 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Rpic_0587 type II secretion system protein K12510 tadB; tight adherence protein B D Rpic_4251 type II secretion system protein K12510 tadB; tight adherence protein B D Rpic_0586 type II secretion system protein K12511 tadC; tight adherence protein C D Rpic_4252 type II secretion system protein K12511 tadC; tight adherence protein C D Rpic_4253 Tetratricopeptide TPR_2 repeat protein K27079 tadD; tight adherence protein D D Rpic_4255 putative transmembrane protein K27080 tadG; tight adherence protein G D Rpic_1276 UTP-GlnB uridylyltransferase, GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D Rpic_2560 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Rpic_4681 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Rpic_1088 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Rpic_1089 nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Rpic_3672 multi-sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Rpic_3671 two component transcriptional regulator, Fis family K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D Rpic_4029 coenzyme A transferase K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D Rpic_4028 3-oxoacid CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] D Rpic_0126 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1445 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_0414 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_4928 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1910 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1915 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_0187 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Rpic_3788 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Rpic_0188 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Rpic_3789 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Rpic_3473 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein D Rpic_0186 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein D Rpic_3053 multi-sensor signal transduction histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D Rpic_3052 two component, sigma54 specific, transcriptional regulator, Fis family K02667 pilR; two-component system, NtrC family, response regulator PilR D Rpic_3770 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Rpic_0263 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Rpic_0478 type 4 fimbrial pilin signal peptide protein K02650 pilA; type IV pilus assembly protein PilA D Rpic_0477 putative type 4 fimbrial pilin signal peptide protein K02650 pilA; type IV pilus assembly protein PilA D Rpic_0480 pilin subfamily protein K02650 pilA; type IV pilus assembly protein PilA D Rpic_4052 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Rpic_0509 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_4051 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_3412 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_0536 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Rpic_0995 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_0996 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_3042 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_3501 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Rpic_4237 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_2095 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_4696 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D Rpic_4050 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D Rpic_3951 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Rpic_4049 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Rpic_4048 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Rpic_4834 putative CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Rpic_4047 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Rpic_4055 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Rpic_4831 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Rpic_4054 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Rpic_4573 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Rpic_0615 methyl-accepting chemotaxis sensory transducer K02660 pilJ; twitching motility protein PilJ D Rpic_0614 CheW protein K02659 pilI; twitching motility protein PilI D Rpic_0616 CheA signal transduction histidine kinase K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D Rpic_0612 response regulator receiver protein K02657 pilG; twitching motility two-component system response regulator PilG D Rpic_0613 response regulator receiver protein K02658 pilH; twitching motility two-component system response regulator PilH D Rpic_3141 GAF sensor signal transduction histidine kinase K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3] D Rpic_0360 ABC transporter related K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D Rpic_0359 polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein D Rpic_0358 polar amino acid ABC transporter, inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein D Rpic_0357 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Rpic_1475 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Rpic_3666 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Rpic_2466 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Rpic_0023 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_4483 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_3408 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_4026 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_4858 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_3712 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Rpic_3711 two component transcriptional regulator, Fis family K15012 regA; two-component system, response regulator RegA D Rpic_3206 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Rpic_1794 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Rpic_3205 Cytochrome b/b6 domain K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Rpic_3204 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Rpic_1791 cytochrome c class I K08738 CYC; cytochrome c D Rpic_3458 cytochrome c class I K08738 CYC; cytochrome c D Rpic_2493 cytochrome c class I K08738 CYC; cytochrome c D Rpic_2536 cytochrome c class I K08738 CYC; cytochrome c D Rpic_1104 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Rpic_1105 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Rpic_1107 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Rpic_4159 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Rpic_4158 cytochrome bd ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Rpic_0645 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Rpic_2974 regulatory protein K19620 phcB; extracellular factor (EF) 3-hydroxypalmitic acid methyl ester biosynthesis protein D Rpic_2975 integral membrane sensor signal transduction histidine kinase K19621 phcS; two-component system, sensor histidine kinase PhcS [EC:2.7.13.3] D Rpic_2976 response regulator receiver sensor signal transduction histidine kinase K19622 phcR; two-component system, response regulator PhcR D Rpic_2987 transcriptional regulator, LysR family K19624 phcA; LysR family transcriptional regulator, virulence genes transcriptional regulator D Rpic_1161 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Rpic_4693 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Rpic_4793 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:rpi04148] D Rpic_0051 Arginase/agmatinase/formiminoglutamase K01476 E3.5.3.1; arginase [EC:3.5.3.1] D Rpic_3206 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Rpic_1794 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:rpi02024] D Rpic_1064 RNA chaperone Hfq K03666 hfq; host factor-I protein D Rpic_3123 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Rpic_3124 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Rpic_0629 rhamnosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] D Rpic_2897 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Rpic_1342 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Rpic_0576 integral membrane sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D Rpic_0575 two component transcriptional regulator, winged helix family K07666 qseB; two-component system, OmpR family, response regulator QseB D Rpic_4043 flagellar transcriptional activator K02403 flhD; flagellar transcriptional activator FlhD D Rpic_4044 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC D Rpic_3370 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D Rpic_2645 P-type conjugative transfer ATPase TrbB K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8] D Rpic_2646 Conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC D Rpic_1523 conserved hypothetical protein K20529 trbD; type IV secretion system protein TrbD D Rpic_5014 type IV secretory pathway VirB3 family protein K20529 trbD; type IV secretion system protein TrbD D Rpic_2647 putative conjugal transfer TrbD transmembrane protein K20529 trbD; type IV secretion system protein TrbD D Rpic_1522 type IV secretory pathway VirB4 components-like protein K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D Rpic_5013 Type IV secretory pathway VirB4 protein-like protein K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D Rpic_2648 AAA ATPase K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D Rpic_3193 P-type conjugative transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ D Rpic_5012 hypothetical protein K20266 trbJ; type IV secretion system protein TrbJ D Rpic_2649 P-type conjugative transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ D Rpic_1521 conserved hypothetical protein K20266 trbJ; type IV secretion system protein TrbJ D Rpic_2650 P-type conjugative transfer protein TrbL K07344 trbL; type IV secretion system protein TrbL D Rpic_3191 hypothetical protein K07344 trbL; type IV secretion system protein TrbL D Rpic_1526 conserved hypothetical protein K20531 trbF; type IV secretion system protein TrbF D Rpic_2651 Conjugal transfer protein K20531 trbF; type IV secretion system protein TrbF D Rpic_5009 hypothetical protein K20531 trbF; type IV secretion system protein TrbF D Rpic_1527 Conjugal transfer protein TrbG/VirB9/CagX K20532 trbG; type IV secretion system protein TrbG D Rpic_2652 P-type conjugative transfer protein TrbG K20532 trbG; type IV secretion system protein TrbG D Rpic_5008 Conjugal transfer protein TrbG/VirB9/CagX K20532 trbG; type IV secretion system protein TrbG D Rpic_1528 conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D Rpic_2653 conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D Rpic_5007 conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D Rpic_1468 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Rpic_1418 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Rpic_1470 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Rpic_1416 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Rpic_1417 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Rpic_1469 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Rpic_1467 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Rpic_1415 ABC transporter related K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Rpic_3495 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_3525 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2221 putative transporter signal peptide protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_0515 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2449 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_3537 putative substrate-binding periplasmic (PBP) ABC transporter protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_3793 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2692 putative amino acid-binding periplasmic (PBP) ABC transporter protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2709 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_4908 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_1454 putative Leu/Ile/Val-binding precursor signal peptide protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_0158 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2414 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_4699 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2453 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_3536 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_4526 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_3794 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_2708 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_4907 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_1453 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_4525 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_1452 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_2452 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_2707 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_3535 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_3795 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_4906 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_2451 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_3539 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_3796 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_2706 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_4905 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_1451 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_1450 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_2450 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_2705 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_3538 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_3797 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_4524 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_4904 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_3685 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_3104 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_0413 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_0109 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_3980 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_2412 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_0023 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_4483 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_3408 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_4026 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_4858 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_0664 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Rpic_3747 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Rpic_2161 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Rpic_3706 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Rpic_2087 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Rpic_2083 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Rpic_2084 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Rpic_2085 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Rpic_2086 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Rpic_3757 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Rpic_2890 peptidase S8 and S53 subtilisin kexin sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Rpic_2891 peptidase S8 and S53 subtilisin kexin sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Rpic_3320 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Rpic_2215 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Rpic_3277 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Rpic_2958 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Rpic_3079 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Rpic_0241 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Rpic_0212 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Rpic_3056 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Rpic_3050 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D Rpic_4613 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D Rpic_0175 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:rpi02030] D Rpic_0509 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_4051 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_3412 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_0536 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Rpic_0995 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_0996 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_3042 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_3501 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Rpic_4237 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_2095 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_4696 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D Rpic_4050 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D Rpic_3951 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Rpic_0882 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein D Rpic_4048 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Rpic_4834 putative CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Rpic_4049 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Rpic_4047 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Rpic_4055 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Rpic_4831 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Rpic_4056 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ D Rpic_4054 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Rpic_4573 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Rpic_4053 CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D Rpic_4052 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Rpic_4730 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Rpic_4754 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Rpic_4755 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Rpic_4045 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D Rpic_4046 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:rpi02040] D Rpic_4732 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Rpic_4743 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Rpic_4731 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Rpic_4730 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Rpic_4729 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Rpic_4728 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Rpic_4727 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Rpic_4726 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Rpic_4753 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Rpic_4754 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Rpic_4755 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Rpic_4756 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ D Rpic_4757 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Rpic_4758 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Rpic_4759 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Rpic_4067 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Rpic_4066 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Rpic_4792 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D Rpic_1755 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Rpic_4791 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Rpic_4790 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Rpic_4789 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Rpic_4788 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE D Rpic_4787 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Rpic_4786 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Rpic_4785 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Rpic_4784 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Rpic_4783 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D Rpic_4782 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Rpic_4781 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Rpic_4750 flagellin domain protein K02406 fliC; flagellin D Rpic_4749 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Rpic_4442 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Rpic_4748 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Rpic_4747 putative flagellar protein FliT K02423 fliT; flagellar protein FliT D Rpic_3139 conserved hypothetical protein K02423 fliT; flagellar protein FliT D Rpic_4045 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D Rpic_4046 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Rpic_4793 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Rpic_4794 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D Rpic_2420 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Rpic_4043 flagellar transcriptional activator K02403 flhD; flagellar transcriptional activator FlhD D Rpic_4044 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC D Rpic_3770 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Rpic_0263 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Rpic_4070 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Rpic_0972 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:rpi04980] D Rpic_2899 ATP/cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Rpic_0147 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Rpic_0149 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:rpi01501] D Rpic_0047 major facilitator superfamily MFS_1 K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Rpic_0933 Beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Rpic_0841 efflux transporter, RND family, MFP subunit K18094 mexX; membrane fusion protein, multidrug efflux system D Rpic_0842 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18095 mexY; multidrug efflux pump D Rpic_3745 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Rpic_3746 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Rpic_3747 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Rpic_0645 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Rpic_3254 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Rpic_3687 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Rpic_3095 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Rpic_3817 Beta-lactamase K21276 blaOXA-22; beta-lactamase class D OXA-22 [EC:3.5.2.6] D Rpic_3962 Beta-lactamase K21277 blaOXA-60; beta-lactamase class D OXA-60 [EC:3.5.2.6] C 01502 Vancomycin resistance [PATH:rpi01502] D Rpic_3087 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Rpic_1244 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Rpic_3093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Rpic_3092 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Rpic_3089 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rpi01503] D Rpic_1196 glycosyl transferase family 2 K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D Rpic_1193 polysaccharide deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D Rpic_2815 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Rpic_0923 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Rpic_4861 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Rpic_0135 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Rpic_1006 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Rpic_3745 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Rpic_3746 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Rpic_0645 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Rpic_1290 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Rpic_3993 protein of unknown function DUF470 K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:rpi01000] C 01001 Protein kinases [BR:rpi01001] D Rpic_2020 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Rpic_4186 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Rpic_1899 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Rpic_4210 integral membrane sensor signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D Rpic_1781 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1759 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1717 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1842 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1741 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_0576 integral membrane sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D Rpic_3592 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D Rpic_3213 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Rpic_3604 histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Rpic_3553 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Rpic_4862 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Rpic_2942 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Rpic_3625 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Rpic_1674 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Rpic_4983 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Rpic_4674 multi-sensor signal transduction histidine kinase K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D Rpic_3358 multi-sensor hybrid histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D Rpic_3808 multi-sensor hybrid histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D Rpic_0759 multi-sensor hybrid histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D Rpic_3728 integral membrane sensor signal transduction histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D Rpic_1088 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Rpic_3672 multi-sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Rpic_3053 multi-sensor signal transduction histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D Rpic_0187 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Rpic_3788 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Rpic_4048 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Rpic_4834 putative CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Rpic_0616 CheA signal transduction histidine kinase K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D Rpic_3141 GAF sensor signal transduction histidine kinase K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3] D Rpic_3712 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Rpic_2975 integral membrane sensor signal transduction histidine kinase K19621 phcS; two-component system, sensor histidine kinase PhcS [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:rpi01009] D Rpic_3656 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Rpic_0851 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Rpic_2279 protein serine/threonine phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] D Rpic_1906 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:rpi01002] D Rpic_1814 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Rpic_2727 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Rpic_3072 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Rpic_4245 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Rpic_0594 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Rpic_2368 pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D Rpic_3959 pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D Rpic_0998 glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Rpic_1308 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Rpic_2130 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Rpic_3243 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Rpic_0062 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Rpic_0097 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124] D Rpic_0271 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124] D Rpic_3890 ThiJ/PfpI domain protein K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103] D Rpic_4680 Peptidase M1 membrane alanine aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Rpic_2265 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Rpic_1951 Oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D Rpic_0242 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Rpic_0243 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Rpic_2679 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Rpic_3377 peptidase M20 K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11] D Rpic_1263 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Rpic_4704 peptidase M20 K13049 PM20D1; carboxypeptidase PM20D1 [EC:3.4.17.-] D Rpic_1410 amidohydrolase K01451 hipO; hippurate hydrolase [EC:3.5.1.32] D Rpic_1277 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Rpic_0385 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Rpic_2029 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Rpic_1702 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Rpic_4385 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Rpic_0812 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D Rpic_3675 peptidase M48 Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Rpic_0482 peptidase M48 Ste24p K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D Rpic_1285 membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Rpic_1257 peptidase M55 D-aminopeptidase K16203 dppA1; D-amino peptidase [EC:3.4.11.-] D Rpic_1027 protein of unknown function DUF980 K09933 mtfA; MtfA peptidase D Rpic_1256 peptidase S58 DmpA K01266 dmpA; D-aminopeptidase [EC:3.4.11.19] D Rpic_0923 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Rpic_4861 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Rpic_3209 protease Do K04772 degQ; serine protease DegQ [EC:3.4.21.-] D Rpic_2890 peptidase S8 and S53 subtilisin kexin sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Rpic_2891 peptidase S8 and S53 subtilisin kexin sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Rpic_0183 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Rpic_1937 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D Rpic_0500 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Rpic_1869 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Rpic_1572 AAA ATPase central domain protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Rpic_1690 AAA ATPase central domain protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Rpic_1867 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Rpic_2926 AAA ATPase central domain protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Rpic_4970 AAA ATPase central domain protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Rpic_4974 peptidase S24 and S26 domain protein K01356 lexA; repressor LexA [EC:3.4.21.88] D Rpic_1179 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88] D Rpic_0926 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Rpic_1864 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Rpic_2487 Prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Rpic_3807 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Rpic_0208 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Rpic_4199 peptidase S45 penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D Rpic_0909 peptidase S49 K04773 sppA; protease IV [EC:3.4.21.-] D Rpic_1332 Muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D Rpic_3707 20S proteasome A and B subunits K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D Rpic_1251 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Rpic_2766 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Rpic_4299 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Rpic_2112 peptidase U32 K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D Rpic_4663 peptidase U32 K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D Rpic_2113 peptidase U32 K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D Rpic_4664 peptidase U32 K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D Rpic_0816 peptidase U62 modulator of DNA gyrase K03592 pmbA; PmbA protein D Rpic_2896 peptidase U62 modulator of DNA gyrase K03568 tldD; TldD protein D Rpic_3310 alpha-2-macroglobulin domain protein K06894 yfhM; alpha-2-macroglobulin D Rpic_1067 HflC protein K04087 hflC; modulator of FtsH protease HflC D Rpic_1066 HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:rpi01003] D Rpic_3771 glycosyl transferase group 1 K14335 pimC; alpha-1,6-mannosyltransferase [EC:2.4.1.-] D Rpic_0598 conserved hypothetical protein K13669 pimE; alpha-1,2-mannosyltransferase [EC:2.4.1.-] D Rpic_3940 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21] D Rpic_3020 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Rpic_3254 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Rpic_2469 glycosyl transferase group 1 K21011 pelF; polysaccharide biosynthesis protein PelF D Rpic_4742 glycosyl transferase family 2 K22708 tarS; poly(ribitol-phosphate) beta-N-acetylglucosaminyltransferase [EC:2.4.1.355] D Rpic_3155 glycosyl transferase family 2 K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-] D Rpic_4841 glycosyl transferase family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] D Rpic_4230 alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] C 01005 Lipopolysaccharide biosynthesis proteins [BR:rpi01005] D Rpic_1290 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Rpic_1291 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Rpic_3082 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Rpic_1145 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Rpic_1288 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Rpic_1004 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Rpic_2807 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Rpic_0037 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Rpic_0038 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Rpic_2078 Aspartyl/Asparaginyl beta-hydroxylase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D Rpic_0643 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Rpic_4180 putative signal peptide protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D Rpic_0970 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Rpic_2809 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Rpic_0267 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Rpic_0268 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Rpic_0784 rfaE bifunctional protein K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167] D Rpic_0164 rfaE bifunctional protein K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70] D Rpic_0642 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D Rpic_0486 lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D Rpic_2401 O-antigen polymerase K02847 waaL; O-antigen ligase [EC:2.4.99.26] D Rpic_0399 histidinol-phosphate phosphatase family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Rpic_4882 histidinol-phosphate phosphatase family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Rpic_0785 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D Rpic_0629 rhamnosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] D Rpic_1751 glycosyl transferase family 2 K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] D Rpic_0600 glycosyl transferase family 2 K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rpi01011] D Rpic_3231 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Rpic_2827 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Rpic_3088 UDP-N-acetylmuramate/alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Rpic_3091 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Rpic_3094 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Rpic_3087 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Rpic_1244 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Rpic_2103 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Rpic_1332 Muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D Rpic_3092 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Rpic_3089 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Rpic_0651 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Rpic_3422 phosphoesterase PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Rpic_3773 phosphoesterase PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Rpic_2833 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Rpic_3254 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Rpic_3687 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Rpic_3095 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Rpic_0183 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Rpic_0500 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Rpic_1937 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D Rpic_3020 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Rpic_3662 Lytic transglycosylase catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Rpic_3118 MltA domain protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D Rpic_0788 lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Rpic_2038 MLTD_N domain protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D Rpic_1426 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D Rpic_3465 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Rpic_2815 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Rpic_3051 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:rpi01004] D Rpic_0916 cyclic nucleotide-binding protein K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Rpic_0915 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Rpic_4775 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Rpic_4771 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Rpic_0303 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Rpic_4774 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Rpic_0919 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Rpic_4824 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_4773 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_2383 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_2567 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_0917 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_0416 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_1138 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_3842 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Rpic_1289 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Rpic_1013 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Rpic_1863 Lysophospholipase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Rpic_0353 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D Rpic_2718 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D Rpic_2099 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_3974 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_4143 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_4644 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Rpic_2037 propionate/CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D Rpic_0655 acetoacetyl-CoA synthase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D Rpic_3685 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_3104 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_0413 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_0109 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_3980 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_2412 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_0318 AMP-dependent synthetase and ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D Rpic_0727 AMP-dependent synthetase and ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D Rpic_0914 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Rpic_2823 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Rpic_0624 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Rpic_0398 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:rpi01008] C 01006 Prenyltransferases [BR:rpi01006] D Rpic_2427 Polyprenyl synthetase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D Rpic_3068 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Rpic_1282 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Rpic_1894 squalene synthase HpnD K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D Rpic_2837 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Rpic_2921 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Rpic_0228 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:rpi01007] D Rpic_1022 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Rpic_0737 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Rpic_2408 Glutamate--tRNA ligase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Rpic_0372 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Rpic_0985 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Rpic_1008 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Rpic_0137 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Rpic_2594 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Rpic_2726 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Rpic_2441 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Rpic_2983 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Rpic_0893 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Rpic_0341 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Rpic_1060 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Rpic_0402 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Rpic_0400 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Rpic_2551 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Rpic_3061 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Rpic_1977 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Rpic_0744 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Rpic_1973 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Rpic_1972 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Rpic_2446 TM1410 hypothetical-related protein K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D Rpic_1201 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Rpic_0875 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Rpic_2166 aminotransferase class I and II K14287 ybdL; methionine transaminase [EC:2.6.1.88] D Rpic_1267 aminotransferase class I and II K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D Rpic_3228 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_3368 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_0775 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Rpic_4847 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D Rpic_1372 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Rpic_1144 Glycine C-acetyltransferase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Rpic_4273 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Rpic_0052 ornithine aminotransferase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D Rpic_2703 aminotransferase class-III K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Rpic_3721 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D Rpic_1371 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Rpic_0610 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Rpic_4521 aminotransferase class IV K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Rpic_4107 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Rpic_2868 para-aminobenzoate synthase, subunit I K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38] D Rpic_0773 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Rpic_4737 Glutamine--scyllo-inositol transaminase K13010 per; perosamine synthetase [EC:2.6.1.102] C 00199 Cytochrome P450 [BR:rpi00199] D Rpic_4258 cytochrome P450 K14338 cypD_E; cytochrome P450 / NADPH-cytochrome P450 reductase [EC:1.14.14.1 1.6.2.4] C 00194 Photosynthesis proteins [BR:rpi00194] D Rpic_3511 cyclic nucleotide-binding protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Rpic_4469 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Rpic_3512 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Rpic_3513 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Rpic_3514 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Rpic_3515 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Rpic_3516 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Rpic_3517 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Rpic_3518 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Rpic_3519 conserved hypothetical protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:rpi03000] D Rpic_1967 transcriptional regulator, AraC family K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D Rpic_0034 transcriptional regulator, AraC family K13652 K13652; AraC family transcriptional regulator D Rpic_4214 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D Rpic_4111 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D Rpic_2856 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Rpic_2773 transcriptional regulator, AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Rpic_2271 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Rpic_0181 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Rpic_3000 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Rpic_1327 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Rpic_4541 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D Rpic_4556 transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D Rpic_2953 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Rpic_2012 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Rpic_2691 transcriptional regulator, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D Rpic_1224 transcriptional regulator, LysR family K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D Rpic_4938 transcriptional regulator, LysR family K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator D Rpic_1408 transcriptional regulator, LysR family K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D Rpic_4814 transcriptional regulator, LysR family K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D Rpic_4227 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D Rpic_2051 transcriptional regulator, LysR family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D Rpic_2987 transcriptional regulator, LysR family K19624 phcA; LysR family transcriptional regulator, virulence genes transcriptional regulator D Rpic_0428 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D Rpic_0355 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D Rpic_4470 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D Rpic_4477 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D Rpic_1360 transcriptional regulator, LysR family K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D Rpic_3326 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D Rpic_0561 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D Rpic_4073 transcriptional regulator, AraC family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Rpic_0879 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Rpic_4918 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Rpic_0693 transcriptional regulator, LacI family K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D Rpic_3107 transcriptional regulator, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D Rpic_4081 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D Rpic_2882 transcriptional regulator, histidine utilization repressor, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D Rpic_2152 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D Rpic_4094 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D Rpic_4012 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D Rpic_3846 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D Rpic_4797 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D Rpic_0016 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Rpic_3731 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Rpic_0945 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Rpic_3403 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Rpic_3720 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Rpic_3611 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Rpic_4641 transcriptional regulator, GntR family K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator D Rpic_3744 transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D Rpic_3719 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator D Rpic_1045 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Rpic_4611 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Rpic_0110 transcriptional regulator, TetR family K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D Rpic_4296 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Rpic_0797 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Rpic_3387 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Rpic_3548 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Rpic_4298 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Rpic_0711 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Rpic_2001 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D Rpic_4745 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Rpic_3444 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Rpic_3960 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Rpic_1783 transcriptional regulator, MerR family K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D Rpic_1788 mercuric resistence transcriptional repressor, MerD, MerR family K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D Rpic_1805 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Rpic_3542 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Rpic_4286 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Rpic_4353 transcriptional regulator, MerR family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D Rpic_2986 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Rpic_3944 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Rpic_3702 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Rpic_4304 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D Rpic_2460 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D Rpic_0023 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_4483 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_3408 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_4026 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_4858 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Rpic_4428 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Rpic_1111 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Rpic_2510 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Rpic_2109 transcriptional regulator, Crp/Fnr family K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D Rpic_4660 transcriptional regulator, Crp/Fnr family K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D Rpic_0883 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Rpic_3608 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D Rpic_3577 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Rpic_3828 putative transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Rpic_4848 transcriptional regulator, XRE family K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization D Rpic_4864 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D Rpic_0167 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Rpic_0381 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Rpic_3862 proprionate catabolism activator, Fis family K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D Rpic_3170 plasmid maintenance system antidote protein, XRE family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Rpic_2486 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Rpic_0285 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Rpic_4656 transcriptional regulator, NifA subfamily, Fis Family K12266 norR; anaerobic nitric oxide reductase transcription regulator D Rpic_4219 transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein D Rpic_3634 hypothetical protein K07726 K07726; putative transcriptional regulator D Rpic_3496 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Rpic_4060 FMN-binding domain protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D Rpic_2938 protein of unknown function DUF156 K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon D Rpic_1584 protein of unknown function DUF156 K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon D Rpic_1678 protein of unknown function DUF156 K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon D Rpic_0569 protein of unknown function DUF156 K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon D Rpic_3623 hypothetical protein K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression D Rpic_1459 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Rpic_2612 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Rpic_3520 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Rpic_3784 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Rpic_1509 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Rpic_4994 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Rpic_2886 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Rpic_2872 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D Rpic_0621 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Rpic_2749 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein D Rpic_2362 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein D Rpic_4536 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D Rpic_0619 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator D Rpic_3704 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Rpic_4430 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Rpic_0677 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR D Rpic_3098 MraZ protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:rpi03021] D Rpic_3271 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Rpic_3314 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Rpic_3313 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Rpic_2275 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Rpic_2420 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Rpic_1051 RNA polymerase, sigma 70 subunit, RpoD family K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D Rpic_0920 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Rpic_2229 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Rpic_2575 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Rpic_3261 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Rpic_3716 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Rpic_0230 RNA polymerase, sigma 32 subunit, RpoH K03089 rpoH; RNA polymerase sigma-32 factor D Rpic_3770 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Rpic_0263 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Rpic_4070 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Rpic_1116 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Rpic_0660 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Rpic_3319 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG D Rpic_3203 Glutathione S-transferase domain K03599 sspA; stringent starvation protein A D Rpic_3202 Stringent starvation protein B K03600 sspB; stringent starvation protein B D Rpic_0921 anti sigma-E protein, RseA K03597 rseA; sigma-E factor negative regulatory protein RseA D Rpic_0922 putative sigma E regulatory protein, MucB/RseB K03598 rseB; sigma-E factor negative regulatory protein RseB D Rpic_3704 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Rpic_4430 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Rpic_2033 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D Rpic_2273 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D Rpic_1031 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:rpi03019] D Rpic_0905 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Rpic_2395 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D Rpic_0928 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Rpic_1072 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Rpic_3012 guanine-specific ribonuclease N1 and T1 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D Rpic_0813 Exonuclease RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-] D Rpic_0420 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Rpic_2409 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Rpic_3305 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Rpic_0972 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Rpic_2219 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Rpic_1031 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Rpic_2870 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Rpic_3427 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_4400 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_0579 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_4653 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_1064 RNA chaperone Hfq K03666 hfq; host factor-I protein D Rpic_2019 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Rpic_3567 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Rpic_1700 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Rpic_2862 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D Rpic_3062 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Rpic_1229 regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A D Rpic_0258 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ D Rpic_1079 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:rpi03011] D Rpic_0779 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Rpic_1278 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Rpic_3291 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Rpic_3272 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Rpic_3280 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Rpic_1182 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Rpic_3301 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Rpic_3283 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Rpic_0367 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Rpic_3298 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Rpic_3273 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Rpic_3302 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Rpic_3274 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Rpic_3284 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Rpic_2220 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Rpic_0804 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Rpic_3288 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Rpic_1184 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Rpic_3293 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Rpic_2832 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Rpic_3749 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Rpic_3317 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Rpic_3294 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Rpic_3297 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Rpic_3296 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Rpic_3285 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Rpic_3282 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Rpic_1185 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Rpic_3316 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Rpic_3318 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Rpic_3315 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Rpic_0366 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Rpic_3287 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Rpic_3278 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Rpic_3290 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Rpic_3270 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Rpic_3281 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Rpic_0807 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Rpic_1974 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Rpic_3067 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Rpic_3292 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Rpic_3295 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Rpic_3286 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Rpic_3066 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Rpic_2713 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Rpic_3289 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Rpic_3279 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D Rpic_1025 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Rpic_0913 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Rpic_2714 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Rpic_3760 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D Rpic_1975 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Rpic_3275 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D Rpic_0249 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25 D Rpic_R0041 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Rpic_R0051 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Rpic_R0060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Rpic_R0045 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Rpic_R0055 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Rpic_R0064 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Rpic_R0042 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Rpic_R0061 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Rpic_R0052 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:rpi03009] D Rpic_0928 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Rpic_0813 Exonuclease RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-] D Rpic_0929 GTP-binding protein Era K03595 era; GTPase D Rpic_3065 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-] D Rpic_3704 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Rpic_4430 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Rpic_1116 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Rpic_0660 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Rpic_3319 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG D Rpic_0618 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Rpic_0394 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Rpic_2721 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Rpic_3674 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Rpic_0244 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Rpic_3002 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Rpic_3522 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Rpic_3097 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Rpic_3464 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Rpic_0910 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Rpic_1073 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Rpic_2030 ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D Rpic_2393 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Rpic_3698 PUA domain containing protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Rpic_3566 protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D Rpic_2978 putative RNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D Rpic_1056 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Rpic_1053 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Rpic_1114 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Rpic_0906 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D Rpic_1919 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Rpic_1275 RNA-binding S4 domain protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D Rpic_1241 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Rpic_0805 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D Rpic_1911 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D Rpic_3033 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D Rpic_1261 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D Rpic_0990 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D Rpic_0905 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Rpic_2395 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D Rpic_0620 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Rpic_4311 DEAD/DEAH box helicase domain protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D Rpic_0811 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Rpic_1063 small GTP-binding protein K03977 engA; GTPase D Rpic_1065 GTP-binding proten HflX K03665 hflX; GTPase D Rpic_0497 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Rpic_2274 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Rpic_1118 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D Rpic_1115 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP D Rpic_0735 conserved hypothetical protein K14761 rlbA; ribosome-associated protein D Rpic_2392 iojap-like protein K09710 ybeB; ribosome-associated protein D Rpic_0406 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor D Rpic_2031 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein D Rpic_0815 protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein D Rpic_0262 sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor D Rpic_3140 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D Rpic_0912 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:rpi03016] D Rpic_3012 guanine-specific ribonuclease N1 and T1 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D Rpic_3665 polynucleotide adenylyltransferase/metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D Rpic_1022 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Rpic_3061 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Rpic_2726 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Rpic_2983 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Rpic_2594 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Rpic_0737 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Rpic_0137 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Rpic_0893 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Rpic_0341 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Rpic_0744 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Rpic_1977 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Rpic_2551 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Rpic_1008 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Rpic_2441 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Rpic_1060 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Rpic_1973 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Rpic_1972 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Rpic_0372 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Rpic_0985 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Rpic_0373 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Rpic_0849 Threonyl/alanyl tRNA synthetase SAD K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] D Rpic_4702 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Rpic_0653 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D Rpic_2139 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Rpic_1119 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Rpic_0884 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Rpic_2002 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Rpic_0497 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Rpic_2837 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Rpic_3755 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Rpic_3523 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Rpic_3759 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Rpic_R0066 rnpB; Bacterial RNase P K01978 rnpB; M1 RNA D Rpic_2280 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D Rpic_3023 ribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1] D Rpic_1728 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D Rpic_1320 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D Rpic_3159 ABC transporter related K06020 ettA; energy-dependent translational throttle protein EttA D Rpic_0402 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Rpic_0400 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Rpic_2446 TM1410 hypothetical-related protein K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D Rpic_2408 Glutamate--tRNA ligase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Rpic_3157 YbaK/prolyl-tRNA synthetase associated region K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D Rpic_1331 CMP/dCMP deaminase zinc-binding K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Rpic_1174 TIM-barrel protein, yjbN family K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D Rpic_0382 TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Rpic_1912 dihydrouridine synthase DuS K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D Rpic_0408 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Rpic_1002 RNA methyltransferase, TrmH family, group 1 K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D Rpic_0806 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Rpic_0214 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D Rpic_1293 tRNA/rRNA methyltransferase (SpoU) K03437 spoU; RNA methyltransferase, TrmH family D Rpic_2967 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Rpic_0060 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D Rpic_0756 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Rpic_0886 iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein D Rpic_1427 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ D Rpic_1871 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D Rpic_2956 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Rpic_0687 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Rpic_1330 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Rpic_1329 conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Rpic_0324 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Rpic_2817 iron-sulfur cluster binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Rpic_2957 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Rpic_1011 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Rpic_1240 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Rpic_2424 metalloendopeptidase, glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Rpic_2816 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D Rpic_0722 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D Rpic_1072 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Rpic_2219 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:rpi03012] D Rpic_1117 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Rpic_1976 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Rpic_1249 ABC transporter related K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D Rpic_1279 translation elongation factor Ts K02357 tsf; elongation factor Ts D Rpic_3321 translation elongation factor Tu K02358 tuf; elongation factor Tu D Rpic_3299 translation elongation factor Tu K02358 tuf; elongation factor Tu D Rpic_3300 translation elongation factor G K02355 fusA; elongation factor G D Rpic_4484 translation elongation factor G K02355 fusA; elongation factor G D Rpic_3146 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D Rpic_1281 ribosome recycling factor K02838 frr; ribosome recycling factor D Rpic_3148 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Rpic_0248 Aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Rpic_2444 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D Rpic_3276 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D Rpic_0934 translation elongation factor P K02356 efp; elongation factor P D Rpic_0895 conserved hypothetical protein K02836 prfB; peptide chain release factor 2 D Rpic_3761 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D Rpic_3102 Class I peptide chain release factor K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:rpi03110] D Rpic_2733 ATP-dependent Clp protease, ATP-binding subunit clpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D Rpic_1210 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D Rpic_1868 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Rpic_3708 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D Rpic_0851 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Rpic_2870 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Rpic_0889 Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA D Rpic_3447 putative heat shock protein K04046 yegD; hypothetical chaperone protein D Rpic_3427 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_4400 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_0579 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_4653 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_2869 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Rpic_0888 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB D Rpic_0975 Hsp33 protein K04083 hslO; molecular chaperone Hsp33 D Rpic_2874 GrpE protein K03687 GRPE; molecular chaperone GrpE D Rpic_4395 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Rpic_3430 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Rpic_4382 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Rpic_2876 RNA-binding S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D Rpic_3428 chaperonin Cpn10 K04078 groES; chaperonin GroES D Rpic_0578 chaperonin Cpn10 K04078 groES; chaperonin GroES D Rpic_0923 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Rpic_4861 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Rpic_2029 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Rpic_1702 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Rpic_4385 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Rpic_3518 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Rpic_0212 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Rpic_4212 putative lipoprotein signal peptide K06006 cpxP; periplasmic protein CpxP/Spy D Rpic_3713 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A D Rpic_2890 peptidase S8 and S53 subtilisin kexin sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Rpic_2891 peptidase S8 and S53 subtilisin kexin sedolisin K14645 K14645; serine protease [EC:3.4.21.-] D Rpic_1006 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Rpic_1005 peptidyl-prolyl cis-trans isomerase cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D Rpic_1865 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D Rpic_0730 peptidylprolyl isomerase FKBP-type K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D Rpic_1988 Peptidylprolyl isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D Rpic_2711 peptidylprolyl isomerase FKBP-type K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D Rpic_0991 putative FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) protein K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D Rpic_2516 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Rpic_1460 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Rpic_0392 SurA domain K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D Rpic_1032 thioredoxin K03671 TXN; thioredoxin D Rpic_4601 Thioredoxin domain K03671 TXN; thioredoxin D Rpic_0723 Thioredoxin domain K03671 TXN; thioredoxin D Rpic_0726 thioredoxin K05838 ybbN; putative thioredoxin D Rpic_0211 glutaredoxin 3 K03676 grxC; glutaredoxin 3 D Rpic_3150 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D Rpic_0135 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Rpic_1246 Disulphide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D Rpic_3134 putative thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D Rpic_3268 Protein-disulfide reductase K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D Rpic_2853 periplasmic protein thiol/disulphide oxidoreductase DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE D Rpic_2528 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE D Rpic_4610 disulfide isomerase/thiol-disulfide oxidase K03805 dsbG; thiol:disulfide interchange protein DsbG C 04131 Membrane trafficking [BR:rpi04131] D Rpic_1055 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Rpic_2251 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D Rpic_2988 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Rpic_0209 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Rpic_0492 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Rpic_3482 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Rpic_0851 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:rpi04121] C 03051 Proteasome [BR:rpi03051] D Rpic_0851 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:rpi03032] D Rpic_2041 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Rpic_2793 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Rpic_3555 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Rpic_1866 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Rpic_1971 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Rpic_0780 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Rpic_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Rpic_1186 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Rpic_2325 DnaB domain protein helicase domain protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Rpic_2421 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Rpic_0277 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_1550 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_5019 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_2403 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Rpic_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Rpic_2678 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Rpic_2981 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Rpic_1424 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Rpic_0467 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Rpic_2073 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Rpic_1035 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Rpic_1292 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Rpic_2435 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Rpic_1272 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Rpic_2860 conserved hypothetical protein K10763 hda; DnaA-homolog protein D Rpic_0771 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Rpic_0003 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Rpic_0831 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Rpic_0829 DNA topoisomerase (ATP-hydrolyzing) K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Rpic_3748 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Rpic_3683 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:rpi03036] D Rpic_0928 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Rpic_4238 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Rpic_4798 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Rpic_1142 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Rpic_1730 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Rpic_4294 conserved hypothetical protein K03746 hns; DNA-binding protein H-NS D Rpic_2793 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Rpic_3555 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Rpic_1866 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Rpic_1971 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Rpic_0780 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Rpic_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Rpic_2923 Ferritin Dps family protein K04047 dps; starvation-inducible DNA-binding protein D Rpic_0381 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Rpic_1064 RNA chaperone Hfq K03666 hfq; host factor-I protein D Rpic_2012 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Rpic_4296 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Rpic_0797 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Rpic_3387 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Rpic_3548 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Rpic_4298 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Rpic_0711 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Rpic_1270 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D Rpic_2599 chromosome segregation and condensation protein ScpA K05896 scpA; segregation and condensation protein A D Rpic_1113 segregation and condensation protein B K06024 scpB; segregation and condensation protein B D Rpic_3085 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Rpic_0973 Septum formation initiator K05589 ftsB; cell division protein FtsB D Rpic_3095 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Rpic_4444 cell divisionFtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Rpic_2556 cell divisionFtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Rpic_3096 cell division protein FtsL K03586 ftsL; cell division protein FtsL D Rpic_3086 Polypeptide-transport-associated domain protein FtsQ-type K03589 ftsQ; cell division protein FtsQ D Rpic_3090 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Rpic_3084 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Rpic_2669 protein of unknown function DUF710 K09888 zapA; cell division protein ZapA D Rpic_3074 protein of unknown function DUF1342 K18778 zapD; cell division protein ZapD D Rpic_1100 AFG1-family ATPase K06916 zapE; cell division protein ZapE D Rpic_2815 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Rpic_3745 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Rpic_3561 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Rpic_3562 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Rpic_3563 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Rpic_3719 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator D Rpic_3690 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Rpic_3689 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D Rpic_3688 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D Rpic_3686 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D Rpic_4960 conserved hypothetical protein K03496 parA; chromosome partitioning protein D Rpic_2621 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Rpic_2655 putative partition-related protein K03496 parA; chromosome partitioning protein D Rpic_3783 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Rpic_1508 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Rpic_3521 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Rpic_2612 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Rpic_3520 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Rpic_3784 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Rpic_1509 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Rpic_4994 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Rpic_0831 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Rpic_0829 DNA topoisomerase (ATP-hydrolyzing) K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Rpic_3523 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Rpic_3522 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Rpic_3697 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D Rpic_4952 integrase family protein K03733 xerC; integrase/recombinase XerC D Rpic_2821 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D Rpic_1729 integrase family protein K04763 xerD; integrase/recombinase XerD D Rpic_1733 integrase family protein K04763 xerD; integrase/recombinase XerD D Rpic_4335 integrase family protein K04763 xerD; integrase/recombinase XerD D Rpic_2592 protein of unknown function DUF59 K03593 mrp; ATP-binding protein involved in chromosome partitioning D Rpic_3266 GTP-binding protein HSR1-related K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:rpi03400] D Rpic_2774 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Rpic_2820 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Rpic_0617 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Rpic_3129 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Rpic_0256 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Rpic_0871 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Rpic_3076 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Rpic_2732 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Rpic_2856 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Rpic_2840 2OG-Fe(II) oxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] D Rpic_1242 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Rpic_2841 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Rpic_1009 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Rpic_2773 transcriptional regulator, AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Rpic_4549 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Rpic_0254 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Rpic_0042 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Rpic_1952 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Rpic_0958 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Rpic_1272 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Rpic_2435 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Rpic_4441 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Rpic_0275 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Rpic_0876 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Rpic_0936 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D Rpic_2440 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Rpic_4129 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Rpic_3314 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Rpic_3313 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Rpic_3271 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Rpic_2275 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Rpic_1904 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Rpic_0993 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Rpic_2836 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Rpic_3405 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D Rpic_2804 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Rpic_2428 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Rpic_2403 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Rpic_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Rpic_2678 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Rpic_2981 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Rpic_1424 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Rpic_0467 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Rpic_2073 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Rpic_1035 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Rpic_0277 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_1550 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_5019 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_0471 recA protein K03553 recA; recombination protein RecA D Rpic_0377 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Rpic_0376 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Rpic_0379 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Rpic_2324 endodeoxyribonuclease RusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] D Rpic_3497 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Rpic_1183 conserved hypothetical protein K02686 priB; primosomal replication protein N D Rpic_1637 putative ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50 D Rpic_1635 DNA repair exonuclease-like protein K03547 sbcD; DNA repair protein SbcD/Mre11 D Rpic_1245 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D Rpic_2955 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Rpic_0930 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Rpic_1038 recombination protein RecR K06187 recR; recombination protein RecR D Rpic_2888 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Rpic_4103 putative exonuclease RdgC K03554 rdgC; recombination associated protein RdgC D Rpic_3829 putative exonuclease RdgC K03554 rdgC; recombination associated protein RdgC D Rpic_1034 UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Rpic_1033 conserved hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Rpic_2387 protein of unknown function DUF853 NPT hydrolase putative K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D Rpic_0502 Ku protein K10979 ku; DNA end-binding protein Ku D Rpic_0501 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D Rpic_0771 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Rpic_0003 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Rpic_3748 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Rpic_2793 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Rpic_3555 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Rpic_1866 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Rpic_0381 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Rpic_1971 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Rpic_0780 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Rpic_3305 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Rpic_4238 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Rpic_4798 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Rpic_1142 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Rpic_1730 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Rpic_4294 conserved hypothetical protein K03746 hns; DNA-binding protein H-NS D Rpic_1963 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Rpic_4974 peptidase S24 and S26 domain protein K01356 lexA; repressor LexA [EC:3.4.21.88] D Rpic_1179 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88] D Rpic_4490 conserved hypothetical protein K14160 imuA; protein ImuA D Rpic_4489 conserved hypothetical protein K14161 imuB; protein ImuB D Rpic_4488 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D Rpic_0472 regulatory protein RecX K03565 recX; regulatory protein D Rpic_4410 PHP domain protein K02347 polX; DNA polymerase (family X) D Rpic_3485 UvrD/REP helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D Rpic_1921 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Rpic_4403 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Rpic_3047 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Rpic_3046 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:rpi03029] D Rpic_3205 Cytochrome b/b6 domain K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Rpic_1117 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Rpic_1976 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Rpic_1279 translation elongation factor Ts K02357 tsf; elongation factor Ts D Rpic_3321 translation elongation factor Tu K02358 tuf; elongation factor Tu D Rpic_3299 translation elongation factor Tu K02358 tuf; elongation factor Tu D Rpic_3300 translation elongation factor G K02355 fusA; elongation factor G D Rpic_4484 translation elongation factor G K02355 fusA; elongation factor G D Rpic_0929 GTP-binding protein Era K03595 era; GTPase D Rpic_0372 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Rpic_2983 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Rpic_0341 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Rpic_0137 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Rpic_0511 Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Rpic_3692 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Rpic_3695 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Rpic_3691 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Rpic_1560 DNA/RNA non-specific endonuclease K01173 ENDOG; endonuclease G, mitochondrial D Rpic_0277 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_1550 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_5019 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Rpic_1286 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D Rpic_2870 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Rpic_2874 GrpE protein K03687 GRPE; molecular chaperone GrpE D Rpic_3427 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_4400 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_0579 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_4653 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_3428 chaperonin Cpn10 K04078 groES; chaperonin GroES D Rpic_0578 chaperonin Cpn10 K04078 groES; chaperonin GroES D Rpic_2869 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Rpic_0884 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Rpic_2002 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Rpic_0888 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB D Rpic_3150 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D Rpic_2592 protein of unknown function DUF59 K03593 mrp; ATP-binding protein involved in chromosome partitioning D Rpic_0228 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Rpic_0221 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D Rpic_0227 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Rpic_3757 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Rpic_0225 putative transmembrane cytochrome oxidase complex biogenesis factor transmembrane protein K14998 SURF1; surfeit locus 1 family protein D Rpic_4017 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D Rpic_0229 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D Rpic_0851 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:rpi02000] D Rpic_2397 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Rpic_0354 ABC transporter related K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D Rpic_0836 ABC transporter related K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D Rpic_3967 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Rpic_4878 response regulator receiver protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Rpic_0331 ABC transporter domain protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein D Rpic_0828 ABC transporter related K15738 uup; ABC transport system ATP-binding/permease protein D Rpic_1211 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D Rpic_1221 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Rpic_1222 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Rpic_1223 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Rpic_3851 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Rpic_0544 extracellular solute-binding protein family 1 K02020 modA; molybdate transport system substrate-binding protein D Rpic_4222 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Rpic_4221 ABC transporter related K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Rpic_2244 extracellular solute-binding protein family 1 K05772 tupA; tungstate transport system substrate-binding protein D Rpic_2866 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein D Rpic_2867 ABC transporter related K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Rpic_0237 putative nitrate transporter protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D Rpic_0236 nitrate ABC transporter, inner membrane subunit K15577 nrtB; nitrate/nitrite transport system permease protein D Rpic_0235 nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D Rpic_2885 taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein D Rpic_2883 binding-protein-dependent transport systems inner membrane component K15552 tauC; taurine transport system permease protein D Rpic_2884 ABC transporter related K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D Rpic_4455 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_4089 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_1213 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_1214 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_3602 conserved hypothetical signal peptide protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_1042 NMT1/THI5 like domain protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_4038 NMT1/THI5 like domain protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_4459 NMT1/THI5 like domain protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_4009 putative periplasmic substrate-binding transmembrane protein K15553 ssuA; sulfonate transport system substrate-binding protein D Rpic_1216 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_4458 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_4010 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_4037 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_1044 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Rpic_1217 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_4011 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_4036 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_4457 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_1043 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Rpic_3211 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Rpic_3214 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Rpic_4473 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component K02012 afuA; iron(III) transport system substrate-binding protein D Rpic_3215 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Rpic_4475 2-aminoethylphosphonate ABC transport system, permease protein K02011 afuB; iron(III) transport system permease protein D Rpic_4476 2-aminoethylphosphonate ABC transport system, ATP-binding protein component K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Rpic_3216 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Rpic_1468 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Rpic_1418 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Rpic_1470 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Rpic_1416 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Rpic_1417 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Rpic_1469 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Rpic_1467 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Rpic_1415 ABC transporter related K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Rpic_2784 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein D Rpic_3569 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Rpic_4538 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Rpic_3570 ABC transporter related K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Rpic_4537 ABC transporter related K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Rpic_2997 Monosaccharide-transporting ATPase K10537 araF; L-arabinose transport system substrate-binding protein D Rpic_3008 Monosaccharide-transporting ATPase K10537 araF; L-arabinose transport system substrate-binding protein D Rpic_2995 Monosaccharide-transporting ATPase K10538 araH; L-arabinose transport system permease protein D Rpic_3010 Monosaccharide-transporting ATPase K10538 araH; L-arabinose transport system permease protein D Rpic_2996 ABC transporter related K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D Rpic_3009 ABC transporter related K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D Rpic_4074 D-xylose ABC transporter, periplasmic substrate-binding protein K10543 xylF; D-xylose transport system substrate-binding protein D Rpic_4913 D-xylose ABC transporter, periplasmic substrate-binding protein K10543 xylF; D-xylose transport system substrate-binding protein D Rpic_4076 Monosaccharide-transporting ATPase K10544 xylH; D-xylose transport system permease protein D Rpic_4915 Monosaccharide-transporting ATPase K10544 xylH; D-xylose transport system permease protein D Rpic_4075 D-xylose ABC transporter, ATPase subunit K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D Rpic_4914 D-xylose ABC transporter, ATPase subunit K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D Rpic_0882 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein D Rpic_0880 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein D Rpic_0881 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Rpic_4095 periplasmic binding protein/LacI transcriptional regulator K23508 ytfQ; galactofuranose transport system substrate-binding protein D Rpic_4098 Monosaccharide-transporting ATPase K23509 ytfT; galactofuranose transport system permease protein D Rpic_4097 Monosaccharide-transporting ATPase K23509 ytfT; galactofuranose transport system permease protein D Rpic_4096 ABC transporter related K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D Rpic_3333 conserved hypothetical signal peptide protein K17321 glpV; glycerol transport system substrate-binding protein D Rpic_3330 binding-protein-dependent transport systems inner membrane component K17322 glpP; glycerol transport system permease protein D Rpic_3331 binding-protein-dependent transport systems inner membrane component K17323 glpQ; glycerol transport system permease protein D Rpic_3328 ABC transporter related K17324 glpS; glycerol transport system ATP-binding protein D Rpic_3329 ABC transporter related K17325 glpT; glycerol transport system ATP-binding protein D Rpic_1092 extracellular solute-binding protein family 1 K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D Rpic_1093 binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D Rpic_1094 binding-protein-dependent transport systems inner membrane component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D Rpic_1095 ABC transporter related K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D Rpic_2379 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Rpic_2377 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D Rpic_2378 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D Rpic_2376 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein D Rpic_0698 conserved hypothetical protein K02069 STAR2; UDP-glucose/iron transport system permease protein D Rpic_0699 ABC transporter related K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D Rpic_3238 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Rpic_0170 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Rpic_3239 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Rpic_0168 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Rpic_3240 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Rpic_0169 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Rpic_0171 putative lipoprotein K18480 linN; cholesterol transport system auxiliary component D Rpic_3236 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Rpic_3235 putative signal peptide protein K07122 mlaB; phospholipid transport system transporter-binding protein D Rpic_4936 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Rpic_3505 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D Rpic_2026 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D Rpic_2025 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D Rpic_2024 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Rpic_2023 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Rpic_0357 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Rpic_1475 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Rpic_3666 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Rpic_2466 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Rpic_0359 polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein D Rpic_0358 polar amino acid ABC transporter, inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein D Rpic_0360 ABC transporter related K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D Rpic_3495 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_3525 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2221 putative transporter signal peptide protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_0515 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2449 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_3537 putative substrate-binding periplasmic (PBP) ABC transporter protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_3793 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2692 putative amino acid-binding periplasmic (PBP) ABC transporter protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2709 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_4908 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_1454 putative Leu/Ile/Val-binding precursor signal peptide protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_0158 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2414 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_4699 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Rpic_2453 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_3536 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_4526 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_3794 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_2708 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_4907 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_1453 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Rpic_4525 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_1452 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_2452 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_2707 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_3535 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_3795 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_4906 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Rpic_2451 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_3539 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_3796 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_2706 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_4905 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_1451 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein D Rpic_1450 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_2450 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_2705 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_3538 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_3797 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_4524 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_4904 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein D Rpic_0792 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Rpic_3593 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Rpic_0791 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Rpic_0790 ABC transporter related K02071 metN; D-methionine transport system ATP-binding protein D Rpic_2193 urea ABC transporter, urea binding protein K11959 urtA; urea transport system substrate-binding protein D Rpic_2192 urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein D Rpic_2191 urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein D Rpic_2190 urea ABC transporter, ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein D Rpic_2189 urea ABC transporter, ATP-binding protein UrtE K11963 urtE; urea transport system ATP-binding protein D Rpic_1461 protein of unknown function DUF534 K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D Rpic_1462 inner-membrane translocator K05832 K05832; putative tryptophan/tyrosine transport system permease protein D Rpic_1463 ABC transporter related K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D Rpic_3925 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Rpic_2798 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Rpic_0017 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Rpic_2462 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Rpic_0854 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Rpic_2484 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Rpic_3923 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Rpic_3924 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Rpic_0019 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Rpic_0018 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Rpic_2464 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Rpic_2463 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Rpic_2797 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Rpic_0020 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Rpic_2465 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Rpic_2796 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Rpic_1253 extracellular solute-binding protein family 5 K13889 gsiB; glutathione transport system substrate-binding protein D Rpic_1254 binding-protein-dependent transport systems inner membrane component K13890 gsiC; glutathione transport system permease protein D Rpic_1255 binding-protein-dependent transport systems inner membrane component K13891 gsiD; glutathione transport system permease protein D Rpic_1252 oligopeptide/dipeptide ABC transporter, ATPase subunit K13892 gsiA; glutathione transport system ATP-binding protein D Rpic_2161 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Rpic_3706 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Rpic_2087 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Rpic_2083 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Rpic_2084 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Rpic_2085 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Rpic_2086 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Rpic_1014 extracellular solute-binding protein family 5 K13893 yejA; microcin C transport system substrate-binding protein D Rpic_1015 binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein D Rpic_1016 binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein D Rpic_1017 ABC transporter related K13896 yejF; microcin C transport system ATP-binding protein D Rpic_2660 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Rpic_2666 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Rpic_2665 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Rpic_1151 ABC-2 type transporter K09688 kpsM; capsular polysaccharide transport system permease protein D Rpic_1150 WcbD K10107 kpsE; capsular polysaccharide transport system permease protein D Rpic_1152 ABC transporter related K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D Rpic_2680 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Rpic_2681 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Rpic_0264 ABC transporter related K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Rpic_2129 ABC-2 type transporter, NodJ family K09694 nodJ; lipooligosaccharide transport system permease protein D Rpic_2128 nodulation ABC transporter NodI K09695 nodI; lipooligosaccharide transport system ATP-binding protein D Rpic_4063 putative NosY transmembrane protein K19341 nosY; Cu-processing system permease protein D Rpic_4062 ABC transporter related K19340 nosF; Cu-processing system ATP-binding protein D Rpic_0960 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Rpic_1691 protein of unknown function DUF214 K09808 lolC_E; lipoprotein-releasing system permease protein D Rpic_0961 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Rpic_2850 hypothetical protein K02196 ccmD; heme exporter protein D D Rpic_2849 heme exporter protein CcmC K02195 ccmC; heme exporter protein C D Rpic_2848 heme exporter protein CcmB K02194 ccmB; heme exporter protein B D Rpic_2847 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Rpic_3233 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Rpic_0057 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Rpic_3234 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Rpic_0056 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Rpic_4368 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Rpic_2242 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Rpic_4425 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Rpic_1663 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Rpic_4369 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Rpic_4424 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Rpic_1862 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Rpic_1662 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Rpic_2813 Bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D Rpic_1023 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Rpic_4849 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Rpic_4169 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Rpic_0543 metabolite/H+ symporter, major facilitator superfamily (MFS) K03288 citA; MFS transporter, MHS family, citrate/tricarballylate:H+ symporter D Rpic_3787 General substrate transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D Rpic_3844 metabolite/H+ symporter, major facilitator superfamily (MFS) K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D Rpic_4450 d-galactonate transporter K03535 gudP; MFS transporter, ACS family, glucarate transporter D Rpic_0947 major facilitator superfamily MFS_1 K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D Rpic_4445 major facilitator superfamily MFS_1 K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D Rpic_3986 major facilitator superfamily MFS_1 K13021 ttuB; MFS transporter, ACS family, tartrate transporter D Rpic_3987 major facilitator superfamily MFS_1 K13021 ttuB; MFS transporter, ACS family, tartrate transporter D Rpic_4020 major facilitator superfamily MFS_1 K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter D Rpic_1368 major facilitator superfamily MFS_1 K05548 benK; MFS transporter, AAHS family, benzoate transport protein D Rpic_2637 major facilitator superfamily MFS_1 K05548 benK; MFS transporter, AAHS family, benzoate transport protein D Rpic_4548 major facilitator superfamily MFS_1 K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D Rpic_2515 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Rpic_4666 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Rpic_4667 nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Rpic_4163 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Rpic_1243 major facilitator superfamily MFS_1 K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter D Rpic_0047 major facilitator superfamily MFS_1 K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Rpic_4301 major facilitator superfamily MFS_1 K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Rpic_2375 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Rpic_0173 major facilitator superfamily MFS_1 K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein D Rpic_2696 major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D Rpic_3614 major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D Rpic_1122 drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D Rpic_3819 major facilitator superfamily MFS_1 K08166 mmr; MFS transporter, DHA2 family, methylenomycin A resistance protein D Rpic_4717 major facilitator superfamily MFS_1 K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D Rpic_3349 major facilitator superfamily MFS_1 K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D Rpic_2063 major facilitator superfamily MFS_1 K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D Rpic_4498 major facilitator superfamily MFS_1 K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D Rpic_0204 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Rpic_0203 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Rpic_3108 phosphoenolpyruvate-protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D Rpic_3110 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Rpic_3879 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component D Rpic_0202 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Rpic_0261 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D Rpic_0326 K channel inward rectifier conserved region 2 domain protein K08715 IRPC; inward rectifier potassium channel D Rpic_0199 ammonium transporter K03320 amt; ammonium transporter, Amt family D Rpic_0087 Rh family protein/ammonium transporter K03320 amt; ammonium transporter, Amt family D Rpic_3350 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_2965 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_1139 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_2167 putative GST-related protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_0845 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_0537 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_3504 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_3664 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_4827 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Rpic_3203 Glutathione S-transferase domain K03599 sspA; stringent starvation protein A D Rpic_1054 protein of unknown function UPF0005 K19416 yccA; modulator of FtsH protease D Rpic_3207 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D Rpic_2898 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Rpic_3348 MscS Mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel D Rpic_4045 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D Rpic_4046 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Rpic_2805 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Rpic_2117 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Rpic_2118 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Rpic_2806 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Rpic_0681 protein TolQ K03562 tolQ; biopolymer transport protein TolQ D Rpic_0682 protein TolR K03560 tolR; biopolymer transport protein TolR D Rpic_3019 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D Rpic_4550 Mg2 transporter protein CorA family protein K03284 corA; magnesium transporter D Rpic_1208 CrcB protein K06199 crcB; fluoride exporter D Rpic_0021 protein of unknown function UPF0187 K08994 yneE; ion channel-forming bestrophin family protein D Rpic_1784 Mercuric transport protein MerT K08363 merT; mercuric ion transport protein D Rpic_1785 mercuric transport protein periplasmic component K08364 merP; periplasmic mercuric ion binding protein D Rpic_1786 MerC mercury resistance protein K19058 merC; mercuric ion transport protein D Rpic_3069 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Rpic_2476 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Rpic_1039 Carbohydrate-selective porin OprB K16080 mnoP; high affinity Mn2+ porin D Rpic_2951 Carbohydrate-selective porin OprB K16080 mnoP; high affinity Mn2+ porin D Rpic_3166 Carbohydrate-selective porin OprB K16080 mnoP; high affinity Mn2+ porin D Rpic_1590 Carbohydrate-selective porin OprB K16080 mnoP; high affinity Mn2+ porin D Rpic_4992 Carbohydrate-selective porin OprB K16080 mnoP; high affinity Mn2+ porin D Rpic_1665 Carbohydrate-selective porin OprB K16080 mnoP; high affinity Mn2+ porin D Rpic_0770 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Rpic_4639 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein D Rpic_3811 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein D Rpic_0763 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein D Rpic_0101 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor D Rpic_3802 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor D Rpic_4266 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor D Rpic_2667 TonB-dependent receptor K16092 btuB; vitamin B12 transporter D Rpic_4136 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Rpic_0747 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Rpic_1764 outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system D Rpic_4684 outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system D Rpic_1648 outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system D Rpic_4285 outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system D Rpic_4374 conserved hypothetical protein K15725 czcC; outer membrane protein, heavy metal efflux system D Rpic_0645 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Rpic_4223 RND efflux system, outer membrane lipoprotein, NodT family K18903 oprC; outer membrane protein, multidrug efflux system D Rpic_4898 RND efflux system, outer membrane lipoprotein, NodT family K18903 oprC; outer membrane protein, multidrug efflux system D Rpic_3747 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Rpic_4545 RND efflux system, outer membrane lipoprotein, NodT family K18904 nodT; outer membrane protein, multidrug efflux system D Rpic_1161 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Rpic_4912 Carbohydrate-selective porin OprB K07267 oprB; porin D Rpic_1286 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D Rpic_1062 outer membrane assembly lipoprotein YfgL K17713 bamB; outer membrane protein assembly factor BamB D Rpic_0988 NlpBDapX family lipoprotein K07287 bamC; outer membrane protein assembly factor BamC D Rpic_1920 outer membrane assembly lipoprotein YfiO K05807 bamD; outer membrane protein assembly factor BamD D Rpic_2985 SmpA/OmlA domain protein K06186 bamE; outer membrane protein assembly factor BamE D Rpic_2597 surface antigen (D15) K07278 tamA; translocation and assembly module TamA D Rpic_2596 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB D Rpic_0265 lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA D Rpic_0266 protein of unknown function DUF1239 K11719 lptC; lipopolysaccharide export system protein LptC D Rpic_0391 Organic solvent tolerance protein K04744 lptD; LPS-assembly protein D Rpic_2982 Rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein D Rpic_0404 CBS domain containing protein K06189 corC; hemolysin (HlyC) family protein D Rpic_2905 LrgA family protein K06518 cidA; holin-like protein D Rpic_1448 amino acid permease-associated region K11733 lysP; lysine-specific permease D Rpic_1449 amino acid permease-associated region K11733 lysP; lysine-specific permease D Rpic_0834 amino acid permease-associated region K16234 hutT; histidine transporter D Rpic_1761 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D Rpic_2432 zinc/iron permease K16267 zipB; zinc and cadmium transporter D Rpic_1762 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Rpic_4682 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Rpic_4283 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Rpic_4375 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Rpic_1672 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Rpic_2944 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Rpic_4985 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Rpic_1809 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein D Rpic_1646 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein D Rpic_4224 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18902 bpeF; multidrug efflux pump D Rpic_1892 acriflavin resistance protein K18303 mexK; multidrug efflux pump D Rpic_0842 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18095 mexY; multidrug efflux pump D Rpic_3746 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Rpic_4183 acriflavin resistance protein K07788 mdtB; multidrug efflux pump D Rpic_4182 acriflavin resistance protein K07789 mdtC; multidrug efflux pump D Rpic_3459 protein of unknown function DUF6 transmembrane K15268 eamA; O-acetylserine/cysteine efflux transporter D Rpic_3044 protein of unknown function DUF6 transmembrane K11939 rhtA; inner membrane transporter RhtA D Rpic_0490 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD D Rpic_4131 protein of unknown function UPF0060 K09771 TC.SMR3; small multidrug resistance family-3 protein D Rpic_4193 gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family D Rpic_0837 L-lactate transport K03303 lutP; lactate permease D Rpic_3898 sodium/calcium exchanger membrane region K07300 chaA; Ca2+:H+ antiporter D Rpic_1664 sodium/calcium exchanger membrane region K07301 yrbG; cation:H+ antiporter D Rpic_2952 sodium/calcium exchanger membrane region K07301 yrbG; cation:H+ antiporter D Rpic_2098 SSS sodium solute transporter superfamily K14393 actP; cation/acetate symporter D Rpic_0465 SSS sodium solute transporter superfamily K14393 actP; cation/acetate symporter D Rpic_3473 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein D Rpic_0186 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein D Rpic_4268 sodium/hydrogen exchanger K03316 nhaP; Na+:H+ antiporter D Rpic_3379 potassium efflux system protein K11745 kefC; glutathione-regulated potassium-efflux system protein KefC D Rpic_3380 NAD(P)H dehydrogenase (quinone) K11746 kefF; glutathione-regulated potassium-efflux system ancillary protein KefF D Rpic_0269 sodium/hydrogen exchanger K03455 KEA1_2_3; K+:H+ antiporter D Rpic_4030 sodium/hydrogen exchanger K26735 KEA4_5_6; K+:H+ antiporter D Rpic_2258 xanthine permease K24206 uacT; uric acid transporter D Rpic_3780 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Rpic_0705 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Rpic_1369 benzoate transporter K05782 benE; benzoate membrane transport protein D Rpic_3801 Chloride channel core K03281 clcA; chloride channel protein, CIC family D Rpic_2699 Chloride channel core K03281 clcA; chloride channel protein, CIC family D Rpic_3866 Chloride channel core K03281 clcA; chloride channel protein, CIC family D Rpic_3981 Chloride channel core K03281 clcA; chloride channel protein, CIC family D Rpic_4310 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter D Rpic_0832 Chromate transporter K07240 chrA; chromate transporter D Rpic_0833 Chromate transporter K07240 chrA; chromate transporter D Rpic_3574 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter D Rpic_4615 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter D Rpic_3995 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Rpic_3825 arsenical-resistance protein K03325 ACR3; arsenite transporter D Rpic_2833 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Rpic_4277 K potassium transporter K03549 kup; KUP system potassium uptake protein D Rpic_1926 K potassium transporter K03549 kup; KUP system potassium uptake protein D Rpic_2011 Lysine exporter protein (LYSE/YGGA) K06895 lysE; L-lysine exporter family protein LysE/ArgO D Rpic_0193 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein D Rpic_0080 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein D Rpic_2035 Lysine exporter protein (LYSE/YGGA) K11250 leuE; leucine efflux protein D Rpic_0488 AzlC family protein K26605 azlC; branched chain amino acid efflux pump D Rpic_0389 AzlC family protein K26605 azlC; branched chain amino acid efflux pump D Rpic_0388 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump D Rpic_0489 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump D Rpic_0740 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Rpic_0741 protein of unknown function DUF1468 K07794 tctB; putative tricarboxylic transport membrane protein D Rpic_0375 conserved hypothetical integral membrane protein K09125 yhhQ; queuosine precursor transporter D Rpic_3226 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein D Rpic_3090 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Rpic_2251 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D Rpic_1817 iron permease FTR1 K07243 FTR; high-affinity iron transporter D Rpic_1641 iron permease FTR1 K07243 FTR; high-affinity iron transporter D Rpic_3022 TonB family protein K03832 tonB; periplasmic protein TonB D Rpic_2116 TonB family protein K03832 tonB; periplasmic protein TonB D Rpic_0685 peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D Rpic_0683 protein TolA K03646 tolA; colicin import membrane protein D Rpic_0684 Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein D Rpic_4939 malonate decarboxylase, alpha subunit K13929 mdcA; malonate decarboxylase alpha subunit [EC:2.3.1.187] D Rpic_4941 malonate decarboxylase acyl carrier protein K13931 mdcC; malonate decarboxylase delta subunit D Rpic_2520 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Rpic_4669 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Rpic_2519 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Rpic_4670 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Rpic_2517 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Rpic_4672 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Rpic_1123 secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system D Rpic_4986 efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D Rpic_1763 Membrane Fusion Protein cluster 2 protein K15727 czcB; membrane fusion protein, heavy metal efflux system D Rpic_4683 efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D Rpic_2945 efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D Rpic_1671 efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D Rpic_4376 efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D Rpic_1808 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Rpic_1647 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Rpic_4284 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Rpic_4225 efflux transporter, RND family, MFP subunit K18901 bpeE; membrane fusion protein, multidrug efflux system D Rpic_4897 efflux transporter, RND family, MFP subunit K18901 bpeE; membrane fusion protein, multidrug efflux system D Rpic_0841 efflux transporter, RND family, MFP subunit K18094 mexX; membrane fusion protein, multidrug efflux system D Rpic_3745 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Rpic_4184 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D Rpic_3949 FeoA family protein K04758 feoA; ferrous iron transport protein A D Rpic_3948 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D Rpic_0143 Entericidin EcnAB K16348 ecnB; entericidin B D Rpic_2852 cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D Rpic_1768 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D Rpic_1346 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D Rpic_2256 hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D Rpic_1722 copper resistance D domain protein K07245 pcoD; copper resistance protein D D Rpic_4608 copper resistance D domain protein K07245 pcoD; copper resistance protein D D Rpic_1776 copper resistance D domain protein K07245 pcoD; copper resistance protein D D Rpic_1837 copper resistance D domain protein K07245 pcoD; copper resistance protein D D Rpic_1838 copper resistance protein CopC K07156 copC; copper resistance protein C D Rpic_1721 copper resistance protein CopC K07156 copC; copper resistance protein C D Rpic_4607 copper resistance protein CopC K07156 copC; copper resistance protein C D Rpic_1777 copper resistance protein CopC K07156 copC; copper resistance protein C D Rpic_1716 copper resistance protein CopC K07156 copC; copper resistance protein C D Rpic_2482 MltA-interacting MipA family protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:rpi02044] D Rpic_0645 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Rpic_3390 putative general secretion pathway related transmembrane protein K02452 gspC; general secretion pathway protein C D Rpic_3399 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D Rpic_3400 general secretory pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Rpic_3401 general secretion pathway protein F K02455 gspF; general secretion pathway protein F D Rpic_3391 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D Rpic_3392 general secretion pathway protein H K02457 gspH; general secretion pathway protein H D Rpic_3393 general secretion pathway protein I K02458 gspI; general secretion pathway protein I D Rpic_3394 putative general secretory pathway J transmembrane protein K02459 gspJ; general secretion pathway protein J D Rpic_3395 General secretion pathway protein K K02460 gspK; general secretion pathway protein K D Rpic_3396 General secretion pathway L K02461 gspL; general secretion pathway protein L D Rpic_3397 General secretion pathway M protein K02462 gspM; general secretion pathway protein M D Rpic_3398 putative general secretory pathway N transmembrane protein K02463 gspN; general secretion pathway protein N D Rpic_3072 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Rpic_0478 type 4 fimbrial pilin signal peptide protein K02650 pilA; type IV pilus assembly protein PilA D Rpic_0477 putative type 4 fimbrial pilin signal peptide protein K02650 pilA; type IV pilus assembly protein PilA D Rpic_0480 pilin subfamily protein K02650 pilA; type IV pilus assembly protein PilA D Rpic_3070 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D Rpic_3071 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Rpic_0666 putative type-4 frimbrial pilin-related signal peptide protein K02655 pilE; type IV pilus assembly protein PilE D Rpic_0676 type IV pilin K02655 pilE; type IV pilus assembly protein PilE D Rpic_2916 putative type 4 fimbrial biogenesis transmembrane protein K02655 pilE; type IV pilus assembly protein PilE D Rpic_1057 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D Rpic_0612 response regulator receiver protein K02657 pilG; twitching motility two-component system response regulator PilG D Rpic_0613 response regulator receiver protein K02658 pilH; twitching motility two-component system response regulator PilH D Rpic_0614 CheW protein K02659 pilI; twitching motility protein PilI D Rpic_0615 methyl-accepting chemotaxis sensory transducer K02660 pilJ; twitching motility protein PilJ D Rpic_3253 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Rpic_3252 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Rpic_3251 Pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO D Rpic_3250 Pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP D Rpic_3249 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ D Rpic_2918 twitching motility protein K02669 pilT; twitching motility protein PilT D Rpic_2917 twitching motility protein K02670 pilU; twitching motility protein PilU D Rpic_0671 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D Rpic_2914 putative type 4 fimbrial biogenesis related transmembrane protein K02671 pilV; type IV pilus assembly protein PilV D Rpic_0668 putative transmembrane protein K02672 pilW; type IV pilus assembly protein PilW D Rpic_0672 type IV pilus assembly protein PilW K02672 pilW; type IV pilus assembly protein PilW D Rpic_2913 putative type 4 fimbrial biogenesis PilW-related protein transmembrane K02672 pilW; type IV pilus assembly protein PilW D Rpic_0673 conserved hypothetical protein K02673 pilX; type IV pilus assembly protein PilX D Rpic_2911 putative type 4 fimbrial biogenesis PilY1-related protein signal peptide K02674 pilY1; type IV pilus assembly protein PilY1 D Rpic_0674 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein K02674 pilY1; type IV pilus assembly protein PilY1 D Rpic_1423 type IV pilus assembly PilZ K02676 pilZ; type IV pilus assembly protein PilZ D Rpic_0665 putative type 4 fimbrial pilin related transmembrane protein K08084 fimT; type IV fimbrial biogenesis protein FimT D Rpic_0670 Tfp pilus assembly protein FimT-like protein K08084 fimT; type IV fimbrial biogenesis protein FimT D Rpic_2915 putative type 4 fimbrial pilin related transmembrane protein K08084 fimT; type IV fimbrial biogenesis protein FimT D Rpic_2140 putative transmembrane protein K08086 fimV; pilus assembly protein FimV D Rpic_4245 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Rpic_0594 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Rpic_4247 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Rpic_0592 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Rpic_4248 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Rpic_0591 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Rpic_4249 putative pilus assembly protein K02282 cpaE; pilus assembly protein CpaE D Rpic_0589 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Rpic_4250 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Rpic_0588 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Rpic_1525 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Rpic_5016 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Rpic_0587 type II secretion system protein K12510 tadB; tight adherence protein B D Rpic_4251 type II secretion system protein K12510 tadB; tight adherence protein B D Rpic_0586 type II secretion system protein K12511 tadC; tight adherence protein C D Rpic_4252 type II secretion system protein K12511 tadC; tight adherence protein C D Rpic_4253 Tetratricopeptide TPR_2 repeat protein K27079 tadD; tight adherence protein D D Rpic_4255 putative transmembrane protein K27080 tadG; tight adherence protein G D Rpic_4244 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Rpic_0597 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Rpic_0595 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Rpic_0596 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Rpic_4087 protein of unknown function YGGT K02221 yggT; YggT family protein D Rpic_0786 putative ComEA-related signal peptide protein K02237 comEA; competence protein ComEA D Rpic_0963 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D Rpic_4067 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Rpic_4066 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Rpic_4731 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Rpic_4729 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Rpic_4728 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Rpic_4755 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Rpic_4756 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ D Rpic_4757 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Rpic_4758 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Rpic_4759 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Rpic_1520 conserved hypothetical protein K03201 virB6; type IV secretion system protein VirB6 D Rpic_2643 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Rpic_1519 conserved hypothetical protein K12070 traI; conjugal transfer pilus assembly protein TraI D Rpic_1518 conserved hypothetical protein K12071 traD; conjugal transfer pilus assembly protein TraD D Rpic_3134 putative thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D Rpic_2645 P-type conjugative transfer ATPase TrbB K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8] D Rpic_2646 Conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC D Rpic_1523 conserved hypothetical protein K20529 trbD; type IV secretion system protein TrbD D Rpic_5014 type IV secretory pathway VirB3 family protein K20529 trbD; type IV secretion system protein TrbD D Rpic_2647 putative conjugal transfer TrbD transmembrane protein K20529 trbD; type IV secretion system protein TrbD D Rpic_1522 type IV secretory pathway VirB4 components-like protein K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D Rpic_5013 Type IV secretory pathway VirB4 protein-like protein K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D Rpic_2648 AAA ATPase K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D Rpic_1526 conserved hypothetical protein K20531 trbF; type IV secretion system protein TrbF D Rpic_2651 Conjugal transfer protein K20531 trbF; type IV secretion system protein TrbF D Rpic_5009 hypothetical protein K20531 trbF; type IV secretion system protein TrbF D Rpic_1527 Conjugal transfer protein TrbG/VirB9/CagX K20532 trbG; type IV secretion system protein TrbG D Rpic_2652 P-type conjugative transfer protein TrbG K20532 trbG; type IV secretion system protein TrbG D Rpic_5008 Conjugal transfer protein TrbG/VirB9/CagX K20532 trbG; type IV secretion system protein TrbG D Rpic_1528 conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D Rpic_2653 conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D Rpic_5007 conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D Rpic_3193 P-type conjugative transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ D Rpic_5012 hypothetical protein K20266 trbJ; type IV secretion system protein TrbJ D Rpic_2649 P-type conjugative transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ D Rpic_1521 conserved hypothetical protein K20266 trbJ; type IV secretion system protein TrbJ D Rpic_2650 P-type conjugative transfer protein TrbL K07344 trbL; type IV secretion system protein TrbL D Rpic_3191 hypothetical protein K07344 trbL; type IV secretion system protein TrbL D Rpic_2254 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D Rpic_3809 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D Rpic_0761 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D Rpic_0010 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D Rpic_3816 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D Rpic_0765 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D Rpic_3811 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein D Rpic_0763 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein D Rpic_3079 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Rpic_0212 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Rpic_2959 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Rpic_3320 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Rpic_2960 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Rpic_2215 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Rpic_3277 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Rpic_3056 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Rpic_0241 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Rpic_2958 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Rpic_3757 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Rpic_3219 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Rpic_3218 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Rpic_3217 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:rpi02042] D Rpic_4349 Zonular occludens toxin K10954 zot; zona occludens toxin D Rpic_2548 Zonular occludens toxin K10954 zot; zona occludens toxin D Rpic_1395 Zonular occludens toxin K10954 zot; zona occludens toxin D Rpic_1399 Zonular occludens toxin K10954 zot; zona occludens toxin D Rpic_3069 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Rpic_2476 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Rpic_3103 channel protein, hemolysin III family K11068 hlyIII; hemolysin III D Rpic_3050 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D Rpic_4613 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D Rpic_0175 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] C 02022 Two-component system [BR:rpi02022] D Rpic_2020 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Rpic_3737 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Rpic_2021 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Rpic_0939 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Rpic_4186 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Rpic_1899 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Rpic_1898 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Rpic_4185 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Rpic_4210 integral membrane sensor signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D Rpic_4211 two component transcriptional regulator, winged helix family K07664 baeR; two-component system, OmpR family, response regulator BaeR D Rpic_1781 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1759 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1717 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1842 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1741 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1718 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_1742 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_1760 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_1841 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_1780 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_0576 integral membrane sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D Rpic_0575 two component transcriptional regulator, winged helix family K07666 qseB; two-component system, OmpR family, response regulator QseB D Rpic_3592 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D Rpic_3370 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D Rpic_3213 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Rpic_3604 histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Rpic_3553 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Rpic_3212 two component transcriptional regulator, winged helix family K07774 tctD; two-component system, OmpR family, response regulator TctD D Rpic_3603 two component transcriptional regulator, winged helix family K07774 tctD; two-component system, OmpR family, response regulator TctD D Rpic_4862 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Rpic_2942 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Rpic_3625 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Rpic_1674 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Rpic_4983 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Rpic_4863 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Rpic_0470 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Rpic_3626 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Rpic_3552 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Rpic_4674 multi-sensor signal transduction histidine kinase K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D Rpic_4675 two component transcriptional regulator, LuxR family K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D Rpic_4844 two component transcriptional regulator, LuxR family K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D Rpic_3357 two component transcriptional regulator, LuxR family K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D Rpic_3417 two component transcriptional regulator, LuxR family K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D Rpic_3595 two component transcriptional regulator, LuxR family K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D Rpic_4751 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Rpic_3358 multi-sensor hybrid histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D Rpic_3808 multi-sensor hybrid histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D Rpic_0759 multi-sensor hybrid histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D Rpic_3728 integral membrane sensor signal transduction histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D Rpic_1088 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Rpic_1089 nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Rpic_3672 multi-sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Rpic_3671 two component transcriptional regulator, Fis family K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D Rpic_3053 multi-sensor signal transduction histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D Rpic_3052 two component, sigma54 specific, transcriptional regulator, Fis family K02667 pilR; two-component system, NtrC family, response regulator PilR D Rpic_0187 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Rpic_3788 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Rpic_0188 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Rpic_3789 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Rpic_4048 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Rpic_4834 putative CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Rpic_4047 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Rpic_4055 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Rpic_4831 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Rpic_4054 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Rpic_4573 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Rpic_0616 CheA signal transduction histidine kinase K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D Rpic_0612 response regulator receiver protein K02657 pilG; twitching motility two-component system response regulator PilG D Rpic_0613 response regulator receiver protein K02658 pilH; twitching motility two-component system response regulator PilH D Rpic_3141 GAF sensor signal transduction histidine kinase K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3] D Rpic_3712 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Rpic_3711 two component transcriptional regulator, Fis family K15012 regA; two-component system, response regulator RegA D Rpic_2975 integral membrane sensor signal transduction histidine kinase K19621 phcS; two-component system, sensor histidine kinase PhcS [EC:2.7.13.3] D Rpic_2976 response regulator receiver sensor signal transduction histidine kinase K19622 phcR; two-component system, response regulator PhcR D Rpic_2977 response regulator receiver protein K19623 phcQ; two-component system, probable response regulator PhcQ D Rpic_0238 response regulator receiver and ANTAR domain protein K07183 nasT; two-component system, response regulator / RNA-binding antiterminator C 02035 Bacterial motility proteins [BR:rpi02035] D Rpic_4048 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Rpic_4834 putative CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Rpic_4049 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Rpic_4053 CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D Rpic_4052 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Rpic_4054 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Rpic_4047 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Rpic_4055 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Rpic_4831 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Rpic_4056 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ D Rpic_4573 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Rpic_0509 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_4051 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_3412 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_0536 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Rpic_0995 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_0996 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_3042 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_3501 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Rpic_4237 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_2095 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Rpic_4696 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D Rpic_4050 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D Rpic_3951 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Rpic_4729 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Rpic_4728 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Rpic_4727 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Rpic_4756 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ D Rpic_4757 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Rpic_4758 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Rpic_4759 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Rpic_4067 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Rpic_4066 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Rpic_4730 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Rpic_4754 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Rpic_4755 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Rpic_4731 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Rpic_4784 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Rpic_4792 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D Rpic_4785 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Rpic_4753 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Rpic_4732 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Rpic_4743 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Rpic_4726 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Rpic_1755 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Rpic_4791 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Rpic_4790 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Rpic_4789 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Rpic_4787 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Rpic_4786 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Rpic_4783 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D Rpic_4788 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE D Rpic_4782 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Rpic_4781 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Rpic_4794 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D Rpic_4750 flagellin domain protein K02406 fliC; flagellin D Rpic_4749 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Rpic_4442 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Rpic_4748 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Rpic_4747 putative flagellar protein FliT K02423 fliT; flagellar protein FliT D Rpic_3139 conserved hypothetical protein K02423 fliT; flagellar protein FliT D Rpic_4043 flagellar transcriptional activator K02403 flhD; flagellar transcriptional activator FlhD D Rpic_4044 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC D Rpic_4070 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Rpic_4045 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D Rpic_4046 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Rpic_4793 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Rpic_4068 GTP-binding signal recognition particle SRP54 G-domain K02404 flhF; flagellar biosynthesis protein FlhF D Rpic_4069 conserved hypothetical protein K04562 flhG; flagellar biosynthesis protein FlhG D Rpic_0612 response regulator receiver protein K02657 pilG; twitching motility two-component system response regulator PilG D Rpic_0613 response regulator receiver protein K02658 pilH; twitching motility two-component system response regulator PilH D Rpic_0614 CheW protein K02659 pilI; twitching motility protein PilI D Rpic_0615 methyl-accepting chemotaxis sensory transducer K02660 pilJ; twitching motility protein PilJ D Rpic_0616 CheA signal transduction histidine kinase K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D Rpic_3052 two component, sigma54 specific, transcriptional regulator, Fis family K02667 pilR; two-component system, NtrC family, response regulator PilR D Rpic_3053 multi-sensor signal transduction histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D Rpic_2918 twitching motility protein K02669 pilT; twitching motility protein PilT D Rpic_2917 twitching motility protein K02670 pilU; twitching motility protein PilU D Rpic_0478 type 4 fimbrial pilin signal peptide protein K02650 pilA; type IV pilus assembly protein PilA D Rpic_0477 putative type 4 fimbrial pilin signal peptide protein K02650 pilA; type IV pilus assembly protein PilA D Rpic_0480 pilin subfamily protein K02650 pilA; type IV pilus assembly protein PilA D Rpic_3070 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D Rpic_3071 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Rpic_3072 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Rpic_1057 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D Rpic_3249 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ D Rpic_3250 Pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP D Rpic_3251 Pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO D Rpic_3252 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Rpic_3253 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Rpic_1423 type IV pilus assembly PilZ K02676 pilZ; type IV pilus assembly protein PilZ D Rpic_0671 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D Rpic_2914 putative type 4 fimbrial biogenesis related transmembrane protein K02671 pilV; type IV pilus assembly protein PilV D Rpic_0668 putative transmembrane protein K02672 pilW; type IV pilus assembly protein PilW D Rpic_0672 type IV pilus assembly protein PilW K02672 pilW; type IV pilus assembly protein PilW D Rpic_2913 putative type 4 fimbrial biogenesis PilW-related protein transmembrane K02672 pilW; type IV pilus assembly protein PilW D Rpic_0673 conserved hypothetical protein K02673 pilX; type IV pilus assembly protein PilX D Rpic_2911 putative type 4 fimbrial biogenesis PilY1-related protein signal peptide K02674 pilY1; type IV pilus assembly protein PilY1 D Rpic_0674 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein K02674 pilY1; type IV pilus assembly protein PilY1 D Rpic_0666 putative type-4 frimbrial pilin-related signal peptide protein K02655 pilE; type IV pilus assembly protein PilE D Rpic_0676 type IV pilin K02655 pilE; type IV pilus assembly protein PilE D Rpic_2916 putative type 4 fimbrial biogenesis transmembrane protein K02655 pilE; type IV pilus assembly protein PilE D Rpic_4244 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Rpic_0597 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Rpic_0595 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Rpic_0596 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Rpic_4245 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Rpic_0594 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Rpic_4247 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Rpic_0592 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Rpic_4248 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Rpic_0591 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Rpic_4249 putative pilus assembly protein K02282 cpaE; pilus assembly protein CpaE D Rpic_0589 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Rpic_4250 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Rpic_0588 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Rpic_1525 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Rpic_5016 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Rpic_3809 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D Rpic_0761 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D Rpic_0010 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D Rpic_3816 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D Rpic_0765 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D Rpic_3811 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein D Rpic_0763 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:rpi04812] D Rpic_3690 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Rpic_1555 conserved hypothetical protein K18640 parM; plasmid segregation protein ParM D Rpic_3084 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Rpic_3085 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Rpic_3561 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Rpic_3562 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Rpic_3563 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Rpic_4960 conserved hypothetical protein K03496 parA; chromosome partitioning protein D Rpic_2621 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Rpic_2655 putative partition-related protein K03496 parA; chromosome partitioning protein D Rpic_3783 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Rpic_1508 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Rpic_3521 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Rpic_2612 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Rpic_3520 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Rpic_3784 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Rpic_1509 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Rpic_4994 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:rpi04147] D Rpic_0851 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Rpic_0972 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Rpic_2988 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Rpic_0491 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Rpic_0492 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Rpic_3482 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Rpic_1006 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Rpic_3427 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_4400 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_0579 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_4653 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Rpic_2870 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Rpic_1861 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Rpic_3985 SMP-30/Gluconolaconase/LRE domain protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D Rpic_4042 SMP-30/Gluconolaconase/LRE domain protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D Rpic_1306 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Rpic_3321 translation elongation factor Tu K02358 tuf; elongation factor Tu D Rpic_3299 translation elongation factor Tu K02358 tuf; elongation factor Tu D Rpic_4702 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Rpic_2813 Bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D Rpic_3685 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_3104 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_0413 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_0109 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_3980 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_2412 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Rpic_0126 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1445 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_0414 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_4928 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1910 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_1915 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Rpic_3656 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Rpic_2810 Nucleoside-triphosphate--adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Rpic_0272 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Rpic_2577 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Rpic_2829 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Rpic_4022 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Rpic_4535 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D Rpic_2266 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Rpic_3937 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Rpic_3334 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Rpic_3267 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Rpic_3388 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Rpic_4300 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Rpic_3550 transcriptional coactivator/pterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Rpic_3653 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Rpic_3654 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Rpic_3984 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Rpic_3740 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Rpic_0380 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Rpic_0812 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D Rpic_1944 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_1099 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Rpic_2640 Electron transfer flavoprotein alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit D Rpic_0794 Electron transfer flavoprotein alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit D Rpic_0356 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D Rpic_4867 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Rpic_2216 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Rpic_0209 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:rpi02048] D Rpic_0447 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Rpic_3172 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Rpic_0448 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Rpic_3173 restriction modification system, type I K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Rpic_0450 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Rpic_3176 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Rpic_3178 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Rpic_0004 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Rpic_1724 conserved hypothetical protein K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4] D Rpic_1835 conserved hypothetical protein K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4] D Rpic_2136 DNA methylase N-4/N-6 domain protein K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D Rpic_3871 DNA topoisomerase type IA zn finger domain protein K07448 mrr; restriction system protein D Rpic_4949 transcriptional modulator of MazE/toxin, MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D Rpic_3179 addiction module toxin, RelE/StbE family K19092 parE1_3_4; toxin ParE1/3/4 D Rpic_1479 addiction module toxin, RelE/StbE family K19092 parE1_3_4; toxin ParE1/3/4 D Rpic_1854 addiction module toxin, RelE/StbE family K19092 parE1_3_4; toxin ParE1/3/4 D Rpic_3169 plasmid maintenance system killer K07334 higB-1; toxin HigB-1 D Rpic_3170 plasmid maintenance system antidote protein, XRE family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Rpic_4588 conserved hypothetical protein K21495 fitA; antitoxin FitA D Rpic_3084 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Rpic_3690 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Rpic_0831 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Rpic_0829 DNA topoisomerase (ATP-hydrolyzing) K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Rpic_1022 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Rpic_2147 protein of unknown function DUF339 K09159 cptB; antitoxin CptB D Rpic_0884 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Rpic_2002 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Rpic_1725 conserved hypothetical protein K19170 dndC; DNA sulfur modification protein DndC C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:rpi04090] C 01504 Antimicrobial resistance genes [BR:rpi01504] D Rpic_3817 Beta-lactamase K21276 blaOXA-22; beta-lactamase class D OXA-22 [EC:3.5.2.6] D Rpic_3962 Beta-lactamase K21277 blaOXA-60; beta-lactamase class D OXA-60 [EC:3.5.2.6] D Rpic_1781 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1759 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1717 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1842 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1741 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Rpic_1718 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_1742 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_1760 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_1841 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_1780 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D Rpic_3993 protein of unknown function DUF470 K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D Rpic_3745 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Rpic_3746 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Rpic_3747 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Rpic_1892 acriflavin resistance protein K18303 mexK; multidrug efflux pump D Rpic_0841 efflux transporter, RND family, MFP subunit K18094 mexX; membrane fusion protein, multidrug efflux system D Rpic_0842 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18095 mexY; multidrug efflux pump D Rpic_1805 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Rpic_3542 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Rpic_4286 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Rpic_0645 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Rpic_4227 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D Rpic_4225 efflux transporter, RND family, MFP subunit K18901 bpeE; membrane fusion protein, multidrug efflux system D Rpic_4897 efflux transporter, RND family, MFP subunit K18901 bpeE; membrane fusion protein, multidrug efflux system D Rpic_4224 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18902 bpeF; multidrug efflux pump D Rpic_4223 RND efflux system, outer membrane lipoprotein, NodT family K18903 oprC; outer membrane protein, multidrug efflux system D Rpic_4898 RND efflux system, outer membrane lipoprotein, NodT family K18903 oprC; outer membrane protein, multidrug efflux system C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rpi00537] D Rpic_3653 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Rpic_3654 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins [BR:rpi03200] D Rpic_1135 lysis protein K14744 rzpD; prophage endopeptidase [EC:3.4.-.-] C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:rpi03100] D Rpic_R0057 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Rpic_R0014 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Rpic_R0043 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Rpic_R0062 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Rpic_R0053 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Rpic_R0026 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Rpic_R0056 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Rpic_R0006 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Rpic_R0032 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Rpic_R0012 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Rpic_R0034 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Rpic_R0016 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Rpic_R0019 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Rpic_R0009 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Rpic_R0005 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Rpic_R0001 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Rpic_R0015 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Rpic_R0049 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Rpic_R0003 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Rpic_R0007 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Rpic_R0008 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Rpic_R0018 tRNA-His K14226 tRNA-His; tRNA His D Rpic_R0054 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Rpic_R0063 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Rpic_R0044 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Rpic_R0030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Rpic_R0039 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Rpic_R0011 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Rpic_R0017 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Rpic_R0059 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Rpic_R0021 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Rpic_R0004 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Rpic_R0010 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Rpic_R0002 tRNA-Met K14230 tRNA-Met; tRNA Met D Rpic_R0022 tRNA-Met K14230 tRNA-Met; tRNA Met D Rpic_R0023 tRNA-Met K14230 tRNA-Met; tRNA Met D Rpic_R0035 tRNA-Met K14230 tRNA-Met; tRNA Met D Rpic_R0058 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Rpic_R0040 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Rpic_R0027 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Rpic_R0024 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Rpic_R0013 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Rpic_R0037 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Rpic_R0033 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Rpic_R0029 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Rpic_R0048 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Rpic_R0031 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Rpic_R0046 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Rpic_R0047 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Rpic_R0050 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Rpic_R0028 tRNA-Val K14237 tRNA-Val; tRNA Val D Rpic_R0025 tRNA-Val K14237 tRNA-Val; tRNA Val D Rpic_R0020 tRNA-Val K14237 tRNA-Val; tRNA Val D Rpic_R0045 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Rpic_R0055 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Rpic_R0064 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Rpic_R0042 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Rpic_R0061 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Rpic_R0052 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Rpic_R0041 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Rpic_R0051 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Rpic_R0060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Rpic_R0068 ffs; SRP RNA K01983 ffs; SRP RNA D Rpic_R0066 rnpB; Bacterial RNase P K01978 rnpB; M1 RNA D Rpic_R0067 tmRNA as predicted by Rfam (RF00023), score 191.75 K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Rpic_0894 short-chain dehydrogenase/reductase SDR K16216 yueD; benzil reductase ((S)-benzoin forming) [EC:1.1.1.320] D Rpic_2695 aldo/keto reductase K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346] D Rpic_0564 4-hydroxythreonine-4-phosphate dehydrogenase K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409] D Rpic_3730 NAD-dependent epimerase/dehydratase K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410] D Rpic_3732 3-hydroxyisobutyrate dehydrogenase K08319 ltnD; L-threonate 2-dehydrogenase [EC:1.1.1.411] D Rpic_3700 Berberine/berberine domain protein K26080 E1.1.3.29; N-acylhexosamine oxidase [EC:1.1.3.29] D Rpic_0718 putative transmembrane dehydrogenase (small subunit) oxidoreductase protein K23274 fdhS; fructose 5-dehydrogenase small subunit [EC:1.1.5.14] D Rpic_1354 (2Fe-2S)-binding domain protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D Rpic_1352 molybdopterin dehydrogenase FAD-binding K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D Rpic_1353 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D Rpic_3404 pyruvate ferredoxin/flavodoxin oxidoreductase K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D Rpic_4232 NADH:flavin oxidoreductase/NADH oxidase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D Rpic_1440 Alcohol dehydrogenase zinc-binding domain protein K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-] D Rpic_2490 coenzyme PQQ biosynthesis protein C K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11] D Rpic_0290 coenzyme PQQ biosynthesis protein C K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11] D Rpic_4805 (2Fe-2S)-binding domain protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D Rpic_2091 (2Fe-2S)-binding domain protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D Rpic_4804 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D Rpic_2090 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D Rpic_1986 Electron-transferring-flavoprotein dehydrogenase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D Rpic_0410 putative transmembrane protein K18208 RNLS; renalase [EC:1.6.3.5] D Rpic_2217 NAD(P)H quinone oxidoreductase, PIG3 family K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D Rpic_1047 Alcohol dehydrogenase zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D Rpic_2381 Alcohol dehydrogenase zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D Rpic_3799 Alcohol dehydrogenase zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D Rpic_3958 NAD(P)H dehydrogenase (quinone) K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D Rpic_4152 NAD(P)H dehydrogenase (quinone) K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D Rpic_1413 hypothetical protein K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D Rpic_3942 alkyl hydroperoxide reductase, F subunit K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D Rpic_0714 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Rpic_1457 methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D Rpic_2178 Glutathione S-transferase domain K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D Rpic_0078 Glutathione S-transferase domain K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D Rpic_3259 oxidoreductase molybdopterin binding K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D Rpic_4206 Di-haem cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D Rpic_1889 Di-haem cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D Rpic_1192 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Rpic_3035 Redoxin domain protein K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Rpic_0704 Peroxidase K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Rpic_3941 peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D Rpic_3445 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D Rpic_4744 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D Rpic_4803 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D Rpic_1901 Carboxymuconolactone decarboxylase K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28] D Rpic_1900 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28] D Rpic_2406 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D Rpic_0422 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D Rpic_4463 cysteine dioxygenase type I K24700 mdo; 3-mercaptopropionate dioxygenase [EC:1.13.11.91] D Rpic_3803 2OG-Fe(II) oxygenase K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-] D Rpic_0099 2OG-Fe(II) oxygenase K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-] D Rpic_3609 Oxidoreductase FAD-binding domain protein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D Rpic_1787 mercuric reductase K00520 merA; mercuric reductase [EC:1.16.1.1] D Rpic_3912 multicopper oxidase type 3 K22348 moxA; manganese oxidase [EC:1.16.3.3] D Rpic_1180 Oxidoreductase FAD-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Rpic_3469 arsenate reductase and related K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D Rpic_1820 protein tyrosine phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D Rpic_1821 protein tyrosine phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D Rpic_3579 protein tyrosine phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D Rpic_3826 protein tyrosine phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D Rpic_2492 coenzyme PQQ biosynthesis protein E K06139 pqqE; PqqA peptide cyclase [EC:1.21.98.4] D Rpic_0292 coenzyme PQQ biosynthesis protein E K06139 pqqE; PqqA peptide cyclase [EC:1.21.98.4] D Rpic_0647 Protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Rpic_1049 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Rpic_0716 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D Rpic_1711 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D Rpic_3620 Trans-aconitate 2-methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144] D Rpic_4884 Carbamoyltransferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-] D Rpic_4947 malonate decarboxylase, epsilon subunit K13935 mdcH; malonate decarboxylase epsilon subunit [EC:2.3.1.39] D Rpic_4712 Beta-ketoacyl-acyl-carrier-protein synthase I K16872 E2.3.1.207; beta-ketodecanoyl-[acyl-carrier-protein] synthase [EC:2.3.1.207] D Rpic_0403 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D Rpic_5005 TraB family protein K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D Rpic_3492 GCN5-related N-acetyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-] D Rpic_4837 GCN5-related N-acetyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-] D Rpic_1930 leucyl/phenylalanyl-tRNA/protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D Rpic_3856 transglutaminase domain protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13] D Rpic_1931 Arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D Rpic_4940 triphosphoribosyl-dephospho-CoA synthase MdcB K13930 mdcB; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D Rpic_2674 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Rpic_4057 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Rpic_1846 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Rpic_1886 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Rpic_3733 type III effector Hrp-dependent outers K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217] D Rpic_1297 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D Rpic_2893 (Glutamate--ammonia-ligase) adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D Rpic_3149 RNA-directed DNA polymerase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Rpic_4946 phosphoribosyl-dephospho-CoA transferase K13934 mdcG; phosphoribosyl-dephospho-CoA transferase [EC:2.7.7.66] D Rpic_1456 protein of unknown function UPF0061 K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D Rpic_3805 Pyruvate, water dikinase K22579 rph; rifampicin phosphotransferase [EC:2.7.9.6] D Rpic_0128 (Isocitrate dehydrogenase (NADP(+))) kinase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-] D Rpic_0260 HPr kinase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D Rpic_1041 Formyl-CoA transferase K07749 frc; formyl-CoA transferase [EC:2.8.3.16] D Rpic_0843 conserved hypothetical protein K03928 yvaK; carboxylesterase [EC:3.1.1.1] D Rpic_0191 Appr-1-p processing domain protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D Rpic_4768 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Rpic_1939 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Rpic_1433 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Rpic_0680 tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Rpic_3629 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Rpic_0982 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D Rpic_2016 phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D Rpic_0518 metal dependent phosphohydrolase K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Rpic_2783 metal dependent phosphohydrolase K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Rpic_0962 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Rpic_1422 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Rpic_2043 Lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17] D Rpic_4195 N-acyl-D-amino-acid deacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81] D Rpic_3679 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Rpic_1273 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Rpic_2825 peptidase S45 penicillin amidase K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97] D Rpic_0304 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D Rpic_2895 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D Rpic_2259 Hydroxydechloroatrazine ethylaminohydrolase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32] D Rpic_4001 Endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Rpic_3128 adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25] D Rpic_0911 maf protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D Rpic_3854 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Rpic_4810 protein of unknown function DUF1234 K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D Rpic_1220 protein of unknown function DUF1234 K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D Rpic_4942 malonate decarboxylase, beta subunit K13932 mdcD; malonate decarboxylase beta subunit [EC:4.1.1.87] D Rpic_4943 malonate decarboxylase, gamma subunit K13933 mdcE; malonate decarboxylase gamma subunit [EC:4.1.1.87] D Rpic_3734 class II aldolase/adducin family protein K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104] D Rpic_3885 alpha/beta hydrolase fold K22318 oleB; cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114] D Rpic_1703 67 kDa myosin-cross-reactive antigen family protein K10254 ohyA; oleate hydratase [EC:4.2.1.53] D Rpic_1860 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Rpic_4000 Pyridoxal-5'-phosphate-dependent protein beta subunit K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16] D Rpic_3736 Hydroxypyruvate isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D Rpic_0089 methylmalonyl-CoA mutase, large subunit K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13] D Rpic_3968 cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30] D Rpic_3969 cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30] D Rpic_3026 UDP-N-acetylmuramate K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D Rpic_0872 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D Rpic_1713 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D Rpic_1102 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D Rpic_1643 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D Rpic_1815 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D Rpic_1753 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D Rpic_4809 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D Rpic_4421 magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism D Rpic_1935 protein of unknown function DUF224 cysteine-rich region domain protein K18928 lldE; L-lactate dehydrogenase complex protein LldE D Rpic_1934 iron-sulfur cluster binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF D Rpic_0897 protein of unknown function DUF162 K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D Rpic_4278 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein D Rpic_2580 formate dehydrogenase subunit FdhD K02379 fdhD; FdhD protein D Rpic_0890 ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S D Rpic_0956 4Fe-4S ferredoxin iron-sulfur binding domain protein K05524 fdxA; ferredoxin D Rpic_4480 4Fe-4S ferredoxin iron-sulfur binding domain protein K05524 fdxA; ferredoxin D Rpic_0885 FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins D Rpic_2843 NapD family protein K02570 napD; periplasmic nitrate reductase NapD D Rpic_2842 periplasmic nitrate reductase, NapE protein K02571 napE; periplasmic nitrate reductase NapE D Rpic_2846 periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family K02569 napC; cytochrome c-type protein NapC D Rpic_2639 Electron transfer flavoprotein alpha/beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D Rpic_0793 Electron transfer flavoprotein alpha/beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D Rpic_4204 protein of unknown function DUF1458 K09165 K09165; dodecin C 99983 Lipid metabolism D Rpic_3639 acyl-CoA dehydrogenase domain protein K09456 aidB; putative acyl-CoA dehydrogenase C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D Rpic_2919 alanine racemase domain protein K06997 yggS; PLP dependent protein D Rpic_0863 conserved hypothetical protein K22479 argA; N-acetyltransferase C 99986 Glycan metabolism D Rpic_0781 putative transmembrane protein K08992 lapA; lipopolysaccharide assembly protein A D Rpic_0782 Tetratricopeptide TPR_2 repeat protein K19804 lapB; lipopolysaccharide assembly protein B D Rpic_2398 glycosyl transferase family 25 K07270 K07270; glycosyl transferase, family 25 C 99987 Cofactor metabolism D Rpic_2569 HemY domain protein K02498 hemY; HemY protein D Rpic_1693 ABC-1 domain protein K03688 ubiB; ubiquinone biosynthesis protein D Rpic_0336 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D Rpic_0335 Sterol-binding domain protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D Rpic_0196 protein of unknown function DUF526 K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D Rpic_2111 conserved hypothetical protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D Rpic_4662 conserved hypothetical protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D Rpic_0499 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein D Rpic_4673 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein C 99988 Secondary metabolism D Rpic_4031 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D Rpic_4289 DoxX family protein K15977 K15977; putative oxidoreductase D Rpic_2764 DoxX family protein K15977 K15977; putative oxidoreductase D Rpic_3848 GCN5-related N-acetyltransferase K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D Rpic_4276 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein D Rpic_3782 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein D Rpic_2735 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein D Rpic_1310 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein D Rpic_4275 putative cold-shock DNA-binding domain protein K03704 cspA; cold shock protein D Rpic_0198 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2 D Rpic_1924 RNA binding S1 domain protein K06959 tex; protein Tex C 99974 Translation D Rpic_4381 beta-lactamase domain protein K07576 K07576; metallo-beta-lactamase family protein D Rpic_1708 beta-lactamase domain protein K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D Rpic_2734 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D Rpic_1870 trigger factor K03545 tig; trigger factor D Rpic_3258 Ferric reductase domain protein transmembrane component domain K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D Rpic_2183 UreE urease accessory domain protein K03187 ureE; urease accessory protein D Rpic_2182 Urease accessory protein UreF K03188 ureF; urease accessory protein D Rpic_2181 urease accessory protein UreG K03189 ureG; urease accessory protein D Rpic_2188 Urease accessory protein UreD K03190 ureD; urease accessory protein D Rpic_2186 HupE/UreJ protein K03192 ureJ; urease accessory protein D Rpic_1301 SsrA-binding protein K03664 smpB; SsrA-binding protein D Rpic_0194 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein D Rpic_0967 conserved hypothetical protein K07395 K07395; putative proteasome-type protease D Rpic_0725 DSBA oxidoreductase K07396 K07396; putative protein-disulfide isomerase D Rpic_1321 conserved hypothetical protein K07396 K07396; putative protein-disulfide isomerase D Rpic_0365 OsmC family protein K07397 yhfA; putative redox protein D Rpic_0232 OsmC family protein K07397 yhfA; putative redox protein D Rpic_3264 ResB family protein K07399 resB; cytochrome c biogenesis protein D Rpic_2248 xanthine dehydrogenase accessory protein XdhC K07402 xdhC; xanthine dehydrogenase accessory factor D Rpic_1348 protein of unknown function DUF182 K07402 xdhC; xanthine dehydrogenase accessory factor D Rpic_0749 protein of unknown function DUF107 K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D Rpic_2712 DNA repair protein RadC K03630 radC; DNA repair protein RadC D Rpic_0900 protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC D Rpic_3175 SMC domain protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D Rpic_3463 protein of unknown function UPF0102 K07460 yraN; putative endonuclease D Rpic_3681 DNA protecting protein DprA K04096 smf; DNA processing protein D Rpic_2552 AAA ATPase central domain protein K07478 ycaJ; putative ATPase D Rpic_1551 P4 alpha zinc-binding domain protein K06919 K06919; putative DNA primase/helicase D Rpic_2066 transposase IS3/IS911 family protein K07483 K07483; transposase D Rpic_0009 transposase IS3/IS911 family protein K07483 K07483; transposase D Rpic_3814 transposase IS3/IS911 family protein K07483 K07483; transposase D Rpic_3324 conserved hypothetical protein K07483 K07483; transposase D Rpic_1140 transposase IS3/IS911 family protein K07483 K07483; transposase D Rpic_1168 transposase IS3/IS911 family protein K07483 K07483; transposase D Rpic_1487 conserved hypothetical protein K07483 K07483; transposase D Rpic_1827 transposase IS3/IS911 family protein K07483 K07483; transposase D Rpic_3322 transposase IS66 K07484 K07484; transposase D Rpic_3323 IS66 Orf2 family protein K07484 K07484; transposase D Rpic_1169 IS66 Orf2 family protein K07484 K07484; transposase D Rpic_1170 transposase IS66 K07484 K07484; transposase D Rpic_1485 transposase IS66 K07484 K07484; transposase D Rpic_1486 IS66 Orf2 family protein K07484 K07484; transposase D Rpic_3244 protein of unknown function DUF1568 K07491 rayT; REP-associated tyrosine transposase D Rpic_4980 TniA transposase K07497 K07497; putative transposase D Rpic_4577 Integrase catalytic region K07497 K07497; putative transposase D Rpic_0008 Integrase catalytic region K07497 K07497; putative transposase D Rpic_2936 TniA transposase K07497 K07497; putative transposase D Rpic_3619 Integrase catalytic region K07497 K07497; putative transposase D Rpic_2522 Integrase catalytic region K07497 K07497; putative transposase D Rpic_2672 Integrase catalytic region K07497 K07497; putative transposase D Rpic_2787 Integrase catalytic region K07497 K07497; putative transposase D Rpic_1121 Integrase catalytic region K07497 K07497; putative transposase D Rpic_1141 integrase catalytic region K07497 K07497; putative transposase D Rpic_1020 Integrase catalytic region K07497 K07497; putative transposase D Rpic_3815 Integrase catalytic region K07497 K07497; putative transposase D Rpic_1495 integrase catalytic region K07497 K07497; putative transposase D Rpic_1580 conserved hypothetical protein K07497 K07497; putative transposase D Rpic_1680 TniA transposase K07497 K07497; putative transposase D Rpic_1826 Integrase catalytic region K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D Rpic_1036 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Rpic_1962 amino acid permease-associated region K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D Rpic_4811 citrate/H+ symporter, CitMHS family K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D Rpic_1188 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D Rpic_3821 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D Rpic_0563 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D Rpic_0338 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D Rpic_2385 NCS1 nucleoside transporter family K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family C 99978 Cell growth D Rpic_1458 intracellular septation protein A K06190 ispZ; intracellular septation protein D Rpic_4655 protein of unknown function DUF542 ScdA domain protein K07322 ytfE; regulator of cell morphogenesis and NO signaling C 99993 Cell motility D Rpic_3659 TfoX domain protein K07343 tfoX; DNA transformation protein and related proteins D Rpic_3810 Pili assembly chaperone, N-terminal K15540 ecpD; chaperone protein EcpD D Rpic_0762 Pili assembly chaperone, N-terminal K15540 ecpD; chaperone protein EcpD C 99995 Signaling proteins D Rpic_3727 carbon starvation protein CstA K06200 cstA; carbon starvation protein D Rpic_1126 GTP-binding protein TypA K06207 typA; GTP-binding protein D Rpic_0031 CBS domain containing membrane protein K07168 K07168; CBS domain-containing membrane protein D Rpic_0407 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D Rpic_1191 PhoH family protein K07175 phoH2; PhoH-like ATPase D Rpic_2050 putative serine protein kinase, PrkA K07180 prkA; serine protein kinase D Rpic_0466 putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase K07182 K07182; CBS domain-containing protein D Rpic_2826 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D Rpic_2555 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein D Rpic_0252 outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB D Rpic_3237 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D Rpic_3037 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB D Rpic_1612 putative outer membrane lipoprotein transmembrane K06077 slyB; outer membrane lipoprotein SlyB D Rpic_1287 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein D Rpic_1050 Peptidase M23 K06194 nlpD; lipoprotein NlpD D Rpic_1149 Capsule polysaccharide biosynthesis protein K07265 kpsS; capsular polysaccharide export protein D Rpic_1163 Capsule polysaccharide biosynthesis protein K07266 kpsC; capsular polysaccharide export protein D Rpic_3245 OmpW family protein K07275 ompW; outer membrane protein D Rpic_2417 OmpW family protein K07275 ompW; outer membrane protein D Rpic_3545 OmpW family protein K07275 ompW; outer membrane protein D Rpic_0411 OmpW family protein K07275 ompW; outer membrane protein D Rpic_0721 AsmA family protein K07290 yhjG; AsmA family protein D Rpic_0055 secretion protein HlyD family protein K01993 ABC-2.TX; HlyD family secretion protein D Rpic_4367 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D Rpic_4423 secretion protein HlyD family protein K02005 ABC.CD.TX; HlyD family secretion protein D Rpic_4086 17 kDa surface antigen K04062 osmB; osmotically inducible lipoprotein OsmB D Rpic_4800 putative osmotically inducible lipoprotein B2 transmembrane K04062 osmB; osmotically inducible lipoprotein OsmB D Rpic_2127 putative osmotically inducible lipoprotein B1 transmembrane K04062 osmB; osmotically inducible lipoprotein OsmB D Rpic_2851 CcmE/CycJ protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE D Rpic_2854 cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Rpic_2855 cytochrome c-type biogenesis protein CcmI K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Rpic_1058 transcriptional regulator, XRE family K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D Rpic_2022 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein D Rpic_0205 BFD domain protein (2Fe-2S)-binding domain protein K02192 bfd; bacterioferritin-associated ferredoxin D Rpic_3337 periplasmic glucan biosynthesis protein MdoG K03670 mdoG; periplasmic glucans biosynthesis protein D Rpic_3964 periplasmic glucan biosynthesis protein MdoG K03670 mdoG; periplasmic glucans biosynthesis protein D Rpic_3154 periplasmic glucan biosynthesis protein MdoG K03670 mdoG; periplasmic glucans biosynthesis protein D Rpic_3269 CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D Rpic_3120 ApaG domain protein K06195 apaG; ApaG protein D Rpic_3255 iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY D Rpic_0724 hemerythrin-like metal-binding protein K07216 hr; hemerythrin D Rpic_4061 periplasmic copper-binding K07218 nosD; nitrous oxidase accessory protein D Rpic_2243 transcriptional regulator of molybdate metabolism, LysR family K07219 K07219; putative molybdopterin biosynthesis protein D Rpic_1839 copper resistance B precursor K07233 pcoB; copper resistance protein B D Rpic_1720 copper resistance B precursor K07233 pcoB; copper resistance protein B D Rpic_1778 copper resistance B precursor K07233 pcoB; copper resistance protein B D Rpic_1482 copper resistance B precursor K07233 pcoB; copper resistance protein B D Rpic_3610 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D Rpic_4064 NosL family protein K19342 nosL; copper chaperone NosL D Rpic_4065 conserved hypothetical protein K19342 nosL; copper chaperone NosL B B 09194 Poorly characterized C 99996 General function prediction only D Rpic_2131 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production D Rpic_0530 Mammalian cell entry related domain protein K06192 pqiB; paraquat-inducible protein B D Rpic_2488 coenzyme PQQ biosynthesis protein A K06135 pqqA; pyrroloquinoline quinone biosynthesis protein A D Rpic_0286 coenzyme PQQ biosynthesis protein A K06135 pqqA; pyrroloquinoline quinone biosynthesis protein A D Rpic_0289 coenzyme PQQ biosynthesis protein B K06136 pqqB; pyrroloquinoline quinone biosynthesis protein B D Rpic_2489 coenzyme PQQ biosynthesis protein B K06136 pqqB; pyrroloquinoline quinone biosynthesis protein B D Rpic_0291 coenzyme PQQ synthesis D K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D D Rpic_2491 coenzyme PQQ synthesis D K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D D Rpic_2241 globin K06886 glbN; hemoglobin D Rpic_4269 Patatin K07001 K07001; NTE family protein D Rpic_0838 Patatin K07001 K07001; NTE family protein D Rpic_1021 Patatin K07001 K07001; NTE family protein D Rpic_0065 Patatin K07001 K07001; NTE family protein D Rpic_0161 Patatin K07001 K07001; NTE family protein D Rpic_0840 patatin K07001 K07001; NTE family protein D Rpic_3718 pyrimidine 5'-nucleotidase K07025 K07025; putative hydrolase of the HAD superfamily D Rpic_0370 iron-sulfur cluster assembly accessory protein K15724 erpA; iron-sulfur cluster insertion protein D Rpic_3764 ribonuclease BN K07058 K07058; membrane protein D Rpic_1994 ribonuclease BN K07058 K07058; membrane protein D Rpic_4419 conserved hypothetical protein K07100 K07100; putative phosphoribosyl transferase D Rpic_4420 phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase D Rpic_2404 Rhodanese domain protein K07146 K07146; UPF0176 protein D Rpic_4569 3-demethylubiquinone-9 3-methyltransferase K04750 phnB; PhnB protein D Rpic_3647 Glyoxalase/bleomycin resistance protein/dioxygenase K04750 phnB; PhnB protein D Rpic_2120 protein of unknown function DUF336 K11477 glcG; glc operon protein GlcG D Rpic_4695 General secretory system II protein E domain protein K11740 nfrB; bacteriophage N4 adsorption protein B D Rpic_0607 LemA family protein K03744 lemA; LemA protein D Rpic_1695 LemA family protein K03744 lemA; LemA protein D Rpic_1356 CreA family protein K05805 creA; CreA protein D Rpic_2132 Sporulation domain protein K03749 dedD; DedD protein D Rpic_2835 SNARE associated Golgi protein K03975 dedA; membrane-associated protein D Rpic_0531 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D Rpic_0532 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D Rpic_3657 membrane protein of unknown function K08972 K08972; putative membrane protein D Rpic_0742 putative transmembrane protein K08983 K08983; putative membrane protein D Rpic_4116 protein of unknown function DUF1304 K08987 K08987; putative membrane protein D Rpic_4121 protein of unknown function DUF350 K08989 K08989; putative membrane protein D Rpic_3606 putative secreted protein K08995 K08995; putative membrane protein D Rpic_0121 conserved hypothetical protein K09858 K09858; SEC-C motif domain protein C 99997 Function unknown D Rpic_0728 Ankyrin K06867 K06867; uncharacterized protein D Rpic_1421 Ankyrin K06867 K06867; uncharacterized protein D Rpic_0606 protein of unknown function DUF477 K06872 K06872; uncharacterized protein D Rpic_1696 protein of unknown function DUF477 K06872 K06872; uncharacterized protein D Rpic_1969 conserved hypothetical protein K06893 K06893; uncharacterized protein D Rpic_3077 protein of unknown function DUF815 K06923 K06923; uncharacterized protein D Rpic_3508 CoA-binding domain protein K06929 K06929; uncharacterized protein D Rpic_0112 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Rpic_1339 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Rpic_0649 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Rpic_3054 conserved hypothetical protein K06950 K06950; uncharacterized protein D Rpic_1316 sodium:dicarboxylate symporter K06956 K06956; uncharacterized protein D Rpic_2093 peptidase S15 K06978 K06978; uncharacterized protein D Rpic_3772 conserved hypothetical protein K06986 K06986; uncharacterized protein D Rpic_3849 Glyoxalase/bleomycin resistance protein/dioxygenase K06991 K06991; uncharacterized protein D Rpic_0321 peptidase C39 bacteriocin processing K06992 K06992; uncharacterized protein D Rpic_3435 peptidase C39 bacteriocin processing K06992 K06992; uncharacterized protein D Rpic_2907 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein D Rpic_3025 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein D Rpic_4325 transporter, putative K07003 K07003; uncharacterized protein D Rpic_0758 Endonuclease/exonuclease/phosphatase K07004 K07004; uncharacterized protein D Rpic_3402 conserved hypothetical protein K07005 K07005; uncharacterized protein D Rpic_3660 pyridoxamine 5'-phosphate oxidase-related FMN-binding K07006 K07006; uncharacterized protein D Rpic_0184 putative transmembrane protein K07018 K07018; uncharacterized protein D Rpic_0484 alpha/beta hydrolase fold K07019 K07019; uncharacterized protein D Rpic_4416 conserved hypothetical protein K07028 K07028; uncharacterized protein D Rpic_3362 FF domain protein K07044 K07044; uncharacterized protein D Rpic_1296 FF domain protein K07044 K07044; uncharacterized protein D Rpic_2771 protein of unknown function zinc metallopeptidase putative K07054 K07054; uncharacterized protein D Rpic_2690 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Rpic_4140 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Rpic_2785 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Rpic_2015 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Rpic_3532 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Rpic_3904 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Rpic_2954 metallophosphoesterase K07098 K07098; uncharacterized protein D Rpic_1071 phosphoribosyltransferase K07101 K07101; uncharacterized protein D Rpic_0688 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein D Rpic_0313 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein D Rpic_0314 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein D Rpic_3554 nuclear protein SET K07117 K07117; uncharacterized protein D Rpic_0100 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Rpic_3725 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Rpic_0257 peptidase S16 lon domain protein K07157 K07157; uncharacterized protein D Rpic_1350 VWA containing CoxE family protein K07161 K07161; uncharacterized protein D Rpic_3758 protein of unknown function DUF37 K08998 K08998; uncharacterized protein D Rpic_3455 Domain of unknown function DUF1791 K09004 K09004; uncharacterized protein D Rpic_2757 protein of unknown function DUF192 K09005 K09005; uncharacterized protein D Rpic_2422 conserved hypothetical protein K09117 K09117; uncharacterized protein D Rpic_4229 protein of unknown function DUF82 K09122 K09122; uncharacterized protein D Rpic_0274 protein of unknown function DUF355 K09129 K09129; uncharacterized protein D Rpic_0182 protein of unknown function DUF493 K09158 K09158; uncharacterized protein D Rpic_1349 carbon monoxide dehydrogenase subunit G K09386 K09386; uncharacterized protein D Rpic_4495 protein of unknown function DUF985 K09705 K09705; uncharacterized protein D Rpic_4187 protein of unknown function DUF333 K09712 K09712; uncharacterized protein D Rpic_2049 protein of unknown function DUF444 K09786 K09786; uncharacterized protein D Rpic_2808 protein of unknown function DUF343 K09791 K09791; uncharacterized protein D Rpic_1112 putative transmembrane protein K09792 K09792; uncharacterized protein D Rpic_1303 protein of unknown function UPF0125 K09801 K09801; uncharacterized protein D Rpic_4558 conserved hypothetical protein K09822 K09822; uncharacterized protein D Rpic_0529 conserved hypothetical protein K09857 K09857; uncharacterized protein D Rpic_2164 protein of unknown function DUF328 K09861 K09861; uncharacterized protein D Rpic_3075 protein of unknown function DUF329 K09862 K09862; uncharacterized protein D Rpic_2563 protein of unknown function DUF482 K09919 K09919; uncharacterized protein D Rpic_3696 protein of unknown function DUF484 K09921 K09921; uncharacterized protein D Rpic_0772 putative signal peptide protein K09924 K09924; uncharacterized protein D Rpic_4291 protein of unknown function DUF692 K09930 K09930; uncharacterized protein D Rpic_3311 protein of unknown function DUF1175 K09934 K09934; uncharacterized protein D Rpic_1068 conserved hypothetical protein K09937 K09937; uncharacterized protein D Rpic_3345 PepSY-associated TM helix domain protein K09939 K09939; uncharacterized protein D Rpic_3336 protein of unknown function DUF1415 K09941 K09941; uncharacterized protein D Rpic_3830 putative periplasmic ligand-binding sensor protein K09945 K09945; uncharacterized protein D Rpic_3527 conserved hypothetical protein K09954 K09954; uncharacterized protein D Rpic_4514 protein of unknown function DUF1348 K09958 K09958; uncharacterized protein D Rpic_4168 conserved hypothetical protein K09965 K09965; uncharacterized protein D Rpic_1498 conserved hypothetical protein K09973 K09973; uncharacterized protein D Rpic_4133 GumN family protein K09973 K09973; uncharacterized protein D Rpic_2794 protein of unknown function DUF886 K09975 K09975; uncharacterized protein D Rpic_0858 conserved hypothetical protein K09983 K09983; uncharacterized protein D Rpic_0862 conserved hypothetical protein K09989 K09989; uncharacterized protein D Rpic_2839 conserved hypothetical protein K09990 K09990; uncharacterized protein D Rpic_1187 protein of unknown function DUF47 K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 27, 2024