+D GENES KO #

  KEGG Orthology (KO) - Rickettsia rickettsii Hauke

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:rrh00010] D RPM_03810 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D RPM_01950 pyruvate dehydrogenase e1 component, alpha subunit precursor K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D RPM_01955 pyruvate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D RPM_03895 branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RPM_04295 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_06795 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00020 Citrate cycle (TCA cycle) [PATH:rrh00020] D RPM_07195 gltA; type II citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RPM_06765 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D RPM_01985 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D RPM_01295 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D RPM_01285 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D RPM_04295 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_06795 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_03335 succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RPM_03340 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RPM_00970 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RPM_00430 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RPM_00960 succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RPM_00965 succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D RPM_05620 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D RPM_02915 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RPM_01950 pyruvate dehydrogenase e1 component, alpha subunit precursor K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D RPM_01955 pyruvate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D RPM_03895 branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway D RPM_02255 ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] C 00040 Pentose and glucuronate interconversions D RPM_06655 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] C 00051 Fructose and mannose metabolism [PATH:rrh00051] D RPM_03700 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D RPM_02255 ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] C 00052 Galactose metabolism D RPM_02565 UDP-2-acetamido-2,6-dideoxy-alpha-D-xylo-4-hexulose 3,5-epimerase K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2] C 00053 Ascorbate and aldarate metabolism D RPM_06655 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] C 00500 Starch and sucrose metabolism [PATH:rrh00500] D RPM_06075 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rrh00520] D RPM_04360 UDP-N-acetylglucosamine pyrophosphorylase K11528 glmU; UDP-N-acetylglucosamine pyrophosphorylase [EC:2.7.7.23] D RPM_04905 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RPM_01870 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RPM_02570 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D RPM_06655 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RPM_02565 UDP-2-acetamido-2,6-dideoxy-alpha-D-xylo-4-hexulose 3,5-epimerase K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2] D RPM_03700 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] C 00620 Pyruvate metabolism [PATH:rrh00620] D RPM_01950 pyruvate dehydrogenase e1 component, alpha subunit precursor K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D RPM_01955 pyruvate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D RPM_03895 branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RPM_04295 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_06795 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_02840 bifunctional malic enzyme oxidoreductase/phosphotransacetylase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D RPM_02915 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RPM_05620 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D RPM_03810 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rrh00630] D RPM_02915 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RPM_07195 gltA; type II citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RPM_06765 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D RPM_00335 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D RPM_05300 acetyl-CoA carboxylase, biotin carboxylase K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3] D RPM_05305 propionyl-CoA carboxylase beta chain precursor K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D RPM_03765 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RPM_06335 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RPM_04295 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_06795 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00640 Propanoate metabolism [PATH:rrh00640] D RPM_04295 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_06795 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_05300 acetyl-CoA carboxylase, biotin carboxylase K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3] D RPM_05305 propionyl-CoA carboxylase beta chain precursor K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D RPM_03340 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RPM_03335 succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00650 Butanoate metabolism [PATH:rrh00650] D RPM_06290 poly-beta-hydroxybutyrate polymerase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D RPM_00335 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D RPM_00970 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RPM_00430 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RPM_00960 succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RPM_00965 succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D RPM_03480 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RPM_05025 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D RPM_05030 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] C 00660 C5-Branched dibasic acid metabolism D RPM_03340 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RPM_03335 succinyl-CoA synthetase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00562 Inositol phosphate metabolism [PATH:rrh00562] D RPM_01815 myo-inositol-1(or 4)-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:rrh00190] D RPM_02725 NADH:ubiquinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D RPM_02720 NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D RPM_02715 NADH dehydrogenase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D RPM_02710 NADH dehydrogenase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D RPM_02705 NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D RPM_00890 NADH dehydrogenase I subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D RPM_06755 NADH dehydrogenase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D RPM_06750 NADH:ubiquinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D RPM_06745 NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D RPM_06720 NADH:ubiquinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D RPM_06725 NADH:ubiquinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D RPM_06730 NADH:ubiquinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D RPM_06735 NADH:ubiquinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D RPM_04425 NADH:ubiquinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D RPM_00970 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RPM_00430 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RPM_00960 succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RPM_00965 succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D RPM_02010 Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D RPM_02015 cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D RPM_02025 cytochrome c1, heme protein precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D RPM_02625 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D RPM_01365 cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D RPM_03100 cytochrome c oxidase polypeptide I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D RPM_03110 cytochrome c oxidase polypeptide II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D RPM_02285 cytochrome C oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D RPM_01920 heme O monooxygenase K02259 COX15; heme a synthase [EC:1.17.99.9] D RPM_01615 cyanide-insensitive cytochrome bd-type quinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D RPM_01620 cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D RPM_01895 cytochrome c K08738 CYC; cytochrome c D RPM_06785 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D RPM_06775 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D RPM_06780 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D RPM_06790 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D RPM_06770 atpC; F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D RPM_00175 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D RPM_00160 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D RPM_00165 F0F1 ATP synthase subunit B' K02109 ATPF0B; F-type H+-transporting ATPase subunit b D RPM_00170 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D RPM_04985 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:rrh00680] D RPM_06335 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RPM_02915 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00910 Nitrogen metabolism [PATH:rrh00910] D RPM_06480 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D RPM_03765 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] C 00920 Sulfur metabolism D RPM_02245 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:rrh00061] D RPM_06525 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D RPM_06220 acyl-carrier-protein S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RPM_06590 3-oxoacyl-(acyl carrier protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RPM_06530 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RPM_06520 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RPM_00040 fabZ; (3R)-hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RPM_02765 enoyl-(acyl carrier protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00062 Fatty acid elongation C 00071 Fatty acid degradation D RPM_05315 acylglycerophosphoethanolamine acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism D RPM_03985 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 00564 Glycerophospholipid metabolism [PATH:rrh00564] D RPM_03445 gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D RPM_03985 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RPM_06980 phospholipase D K17717 pld; phospholipase D [EC:3.1.4.4] D RPM_05315 acylglycerophosphoethanolamine acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D RPM_03295 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D RPM_01830 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D RPM_01825 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D RPM_06410 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D RPM_00465 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] C 00565 Ether lipid metabolism D RPM_06980 phospholipase D K17717 pld; phospholipase D [EC:3.1.4.4] C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids [PATH:rrh01040] D RPM_00385 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:rrh00230] D RPM_01645 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D RPM_03770 putative cytoplasmic protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D RPM_00505 ndk; mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RPM_06555 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D RPM_03655 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RPM_03665 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D RPM_00565 deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 dgt; dGTPase [EC:3.1.5.1] D RPM_02115 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K21138 HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2] D RPM_04930 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K21138 HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2] D RPM_02205 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D RPM_05485 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00240 Pyrimidine metabolism [PATH:rrh00240] D RPM_01115 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D RPM_00505 ndk; mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RPM_06960 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D RPM_02940 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2] D RPM_04180 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D RPM_00600 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D RPM_03655 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RPM_03665 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D RPM_05840 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D RPM_03065 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RPM_02270 thyX; FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:rrh00250] D RPM_00700 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RPM_03480 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RPM_06480 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D RPM_03765 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] C 00260 Glycine, serine and threonine metabolism [PATH:rrh00260] D RPM_06425 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RPM_02400 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RPM_06335 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RPM_07170 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D RPM_04295 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_06795 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_01830 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] C 00270 Cysteine and methionine metabolism [PATH:rrh00270] D RPM_03770 putative cytoplasmic protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D RPM_06425 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RPM_02400 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RPM_03315 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RPM_00700 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RPM_02915 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00280 Valine, leucine and isoleucine degradation [PATH:rrh00280] D RPM_03315 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RPM_04295 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_06795 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_05300 acetyl-CoA carboxylase, biotin carboxylase K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3] D RPM_05305 propionyl-CoA carboxylase beta chain precursor K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D RPM_05025 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D RPM_05030 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rrh00290] D RPM_03315 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00300 Lysine biosynthesis [PATH:rrh00300] D RPM_06425 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RPM_02400 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RPM_03320 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RPM_01075 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D RPM_01380 dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D RPM_07425 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D RPM_03235 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D RPM_05060 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RPM_05055 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:rrh00310] D RPM_01285 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D RPM_04295 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_06795 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_03480 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00220 Arginine biosynthesis [PATH:rrh00220] D RPM_03765 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RPM_06480 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D RPM_00700 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RPM_00800 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] C 00330 Arginine and proline metabolism D RPM_00700 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism C 00350 Tyrosine metabolism [PATH:rrh00350] D RPM_00700 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RPM_03480 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism D RPM_00700 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00380 Tryptophan metabolism D RPM_01285 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D RPM_04295 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_06795 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rrh00400] D RPM_00700 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism C 00430 Taurine and hypotaurine metabolism D RPM_06480 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] C 00440 Phosphonate and phosphinate metabolism D RPM_07390 metal-dependent hydrolase K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:rrh00450] D RPM_03590 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D RPM_03460 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D RPM_05835 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:rrh00460] D RPM_06075 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RPM_06335 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:rrh00470] D RPM_00740 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RPM_01875 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RPM_03130 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RPM_03235 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] C 00480 Glutathione metabolism [PATH:rrh00480] D RPM_01045 multifunctional aminopeptidase A K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D RPM_03815 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RPM_01985 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:rrh00540] D RPM_00035 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D RPM_01905 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D RPM_00045 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D RPM_06185 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D RPM_02460 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D RPM_06105 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D RPM_03725 arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D RPM_00540 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D RPM_02945 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D RPM_00690 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D RPM_06100 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rrh00541] D RPM_02565 UDP-2-acetamido-2,6-dideoxy-alpha-D-xylo-4-hexulose 3,5-epimerase K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2] D RPM_06655 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RPM_02560 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D RPM_03700 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D RPM_02570 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 00550 Peptidoglycan biosynthesis [PATH:rrh00550] D RPM_04905 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RPM_01870 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RPM_01865 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D RPM_03130 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RPM_05060 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RPM_01875 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RPM_05055 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D RPM_03300 undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RPM_05050 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RPM_03140 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D RPM_06830 multimodular transpeptidase-transglycosylase PBP 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RPM_04765 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D RPM_04780 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D RPM_03015 penicillin-binding protein dacF K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:rrh00730] D RPM_04095 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RPM_04100 cysteine desulfhydrase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RPM_05485 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism D RPM_04460 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism C 00760 Nicotinate and nicotinamide metabolism [PATH:rrh00760] D RPM_03435 ppnK; inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D RPM_07315 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D RPM_07320 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D RPM_00625 NAD(p) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D RPM_03480 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:rrh00770] D RPM_06190 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D RPM_04895 acpS; 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D RPM_03315 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00780 Biotin metabolism [PATH:rrh00780] D RPM_06530 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RPM_06520 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RPM_00040 fabZ; (3R)-hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RPM_02765 enoyl-(acyl carrier protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D RPM_03860 biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:rrh00785] D RPM_07475 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D RPM_06330 lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D RPM_04295 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_06795 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_01950 pyruvate dehydrogenase e1 component, alpha subunit precursor K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D RPM_01955 pyruvate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D RPM_03895 branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RPM_01295 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D RPM_01285 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] C 00790 Folate biosynthesis [PATH:rrh00790] D RPM_02965 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D RPM_00225 folate synthesis bifunctional protein K13941 folKP; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase [EC:2.7.6.3 2.5.1.15] D RPM_00215 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D RPM_03830 folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D RPM_01280 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D RPM_05170 organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D RPM_05975 queuosine biosynthesis protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D RPM_00615 queF; 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] C 00670 One carbon pool by folate [PATH:rrh00670] D RPM_00215 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D RPM_03585 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D RPM_06335 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RPM_01565 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D RPM_02270 thyX; FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D RPM_04290 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:rrh00860] D RPM_07170 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D RPM_02505 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RPM_05335 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RPM_04435 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D RPM_04230 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D RPM_07550 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D RPM_07525 coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D RPM_07540 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D RPM_07545 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D RPM_02625 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D RPM_01920 heme O monooxygenase K02259 COX15; heme a synthase [EC:1.17.99.9] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rrh00130] D RPM_05850 ubiA; 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D RPM_06995 3-polyprenyl-4-hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D RPM_04460 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D RPM_05330 bifunctional 3-demethylubiquinone-9 3-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D RPM_04740 2-octaprenyl-6-methoxyphenyl hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D RPM_05755 ubiE; ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D RPM_01355 ubiquinone biosynthesis protein coq7 K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:rrh00900] D RPM_04460 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D RPM_04165 isopentenyl pyrophosphate isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D RPM_04060 decaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D RPM_03300 undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis D RPM_02560 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:rrh00946] D RPM_06075 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:rrh00261] D RPM_06425 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RPM_02400 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RPM_03320 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RPM_01075 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:rrh00521] D RPM_01815 myo-inositol-1(or 4)-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D RPM_02560 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis D RPM_00700 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis D RPM_06220 acyl-carrier-protein S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RPM_06520 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RPM_02765 enoyl-(acyl carrier protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D RPM_06525 acpP; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D RPM_06075 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D RPM_03050 protocatechuate-3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00627 Aminobenzoate degradation D RPM_04460 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation D RPM_03050 protocatechuate-3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:rrh03020] D RPM_01025 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RPM_01030 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RPM_05470 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RPM_04900 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:rrh03010] D RPM_04175 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D RPM_00670 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D RPM_05560 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D RPM_02620 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D RPM_05505 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D RPM_00395 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D RPM_00985 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D RPM_05520 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D RPM_01770 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D RPM_05595 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D RPM_05475 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D RPM_00980 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D RPM_05480 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D RPM_05525 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D RPM_03735 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D RPM_07485 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D RPM_05545 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D RPM_00400 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D RPM_05570 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D RPM_05460 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D RPM_05255 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D RPM_01010 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D RPM_05575 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D RPM_05590 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D RPM_05585 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D RPM_05530 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D RPM_05515 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D RPM_01020 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D RPM_00405 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D RPM_01015 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D RPM_01005 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D RPM_01765 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D RPM_05540 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D RPM_05495 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D RPM_05555 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D RPM_05465 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D RPM_05510 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D RPM_00875 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D RPM_05180 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D RPM_06415 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D RPM_05565 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D RPM_05580 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D RPM_05535 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D RPM_05165 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D RPM_06420 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D RPM_00785 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D RPM_05550 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D RPM_05500 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D RPM_00790 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D RPM_06595 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D RPM_07490 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D RPM_05185 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D RPM_05175 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D RPM_04350 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D RPM_r07627 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RPM_r07629 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RPM_r07625 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:rrh00970] D RPM_t07589 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RPM_t07597 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RPM_t07583 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RPM_t07595 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RPM_t07619 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RPM_t07571 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RPM_t07579 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RPM_t07573 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D RPM_t07585 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RPM_t07587 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RPM_t07559 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RPM_t07601 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RPM_t07605 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RPM_t07611 tRNA-His K14226 tRNA-His; tRNA His D RPM_t07577 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D RPM_t07599 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RPM_t07621 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RPM_t07609 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RPM_t07575 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RPM_t07615 tRNA-Met K14230 tRNA-Met; tRNA Met D RPM_t07569 tRNA-Met K14230 tRNA-Met; tRNA Met D RPM_t07563 tRNA-Met K14230 tRNA-Met; tRNA Met D RPM_t07557 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D RPM_t07617 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D RPM_t07581 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RPM_t07593 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RPM_t07613 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RPM_t07623 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RPM_t07561 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RPM_t07567 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RPM_t07565 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D RPM_t07607 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D RPM_t07591 tRNA-Val K14237 tRNA-Val; tRNA Val D RPM_t07603 tRNA-Val K14237 tRNA-Val; tRNA Val D RPM_02505 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RPM_05335 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RPM_01095 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RPM_01090 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D RPM_01100 gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D RPM_07285 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RPM_01060 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RPM_07240 glyQ; glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D RPM_07235 glyS; glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D RPM_01655 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RPM_06675 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RPM_00665 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RPM_05835 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RPM_01565 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D RPM_05875 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RPM_03275 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RPM_05275 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RPM_02830 lysK; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D RPM_00570 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RPM_02970 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RPM_02310 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RPM_03245 pheS; phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RPM_03250 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RPM_04575 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RPM_03980 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:rrh03060] D RPM_05490 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RPM_00995 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RPM_00655 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RPM_04970 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RPM_00885 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RPM_04965 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RPM_00460 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RPM_04885 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RPM_00605 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D RPM_01210 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RPM_06605 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RPM_06405 tatA; twin arginine translocase protein A K03116 tatA; sec-independent protein translocase protein TatA D RPM_06670 Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC D RPM_00895 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RPM_03120 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:rrh04122] D RPM_04095 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RPM_04100 cysteine desulfhydrase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RPM_02295 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] C 03050 Proteasome C 03018 RNA degradation [PATH:rrh03018] D RPM_01800 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D RPM_01915 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D RPM_03730 polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D RPM_05660 ATP-dependent RNA helicase RhlE K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RPM_03915 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D RPM_03440 metal-dependent hydrolase K12574 rnj; ribonuclease J [EC:3.1.-.-] D RPM_01325 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RPM_05350 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RPM_00105 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:rrh03030] D RPM_06195 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RPM_06650 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RPM_07330 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RPM_01205 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RPM_01350 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RPM_07415 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RPM_03255 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RPM_04470 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D RPM_07300 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RPM_07135 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RPM_06175 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RPM_01480 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RPM_06120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:rrh03410] D RPM_06350 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RPM_02685 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D RPM_05760 formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D RPM_07205 uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D RPM_01945 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RPM_05700 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RPM_03905 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RPM_06120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:rrh03420] D RPM_05065 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D RPM_07130 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D RPM_01485 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D RPM_04810 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D RPM_03500 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RPM_06120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:rrh03430] D RPM_02250 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D RPM_07495 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D RPM_03500 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RPM_05685 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D RPM_02660 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D RPM_03905 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RPM_07135 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RPM_06650 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RPM_03255 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RPM_07330 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RPM_01350 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RPM_01205 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RPM_06195 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RPM_07415 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RPM_06120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:rrh03440] D RPM_03905 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RPM_07135 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RPM_00205 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF D RPM_04520 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D RPM_03405 recR; recombination protein RecR K06187 recR; recombination protein RecR D RPM_06515 recA; recombinase A K03553 recA; recombination protein RecA D RPM_02985 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D RPM_03000 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RPM_00910 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D RPM_05005 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RPM_06650 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RPM_03255 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RPM_07330 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RPM_01350 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RPM_01205 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RPM_06195 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RPM_07415 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RPM_04455 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:rrh02010] D RPM_00720 toluene transport system protein K07323 mlaC; phospholipid transport system substrate-binding protein D RPM_06165 ABC transporter substrate binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RPM_00745 ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D RPM_00750 ribonucleotide ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D RPM_00100 zinc/manganese ABC transporter substrate binding protein K09815 znuA; zinc transport system substrate-binding protein D RPM_05325 high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein D RPM_07095 high-affinity zinc uptake system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D RPM_03825 BioY family protein K03523 bioY; biotin transport system substrate-specific component D RPM_00020 O-antigen export system permease K09690 wzm; homopolymeric O-antigen transport system permease protein D RPM_00015 O-antigen export system ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D RPM_06005 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D RPM_06010 lipoprotein releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D RPM_07070 heme chaperone heme-lyase K02195 ccmC; heme exporter protein C D RPM_02000 heme exporter protein B K02194 ccmB; heme exporter protein B D RPM_06740 cytochrome c biogenesis protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D RPM_07410 hypothetical protein K07091 lptF; lipopolysaccharide export system permease protein D RPM_06575 hypothetical protein K11720 lptG; lipopolysaccharide export system permease protein D RPM_03710 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D RPM_03005 phospholipid-lipopolysaccharide ABC transporter K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D RPM_02395 type I protein secretion ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:rrh03070] D RPM_01715 outer membrane protein tolC precursor K12340 tolC; outer membrane protein D RPM_04970 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RPM_00885 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RPM_00995 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RPM_00655 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RPM_05490 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RPM_04965 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RPM_00460 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RPM_04885 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RPM_06605 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RPM_00605 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D RPM_01210 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RPM_06405 tatA; twin arginine translocase protein A K03116 tatA; sec-independent protein translocase protein TatA D RPM_06670 Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC D RPM_00805 type IV secretion system protein VirB3 K03198 virB3; type IV secretion system protein VirB3 D RPM_02165 channel protein K03204 virB9; type IV secretion system protein VirB9 D RPM_02185 channel protein K03204 virB9; type IV secretion system protein VirB9 D RPM_00815 channel protein K03201 virB6; type IV secretion system protein VirB6 D RPM_00820 channel protein K03201 virB6; type IV secretion system protein VirB6 D RPM_00825 channel protein K03201 virB6; type IV secretion system protein VirB6 D RPM_00830 channel protein K03201 virB6; type IV secretion system protein VirB6 D RPM_00835 channel protein K03201 virB6; type IV secretion system protein VirB6 D RPM_02170 channel protein K03203 virB8; type IV secretion system protein VirB8 D RPM_02180 channel protein K03203 virB8; type IV secretion system protein VirB8 D RPM_02190 channel protein K03195 virB10; type IV secretion system protein VirB10 D RPM_06685 VirB4 ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D RPM_00810 type IV secretion system ATPase VirB4 K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D RPM_02195 type IV secretion system ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D RPM_02200 type IV secretion system component VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] B B 09132 Signal transduction C 02020 Two-component system [PATH:rrh02020] D RPM_03305 osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D RPM_03310 transcriptional regulatory protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D RPM_00950 endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D RPM_01920 heme O monooxygenase K02259 COX15; heme a synthase [EC:1.17.99.9] D RPM_05080 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D RPM_03600 protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D RPM_03640 protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D RPM_03765 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RPM_05245 nitrogen regulation protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D RPM_04750 nitrogen assimilation regulatory protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D RPM_01745 sensory transduction protein kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D RPM_01805 pleD; response regulator PleD K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D RPM_00610 cell cycle transcriptional regulator K13584 ctrA; two-component system, cell cycle response regulator CtrA D RPM_02010 Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D RPM_02015 cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D RPM_02025 cytochrome c1, heme protein precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D RPM_01895 cytochrome c K08738 CYC; cytochrome c D RPM_01615 cyanide-insensitive cytochrome bd-type quinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D RPM_01620 cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D RPM_01715 outer membrane protein tolC precursor K12340 tolC; outer membrane protein D RPM_02570 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D RPM_02010 Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:rrh02024] D RPM_00460 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RPM_00995 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RPM_00655 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RPM_05490 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RPM_04965 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RPM_04885 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RPM_06605 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RPM_00605 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D RPM_01210 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly D RPM_07295 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:rrh01501] D RPM_04035 AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D RPM_03010 AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D RPM_01715 outer membrane protein tolC precursor K12340 tolC; outer membrane protein D RPM_06830 multimodular transpeptidase-transglycosylase PBP 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RPM_04765 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D RPM_04780 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:rrh01502] D RPM_01875 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RPM_00740 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RPM_05055 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D RPM_05050 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RPM_03140 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rrh01503] D RPM_00950 endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D RPM_01715 outer membrane protein tolC precursor K12340 tolC; outer membrane protein D RPM_00035 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:rrh01000] C 01001 Protein kinases [BR:rrh01001] D RPM_03305 osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D RPM_05245 nitrogen regulation protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D RPM_01745 sensory transduction protein kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:rrh01009] D RPM_07165 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG C 01002 Peptidases and inhibitors [BR:rrh01002] D RPM_03120 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D RPM_03095 putative glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase D RPM_01045 multifunctional aminopeptidase A K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D RPM_07425 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D RPM_07030 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D RPM_04065 aminopeptidase P K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D RPM_01300 thermostable carboxypeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D RPM_00415 cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D RPM_01150 M50 family membrane endopeptidase K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D RPM_00950 endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D RPM_02130 protease II K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D RPM_03015 penicillin-binding protein dacF K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RPM_04170 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D RPM_03530 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D RPM_00895 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RPM_01740 carboxy-terminal processing protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D RPM_03920 signal peptide peptidase K04773 sppA; protease IV [EC:3.4.21.-] D RPM_03080 muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D RPM_02420 ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D RPM_05645 ecotin K08276 eco; ecotin D RPM_00945 protease activity modulator K04087 hflC; modulator of FtsH protease HflC D RPM_00940 protease activity modulator K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:rrh01003] D RPM_06830 multimodular transpeptidase-transglycosylase PBP 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] C 01005 Lipopolysaccharide biosynthesis proteins [BR:rrh01005] D RPM_00035 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D RPM_02460 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D RPM_01905 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D RPM_00045 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D RPM_06185 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D RPM_06105 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D RPM_06100 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D RPM_00690 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D RPM_00540 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D RPM_02945 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D RPM_03725 arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rrh01011] D RPM_04905 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RPM_01870 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RPM_01865 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D RPM_03130 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RPM_05060 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RPM_01875 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RPM_00740 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RPM_03080 muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D RPM_05050 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RPM_03140 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D RPM_04990 virulence factor K03980 murJ; putative peptidoglycan lipid II flippase D RPM_06830 multimodular transpeptidase-transglycosylase PBP 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RPM_04765 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D RPM_04780 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D RPM_03015 penicillin-binding protein dacF K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RPM_03070 soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D RPM_02470 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D RPM_03020 rare lipoprotein A precursor K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D RPM_07480 N-acetylmuramoyl-L-alanine amidase K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:rrh01004] D RPM_06220 acyl-carrier-protein S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RPM_06590 3-oxoacyl-(acyl carrier protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RPM_06530 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RPM_06520 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RPM_00040 fabZ; (3R)-hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RPM_02765 enoyl-(acyl carrier protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D RPM_00385 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D RPM_03985 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:rrh01006] D RPM_04060 decaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D RPM_03300 undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RPM_03690 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D RPM_05850 ubiA; 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D RPM_02625 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:rrh01007] D RPM_02830 lysK; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D RPM_02505 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RPM_05335 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RPM_04575 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RPM_03980 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RPM_00665 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RPM_00570 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RPM_05835 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RPM_05275 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RPM_05875 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RPM_03275 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RPM_01060 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RPM_02310 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RPM_07240 glyQ; glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D RPM_07235 glyS; glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D RPM_06675 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RPM_02970 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RPM_01655 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RPM_07285 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RPM_03245 pheS; phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RPM_03250 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RPM_00700 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RPM_07170 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D RPM_03315 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:rrh00194] D RPM_06770 atpC; F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D RPM_06775 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D RPM_06780 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D RPM_06785 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D RPM_06790 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D RPM_00160 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D RPM_00165 F0F1 ATP synthase subunit B' K02109 ATPF0B; F-type H+-transporting ATPase subunit b D RPM_00170 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D RPM_00175 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D RPM_00180 hypothetical protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:rrh03000] D RPM_04105 Rrf2 family protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D RPM_04565 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D RPM_03860 biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D RPM_06715 transcriptional repressor K07726 K07726; putative transcriptional regulator D RPM_04955 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB D RPM_01855 BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D RPM_00525 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RPM_00190 transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D RPM_00270 hypothetical protein K07735 algH; putative transcriptional regulator D RPM_06965 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D RPM_04795 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:rrh03021] D RPM_05470 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RPM_01025 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RPM_01030 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RPM_04900 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D RPM_07295 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D RPM_02280 RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor D RPM_04545 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D RPM_01155 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB D RPM_01000 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D RPM_06965 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D RPM_07310 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D RPM_03915 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:rrh03019] D RPM_01915 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D RPM_00900 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RPM_03440 metal-dependent hydrolase K12574 rnj; ribonuclease J [EC:3.1.-.-] D RPM_05660 ATP-dependent RNA helicase RhlE K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RPM_03730 polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D RPM_03915 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D RPM_01325 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RPM_05350 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RPM_00105 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D RPM_01800 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] C 03041 Spliceosome C 03011 Ribosome [BR:rrh03011] D RPM_04175 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D RPM_00670 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D RPM_05560 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D RPM_02620 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D RPM_05505 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D RPM_00395 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D RPM_00985 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D RPM_05520 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D RPM_01770 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D RPM_05595 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D RPM_05475 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D RPM_00980 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D RPM_05480 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D RPM_05525 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D RPM_03735 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D RPM_07485 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D RPM_05545 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D RPM_00400 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D RPM_05570 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D RPM_05460 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D RPM_05255 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D RPM_01010 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D RPM_05575 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D RPM_05590 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D RPM_05585 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D RPM_05530 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D RPM_05515 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D RPM_00405 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D RPM_01015 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D RPM_01005 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D RPM_01020 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D RPM_01765 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D RPM_05540 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D RPM_05495 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D RPM_05555 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D RPM_05465 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D RPM_05510 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D RPM_00875 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D RPM_05180 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D RPM_06415 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D RPM_05565 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D RPM_05580 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D RPM_05535 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D RPM_06420 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D RPM_00785 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D RPM_05550 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D RPM_05500 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D RPM_00790 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D RPM_06595 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D RPM_07490 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D RPM_05185 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D RPM_05175 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D RPM_04350 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D RPM_05165 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D RPM_r07625 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RPM_r07627 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RPM_r07629 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:rrh03009] D RPM_00900 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RPM_00905 era; GTPase Era K03595 era; GTPase D RPM_07190 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D RPM_06965 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D RPM_04545 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D RPM_01155 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB D RPM_01000 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D RPM_05670 ksgA; 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D RPM_04505 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D RPM_01185 16S ribosomal RNA methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D RPM_00515 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D RPM_04790 16S rRNA m(4)C1402 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D RPM_06395 tetrapyrrole (corrin/porphyrin) methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D RPM_04570 hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D RPM_05610 tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D RPM_01160 23S rRNA Um2552 2'-O-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D RPM_06115 protein involved in external DNA uptake K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D RPM_04495 ribosomal large subunit pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D RPM_01925 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D RPM_07210 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D RPM_02650 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D RPM_01915 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D RPM_02545 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D RPM_05660 ATP-dependent RNA helicase RhlE K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RPM_05710 GTP-binding protein Der K03977 engA; GTPase D RPM_07230 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RPM_03390 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D RPM_04550 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP D RPM_06885 iojap family protein K09710 ybeB; ribosome-associated protein D RPM_06315 metal-binding heat shock protein K07042 ybeY; probable rRNA maturation factor D RPM_05145 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:rrh03016] D RPM_02505 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RPM_05335 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RPM_02970 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RPM_05275 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RPM_03275 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RPM_05835 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RPM_00570 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RPM_01060 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RPM_07285 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RPM_01655 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RPM_06675 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RPM_00665 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RPM_05875 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RPM_02310 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RPM_03245 pheS; phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RPM_03250 pheT; phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RPM_04575 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RPM_03980 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RPM_02405 protein kinase C inhibitor 1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D RPM_07290 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D RPM_03740 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D RPM_04095 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RPM_04100 cysteine desulfhydrase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RPM_07230 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RPM_03690 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D RPM_06485 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D RPM_00510 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D RPM_02245 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D RPM_05190 rnpA; ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D RPM_05400 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D RPM_04280 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D RPM_03285 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D RPM_00530 putative ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA D RPM_02830 lysK; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D RPM_07240 glyQ; glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D RPM_07235 glyS; glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D RPM_07075 cytosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D RPM_00080 tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D RPM_06835 (dimethylallyl)adenosine tRNA methylthiotransferase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D RPM_03240 tRNA 2-methylthioadenosine synthase-like protein K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D RPM_00915 tRNA/rRNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D RPM_00870 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D RPM_02295 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D RPM_04085 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein D RPM_04270 aminomethyltransferase family protein K06980 ygfZ; tRNA-modifying protein YgfZ D RPM_01585 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D RPM_05975 queuosine biosynthesis protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D RPM_01280 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D RPM_05170 organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D RPM_00615 queF; 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D RPM_07255 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6] D RPM_06130 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D RPM_00410 tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D RPM_04530 glycoprotease family protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D RPM_00380 UGMP family protein K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D RPM_00095 ATP/GTP hydrolase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D RPM_03730 polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:rrh03012] D RPM_04540 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D RPM_03890 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D RPM_00675 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D RPM_05605 elongation factor Tu K02358 tuf; elongation factor Tu D RPM_00990 elongation factor G K02355 fusA; elongation factor G D RPM_03900 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D RPM_01110 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D RPM_07225 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D RPM_05160 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D RPM_06955 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D RPM_01810 elongation factor P K02356 efp; elongation factor P D RPM_02055 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:rrh03110] D RPM_00370 ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D RPM_05965 clpX; ATP-dependent protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D RPM_02425 hslU; ATP-dependent protease ATP-binding subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D RPM_07165 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG D RPM_01325 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RPM_01470 hscA; chaperone protein HscA K04044 hscA; molecular chaperone HscA D RPM_05350 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RPM_01320 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D RPM_01475 hscB; co-chaperone HscB K04082 hscB; molecular chaperone HscB D RPM_05405 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE D RPM_05355 groES; co-chaperonin GroES K04078 groES; chaperonin GroES D RPM_00950 endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D RPM_00415 cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D RPM_00175 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D RPM_00605 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D RPM_04815 copper(I)-binding protein K09796 pccA; periplasmic copper chaperone A D RPM_00010 thioredoxin K03671 TXN; thioredoxin D RPM_01490 glutaredoxin 3 K03676 grxC; glutaredoxin 3 D RPM_06345 glutaredoxin K07390 grxD; monothiol glutaredoxin C 04131 Membrane trafficking [BR:rrh04131] D RPM_00505 ndk; mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RPM_07165 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system C 03051 Proteasome [BR:rrh03051] D RPM_07165 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:rrh03032] D RPM_06175 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RPM_01200 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D RPM_06085 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D RPM_03925 integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta D RPM_05080 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D RPM_04470 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D RPM_07300 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RPM_07135 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RPM_06650 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RPM_03255 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RPM_07415 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RPM_01350 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RPM_01205 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RPM_06195 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RPM_07330 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RPM_01480 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RPM_06120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RPM_01520 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RPM_04910 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RPM_00580 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D RPM_01735 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D RPM_02510 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:rrh03036] D RPM_00900 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RPM_01200 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D RPM_06085 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D RPM_03925 integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta D RPM_05080 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D RPM_06800 ferroxidase K04047 dps; starvation-inducible DNA-binding protein D RPM_01885 cell division protein FtsA K03590 ftsA; cell division protein FtsA D RPM_04780 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D RPM_07020 cell division protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D RPM_04785 cell division protein FtsL K03586 ftsL; cell division protein FtsL D RPM_01880 cell division protein ftsQ K03589 ftsQ; cell division protein FtsQ D RPM_03135 cell division protein FtsW K03588 ftsW; cell division protein FtsW D RPM_05635 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RPM_01580 ATPase K06916 zapE; cell division protein ZapE D RPM_06570 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D RPM_06565 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D RPM_02125 rod shape-determining protein rodA K05837 rodA; rod shape determining protein RodA D RPM_01050 chromosome partitioning ATPase K03496 parA; chromosome partitioning protein D RPM_00520 chromosome partitioning protein K03496 parA; chromosome partitioning protein D RPM_00525 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RPM_00580 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D RPM_01735 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D RPM_00510 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D RPM_00515 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D RPM_06970 xerC; site-specific tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D RPM_02750 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D RPM_00935 iron-sulfur cluster assembly/repair protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D RPM_02975 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D RPM_00795 engB; GTP-binding protein YsxC K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:rrh03400] D RPM_04845 ADA regulatory protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RPM_02685 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D RPM_06350 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RPM_03065 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RPM_07205 uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D RPM_05760 formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D RPM_01945 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RPM_05700 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RPM_03905 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RPM_06120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RPM_07130 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D RPM_01485 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D RPM_04810 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D RPM_03500 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RPM_01025 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RPM_01030 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RPM_05470 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RPM_04900 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D RPM_05065 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D RPM_02250 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D RPM_07495 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D RPM_05685 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D RPM_02660 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D RPM_06650 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RPM_03255 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RPM_07415 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RPM_01350 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RPM_01205 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RPM_06195 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RPM_07330 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RPM_07135 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RPM_06515 recA; recombinase A K03553 recA; recombination protein RecA D RPM_02985 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D RPM_03000 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RPM_00910 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D RPM_04455 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RPM_04510 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D RPM_00205 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF D RPM_05005 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RPM_04520 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D RPM_03405 recR; recombination protein RecR K06187 recR; recombination protein RecR D RPM_01305 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D RPM_06205 ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D RPM_03085 ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D RPM_01520 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RPM_04910 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RPM_02510 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D RPM_01200 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D RPM_06085 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D RPM_03925 integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta D RPM_03655 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RPM_03665 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:rrh03029] D RPM_02015 cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D RPM_04540 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D RPM_03890 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D RPM_00675 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D RPM_05605 elongation factor Tu K02358 tuf; elongation factor Tu D RPM_00990 elongation factor G K02355 fusA; elongation factor G D RPM_00905 era; GTPase Era K03595 era; GTPase D RPM_04575 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RPM_03275 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RPM_01060 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RPM_00570 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RPM_01095 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RPM_01090 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D RPM_01100 gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D RPM_07135 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RPM_01145 outer membrane protein omp1 K07277 SAM50; outer membrane protein insertion porin family D RPM_01325 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RPM_05405 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE D RPM_05350 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RPM_05355 groES; co-chaperonin GroES K04078 groES; chaperonin GroES D RPM_01320 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D RPM_04095 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RPM_04100 cysteine desulfhydrase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RPM_04090 scaffold protein K22068 ISCU; iron-sulfur cluster assembly enzyme ISCU, mitochondrial D RPM_01475 hscB; co-chaperone HscB K04082 hscB; molecular chaperone HscB D RPM_06345 glutaredoxin K07390 grxD; monothiol glutaredoxin D RPM_00440 hypothetical protein K18164 NDUFAF7; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7 D RPM_00935 iron-sulfur cluster assembly/repair protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D RPM_02625 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D RPM_02285 cytochrome C oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D RPM_01920 heme O monooxygenase K02259 COX15; heme a synthase [EC:1.17.99.9] D RPM_00460 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RPM_06200 cytochrome c oxidase assembly protein Surf1 K14998 SURF1; surfeit locus 1 family protein D RPM_00265 cytochrome c oxidase Cu(A) center assembly protein K07152 SCO1; protein SCO1 D RPM_04975 Sco2 protein precursor K07152 SCO1; protein SCO1 D RPM_07165 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:rrh02000] D RPM_03005 phospholipid-lipopolysaccharide ABC transporter K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D RPM_05990 hypothetical protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RPM_01605 multidrug ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RPM_01505 multidrug resistance ABC transporter ATP-binding and permease K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RPM_02395 type I protein secretion ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D RPM_06535 ABC transporter ATP-binding protein uup K15738 uup; ABC transport system ATP-binding/permease protein D RPM_06165 ABC transporter substrate binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RPM_00745 ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D RPM_00750 ribonucleotide ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D RPM_00720 toluene transport system protein K07323 mlaC; phospholipid transport system substrate-binding protein D RPM_02785 ABC-type transport system, periplasmic component K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D RPM_02790 ABC transporter permease protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein D RPM_02795 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D RPM_01085 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RPM_00975 hypothetical protein K02029 ABC.PA.P; polar amino acid transport system permease protein D RPM_07385 glutamine ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D RPM_00100 zinc/manganese ABC transporter substrate binding protein K09815 znuA; zinc transport system substrate-binding protein D RPM_05325 high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein D RPM_07095 high-affinity zinc uptake system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D RPM_03825 BioY family protein K03523 bioY; biotin transport system substrate-specific component D RPM_00020 O-antigen export system permease K09690 wzm; homopolymeric O-antigen transport system permease protein D RPM_00015 O-antigen export system ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D RPM_07410 hypothetical protein K07091 lptF; lipopolysaccharide export system permease protein D RPM_06575 hypothetical protein K11720 lptG; lipopolysaccharide export system permease protein D RPM_03710 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D RPM_06005 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D RPM_06010 lipoprotein releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D RPM_07070 heme chaperone heme-lyase K02195 ccmC; heme exporter protein C D RPM_02000 heme exporter protein B K02194 ccmB; heme exporter protein B D RPM_06740 cytochrome c biogenesis protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D RPM_07520 proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D RPM_02865 proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D RPM_00500 regulatory protein K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter D RPM_04035 AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D RPM_03010 AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D RPM_06000 Bcr family multidrug resistance transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D RPM_01125 multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D RPM_03815 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RPM_00455 mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel D RPM_04920 magnesium transporter K06213 mgtE; magnesium transporter D RPM_02360 TolQ K03562 tolQ; biopolymer transport protein TolQ D RPM_02365 TolR K03560 tolR; biopolymer transport protein TolR D RPM_05215 magnesium/nickel/cobalt transporter CorA K03284 corA; magnesium transporter D RPM_06020 magnesium and cobalt efflux protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RPM_01715 outer membrane protein tolC precursor K12340 tolC; outer membrane protein D RPM_01145 outer membrane protein omp1 K07277 SAM50; outer membrane protein insertion porin family D RPM_01310 ComL family lipoprotein K05807 bamD; outer membrane protein assembly factor BamD D RPM_03715 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA D RPM_03720 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC D RPM_05680 organic solvent tolerance protein K04744 lptD; LPS-assembly protein D RPM_06310 hemolysin K06189 corC; hemolysin (HlyC) family protein D RPM_07080 CzcD K13283 fieF; ferrous-iron efflux pump FieF D RPM_00635 transporter, drug/metabolite exporter family protein K15270 sam; S-adenosylmethionine uptake transporter D RPM_07465 Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D RPM_06880 glutathione-regulated potassium-efflux system protein K03455 KEA1_2_3; K+:H+ antiporter D RPM_01995 putative monovalent cation/H+ antiporter subunit B K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D RPM_02160 putative monovalent cation/H+ antiporter subunit C K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D RPM_02135 putative monovalent cation/H+ antiporter subunit D K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D RPM_02150 putative monovalent cation/H+ antiporter subunit D K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D RPM_02155 putative monovalent cation/H+ antiporter subunit D K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D RPM_01120 putative monovalent cation/H+ antiporter subunit E K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D RPM_04745 putative monovalent cation/H+ antiporter subunit F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D RPM_01990 putative monovalent cation/H+ antiporter subunit G K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D RPM_04990 virulence factor K03980 murJ; putative peptidoglycan lipid II flippase D RPM_02835 transporter K13936 mdcF; malonate transporter and related proteins D RPM_03450 auxin efflux carrier family protein K24180 mleP; malate permease and related proteins D RPM_04025 LysE family transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO D RPM_03135 cell division protein FtsW K03588 ftsW; cell division protein FtsW D RPM_03035 high-affinity iron permease K07243 FTR; high-affinity iron transporter D RPM_05705 hypothetical protein K15383 K15383; MtN3 and saliva related transmembrane protein D RPM_06580 peptidoglycan-associated lipoprotein precursor K03640 pal; peptidoglycan-associated lipoprotein D RPM_02275 tolB; translocation protein TolB K03641 tolB; TolB protein D RPM_01835 multidrug resistance protein A K03543 emrA; membrane fusion protein, multidrug efflux system D RPM_02390 HlyD family type I secretion adaptor protein K12537 hasE; membrane fusion protein, type I secretion system D RPM_06380 entericidin B-like protein K16348 ecnB; entericidin B D RPM_06025 heme chaperone--apocytochrome heme-lyase K02198 ccmF; cytochrome c-type biogenesis protein CcmF C 02044 Secretion system [BR:rrh02044] D RPM_01715 outer membrane protein tolC precursor K12340 tolC; outer membrane protein D RPM_02395 type I protein secretion ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D RPM_02390 HlyD family type I secretion adaptor protein K12537 hasE; membrane fusion protein, type I secretion system D RPM_00805 type IV secretion system protein VirB3 K03198 virB3; type IV secretion system protein VirB3 D RPM_06685 VirB4 ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D RPM_00810 type IV secretion system ATPase VirB4 K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D RPM_00815 channel protein K03201 virB6; type IV secretion system protein VirB6 D RPM_00820 channel protein K03201 virB6; type IV secretion system protein VirB6 D RPM_00825 channel protein K03201 virB6; type IV secretion system protein VirB6 D RPM_00830 channel protein K03201 virB6; type IV secretion system protein VirB6 D RPM_00835 channel protein K03201 virB6; type IV secretion system protein VirB6 D RPM_02170 channel protein K03203 virB8; type IV secretion system protein VirB8 D RPM_02180 channel protein K03203 virB8; type IV secretion system protein VirB8 D RPM_02165 channel protein K03204 virB9; type IV secretion system protein VirB9 D RPM_02185 channel protein K03204 virB9; type IV secretion system protein VirB9 D RPM_02190 channel protein K03195 virB10; type IV secretion system protein VirB10 D RPM_02195 type IV secretion system ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D RPM_02200 type IV secretion system component VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D RPM_03600 protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D RPM_03640 protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D RPM_04885 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RPM_00605 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D RPM_04970 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RPM_00995 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RPM_00885 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RPM_00655 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RPM_05490 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RPM_01210 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RPM_06605 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RPM_04965 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RPM_00460 membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RPM_06405 tatA; twin arginine translocase protein A K03116 tatA; sec-independent protein translocase protein TatA D RPM_06670 Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:rrh02042] D RPM_06020 magnesium and cobalt efflux protein K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:rrh02022] D RPM_03305 osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D RPM_03310 transcriptional regulatory protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D RPM_05245 nitrogen regulation protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D RPM_04750 nitrogen assimilation regulatory protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D RPM_01745 sensory transduction protein kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D RPM_01805 pleD; response regulator PleD K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D RPM_00610 cell cycle transcriptional regulator K13584 ctrA; two-component system, cell cycle response regulator CtrA C 02035 Bacterial motility proteins [BR:rrh02035] D RPM_03600 protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D RPM_03640 protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:rrh04812] D RPM_06570 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D RPM_05635 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RPM_01885 cell division protein FtsA K03590 ftsA; cell division protein FtsA D RPM_01050 chromosome partitioning ATPase K03496 parA; chromosome partitioning protein D RPM_00520 chromosome partitioning protein K03496 parA; chromosome partitioning protein D RPM_00525 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:rrh04147] D RPM_07165 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG D RPM_02525 thioredoxin peroxidase 1 K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D RPM_05350 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RPM_01325 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RPM_05605 elongation factor Tu K02358 tuf; elongation factor Tu D RPM_02405 protein kinase C inhibitor 1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D RPM_05485 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D RPM_03765 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RPM_04435 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D RPM_04295 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RPM_06795 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 02048 Prokaryotic defense system [BR:rrh02048] D RPM_00030 PEMK-like protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D RPM_04955 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB D RPM_07380 RelB K18923 stbD; antitoxin StbD D RPM_07405 DNA damage inducible protein K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-] D RPM_07400 DNA-damage-inducible protein J K07473 dinJ; DNA-damage-inducible protein J D RPM_01630 RelE K19158 yoeB; toxin YoeB [EC:3.1.-.-] D RPM_00705 antitoxin of toxin-antitoxin (TA) system stbD K19159 yefM; antitoxin YefM D RPM_01625 RelB K19159 yefM; antitoxin YefM D RPM_07250 hypothetical protein K19165 phd; antitoxin Phd D RPM_02075 Plasmid maintenance system antidote protein K21498 higA-1; antitoxin HigA-1 D RPM_02550 virulence-associated protein I K21498 higA-1; antitoxin HigA-1 D RPM_07245 plasmid stability protein K07062 fitB; toxin FitB [EC:3.1.-.-] D RPM_05635 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RPM_06570 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D RPM_00580 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D RPM_01735 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D RPM_02505 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RPM_05335 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RPM_05070 hypothetical protein K09159 cptB; antitoxin CptB D RPM_04095 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RPM_04100 cysteine desulfhydrase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:rrh01504] D RPM_03105 hypothetical protein K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-] D RPM_01715 outer membrane protein tolC precursor K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:rrh03100] D RPM_t07589 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RPM_t07597 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RPM_t07583 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RPM_t07595 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RPM_t07619 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RPM_t07571 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RPM_t07579 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RPM_t07573 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D RPM_t07585 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RPM_t07587 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RPM_t07559 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RPM_t07601 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RPM_t07605 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RPM_t07611 tRNA-His K14226 tRNA-His; tRNA His D RPM_t07577 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D RPM_t07599 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RPM_t07621 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RPM_t07609 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RPM_t07575 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RPM_t07615 tRNA-Met K14230 tRNA-Met; tRNA Met D RPM_t07569 tRNA-Met K14230 tRNA-Met; tRNA Met D RPM_t07563 tRNA-Met K14230 tRNA-Met; tRNA Met D RPM_t07557 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D RPM_t07617 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D RPM_t07581 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RPM_t07593 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RPM_t07613 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RPM_t07623 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RPM_t07561 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RPM_t07567 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RPM_t07565 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D RPM_t07607 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D RPM_t07591 tRNA-Val K14237 tRNA-Val; tRNA Val D RPM_t07603 tRNA-Val K14237 tRNA-Val; tRNA Val D RPM_r07627 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RPM_r07629 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RPM_r07625 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D RPM_06095 thioredoxin peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D RPM_02770 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D RPM_00445 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D RPM_00005 PEP synthetase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D RPM_05830 DNase, TatD family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D RPM_02780 negative regulator of beta-lactamase expression K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RPM_03775 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D RPM_01560 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D RPM_00490 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D RPM_01465 ferredoxin, 2Fe-2s K04755 fdx; ferredoxin, 2Fe-2S D RPM_07065 ferredoxin K05524 fdxA; ferredoxin C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism C 99987 Cofactor metabolism D RPM_05750 2-polyprenylphenol 6-hydroxylase accessory protein K03688 ubiB; ubiquinone biosynthesis protein D RPM_05260 hypothetical protein K18587 COQ9; ubiquinone biosynthesis protein COQ9 D RPM_01175 oligoketide cyclase/lipid transport protein K18588 COQ10; coenzyme Q-binding protein COQ10 C 99988 Secondary metabolism C 99999 Others D RPM_06340 serine esterase K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D RPM_05665 cold shock-like protein K03704 cspA; cold shock protein C 99974 Translation C 99975 Protein processing D RPM_07185 tig; trigger factor K03545 tig; trigger factor D RPM_03325 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D RPM_02440 ChlI K07391 comM; magnesium chelatase family protein C 99976 Replication and repair D RPM_07040 DNA repair protein RadC K03630 radC; DNA repair protein RadC D RPM_05900 RmuC family protein K09760 rmuC; DNA recombination protein RmuC D RPM_02515 DNA processing protein Smf K04096 smf; DNA processing protein C 99979 Viral proteins C 99998 Others D RPM_07335 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D RPM_04070 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D RPM_02305 cationic amino acid transporter-1 K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D RPM_01195 acriflavin resistance plasma membrane protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D RPM_03745 ADP,ATP carrier protein K03301 TC.AAA; ATP:ADP antiporter, AAA family D RPM_06295 ADP,ATP carrier protein K03301 TC.AAA; ATP:ADP antiporter, AAA family D RPM_00495 ADP,ATP carrier protein K03301 TC.AAA; ATP:ADP antiporter, AAA family C 99978 Cell growth D RPM_03030 intracellular septation protein A K06190 ispZ; intracellular septation protein C 99993 Cell motility C 99995 Signaling proteins D RPM_01960 GTP-binding protein K06207 typA; GTP-binding protein C 99992 Structural proteins D RPM_00715 VacJ lipoprotein precursor K04754 mlaA; phospholipid-binding lipoprotein MlaA D RPM_00630 OmpW family outer-membrane protein K07275 ompW; outer membrane protein D RPM_04980 cytochrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE C 99994 Others D RPM_06695 tellurium resistance protein TerC K05794 terC; tellurite resistance protein TerC D RPM_01275 periplasmic divalent cation tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D RPM_02475 cyaY; frataxin-like protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY B B 09194 Poorly characterized C 99996 General function prediction only D RPM_01315 cation transport regulator K06197 chaB; cation transport regulator D RPM_00560 HesB protein family protein K15724 erpA; iron-sulfur cluster insertion protein D RPM_03760 ribonuclease BN K07058 K07058; membrane protein D RPM_00955 hypothetical protein K07146 K07146; UPF0176 protein C 99997 Function unknown D RPM_01730 hypothetical protein K06867 K06867; uncharacterized protein D RPM_01250 hypothetical protein K06867 K06867; uncharacterized protein D RPM_01590 hypothetical protein K06867 K06867; uncharacterized protein D RPM_02805 hypothetical protein K06867 K06867; uncharacterized protein D RPM_02600 alpha/beta hydrolase family protein K06889 K06889; uncharacterized protein D RPM_01070 stabilizing membrane protein K06890 K06890; uncharacterized protein D RPM_04005 alpha/beta hydrolase K07018 K07018; uncharacterized protein D RPM_01455 immunogenic protein K07080 K07080; uncharacterized protein D RPM_06550 putative ATPase K07133 K07133; uncharacterized protein D RPM_02700 hypothetical protein K08998 K08998; uncharacterized protein D RPM_07160 hypothetical protein K09131 K09131; uncharacterized protein D RPM_01190 hypothetical protein K09779 K09779; uncharacterized protein D RPM_03945 hypothetical protein K09861 K09861; uncharacterized protein D RPM_06180 hypothetical protein K09985 K09985; uncharacterized protein D RPM_00620 putative cytoplasmic protein K09987 K09987; uncharacterized protein D RPM_01720 hypothetical protein K09991 K09991; uncharacterized protein D RPM_00930 putative nucleoside-diphosphate-sugar epimerase K07276 K07276; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 11, 2024