+E Ribosome biogenesis KO
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Ribosome Biogenesis - Rubrobacter radiotolerans
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D RradSPS_1390 dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C RradSPS_1513 era: GTP-binding protein Era K03595 era; GTPase
C RradSPS_1530 Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C RradSPS_1288 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C RradSPS_1415 NusA: transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C RradSPS_1463 nusB: transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C RradSPS_1955 nusG: transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D RradSPS_0784 ksgA: dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RradSPS_1378 TIGR00095: RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RradSPS_1520 TIGR00046: RNA methyltransferase, RsmE family K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RradSPS_2768 gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RradSPS_1507 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RradSPS_0782 TIGR00096: putative S-adenosylmethionine-dependent methyltransferase, YraL family K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RradSPS_1461 tly: hemolysin TlyA family protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D RradSPS_1959 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RradSPS_1606 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D RradSPS_0733 putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D RradSPS_2359 TIGR00048: 23S rRNA m2A2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D RradSPS_1461 tly: hemolysin TlyA family protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D RradSPS_1448 TIGR00093: pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RradSPS_1489 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C RradSPS_0688 rimI: ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C RradSPS_1396 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C RradSPS_2399 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
B rRNA processing factors
C RradSPS_1390 dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
C RradSPS_1364 RNAse H domain protein, YqgF family K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
B GTPases
C RradSPS_1513 era: GTP-binding protein Era K03595 era; GTPase
C RradSPS_1444 ribosome-associated GTPase EngA K03977 engA; GTPase
C RradSPS_1530 Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C RradSPS_1435 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C RradSPS_1592 Putative translation factor (SUA5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C RradSPS_1332 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C RradSPS_1418 rbfA: ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C RradSPS_1414 Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C RradSPS_0003 hypothetical protein K14761 rlbA; ribosome-associated protein
C RradSPS_1528 iojap-like ribosome-associated protein K09710 ybeB; ribosome-associated protein
C RradSPS_1516 TIGR00043: probable rRNA maturation factor YbeY K07042 ybeY; probable rRNA maturation factor
C RradSPS_1562 yfiA: ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C RradSPS_1993 TIGR00092: GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C RradSPS_1381 putative metal-binding possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024