+D GENES KO #

  KEGG Orthology (KO) - Ruminococcus torques

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:rto00010] D RTO_25380 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RTO_18990 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RTO_23100 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RTO_02210 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RTO_06820 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RTO_25570 Uncharacterized protein conserved in bacteria K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D RTO_14410 fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RTO_23240 ketose-bisphosphate aldolases K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RTO_17460 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RTO_17440 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RTO_17450 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RTO_17480 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RTO_26870 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RTO_17540 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RTO_08070 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D RTO_10590 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D RTO_28190 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D RTO_09610 acetaldehyde dehydrogenase/alcohol dehydrogenase AdhE K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D RTO_08790 Aldo/keto reductases, related to diketogulonate reductase K00002 AKR1A1; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D RTO_07190 acetyl-CoA synthetase (ADP-forming) alpha subunit/branched-chain acyl-CoA synthetase (ADP-forming) alpha subunit K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D RTO_26970 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D RTO_29940 Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RTO_04020 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D RTO_30010 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D RTO_00250 PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RTO_30100 PTS system IIA component, Glc family (TC 4.A.1) K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RTO_07670 PTS system IIA component, Glc family (TC 4.A.1)/PTS system IIB component, Glc family (TC 4.A.1)/PTS system IIC component, Glc family (TC 4.A.1) K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] C 00020 Citrate cycle (TCA cycle) [PATH:rto00020] D RTO_07040 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RTO_15010 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RTO_14980 Aconitase A K01681 ACO; aconitate hydratase [EC:4.2.1.3] D RTO_20110 isocitrate dehydrogenase, NADP-dependent, eukaryotic type K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D RTO_28260 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RTO_23520 Aspartate oxidase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RTO_23510 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RTO_00810 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D RTO_00800 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D RTO_04020 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D RTO_10590 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:rto00030] D RTO_18990 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RTO_10630 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D RTO_19740 Deoxyxylulose-5-phosphate synthase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RTO_02150 Transketolase, C-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RTO_02160 Transketolase, N-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RTO_02170 transaldolase, putative, TalC family K00616 TALDO1; transaldolase [EC:2.2.1.2] D RTO_05740 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D RTO_21980 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D RTO_23410 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D RTO_29940 Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RTO_14670 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RTO_27020 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RTO_10960 Entner-Doudoroff aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D RTO_10970 Sugar kinases, ribokinase family K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D RTO_14410 fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RTO_23240 ketose-bisphosphate aldolases K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RTO_25570 Uncharacterized protein conserved in bacteria K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D RTO_23100 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RTO_02210 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RTO_06820 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:rto00040] D RTO_09200 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D RTO_19030 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RTO_08790 Aldo/keto reductases, related to diketogulonate reductase K00002 AKR1A1; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D RTO_26000 L-ribulose 5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D RTO_10630 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D RTO_26010 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4] D RTO_08820 Sugar (pentulose and hexulose) kinases K00854 xylB; xylulokinase [EC:2.7.1.17] D RTO_31790 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D RTO_10560 Sugar (pentulose and hexulose) kinases K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D RTO_09310 rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D RTO_08410 L-rhamnulose 1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19] D RTO_08810 Threonine dehydrogenase and related Zn-dependent dehydrogenases K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D RTO_09250 L-threonine 3-dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D RTO_29560 Threonine dehydrogenase and related Zn-dependent dehydrogenases K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D RTO_09070 Threonine dehydrogenase and related Zn-dependent dehydrogenases K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D RTO_25420 Threonine dehydrogenase and related Zn-dependent dehydrogenases K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D RTO_10570 L-fucose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3] D RTO_09100 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:rto00051] D RTO_06830 Sugar kinases, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RTO_29460 Sugar kinases, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RTO_10570 L-fucose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3] D RTO_09100 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D RTO_09300 L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14] D RTO_10560 Sugar (pentulose and hexulose) kinases K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D RTO_09310 rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D RTO_08410 L-rhamnulose 1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19] D RTO_23100 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RTO_02210 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RTO_06820 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RTO_25570 Uncharacterized protein conserved in bacteria K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D RTO_26520 fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D RTO_08810 Threonine dehydrogenase and related Zn-dependent dehydrogenases K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D RTO_09250 L-threonine 3-dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D RTO_29560 Threonine dehydrogenase and related Zn-dependent dehydrogenases K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D RTO_09070 Threonine dehydrogenase and related Zn-dependent dehydrogenases K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D RTO_25420 Threonine dehydrogenase and related Zn-dependent dehydrogenases K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D RTO_14410 fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RTO_23240 ketose-bisphosphate aldolases K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RTO_17460 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RTO_32350 Beta-fructosidases (levanase/invertase) K03332 fruA; fructan beta-fructosidase [EC:3.2.1.80] D RTO_05740 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D RTO_25400 Pentose-5-phosphate-3-epimerase K17195 alsE; D-allulose-6-phosphate 3-epimerase [EC:5.1.3.-] D RTO_23270 PTS system, fructose subfamily, IIA component K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D RTO_23250 PTS system, fructose subfamily, IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D RTO_26530 PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4) K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D RTO_14350 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02795 manY; mannose PTS system EIIC component D RTO_14360 PTS system IID component, Man family (TC 4.A.6) K02796 manZ; mannose PTS system EIID component C 00052 Galactose metabolism [PATH:rto00052] D RTO_26970 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D RTO_17780 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D RTO_17770 UTP-hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D RTO_26890 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RTO_29940 Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RTO_25380 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RTO_20760 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RTO_24980 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RTO_22190 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D RTO_02770 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RTO_13840 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RTO_25230 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RTO_08800 1-phosphofructokinase K00917 lacC; tagatose 6-phosphate kinase [EC:2.7.1.144] D RTO_23100 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RTO_02210 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RTO_06820 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RTO_08840 ketose-bisphosphate aldolases K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40] D RTO_01630 beta-fructofuranosidase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D RTO_06850 Beta-fructosidases (levanase/invertase) K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D RTO_23640 sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D RTO_02710 Alpha-glucosidases, family 31 of glycosyl hydrolases K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D RTO_02700 Glycosidases K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10] D RTO_06750 Glycosidases K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10] D RTO_32330 Glycosidases K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10] C 00053 Ascorbate and aldarate metabolism [PATH:rto00053] D RTO_19030 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RTO_08790 Aldo/keto reductases, related to diketogulonate reductase K00002 AKR1A1; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D RTO_26000 L-ribulose 5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D RTO_06330 D-glucarate dehydratase K01706 gudD; glucarate dehydratase [EC:4.2.1.40] C 00500 Starch and sucrose metabolism [PATH:rto00500] D RTO_13850 PTS system sucrose-specific IIB component, Glc family (TC 4.A.1.2.12)/PTS system sucrose-specific IIC component, Glc family (TC 4.A.1.2.12) K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D RTO_01640 PTS system, glucose subfamily, IIA component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D RTO_23650 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D RTO_01630 beta-fructofuranosidase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D RTO_06850 Beta-fructosidases (levanase/invertase) K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D RTO_23640 sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D RTO_02710 Alpha-glucosidases, family 31 of glycosyl hydrolases K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D RTO_06840 Glycosidases K05341 E2.4.1.4; amylosucrase [EC:2.4.1.4] D RTO_25240 Glycosidases K05341 E2.4.1.4; amylosucrase [EC:2.4.1.4] D RTO_25150 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RTO_24470 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RTO_30000 Phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D RTO_29980 Phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D RTO_27390 Phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D RTO_29990 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component D RTO_30010 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D RTO_03450 glucose-1-phosphate adenylyltransferase, GlgD subunit K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D RTO_03460 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D RTO_14710 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D RTO_14720 ADP-glucose pyrophosphorylase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D RTO_19820 glycogen/starch synthases, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21] D RTO_31880 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D RTO_01600 glycogen/starch/alpha-glucan phosphorylases K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D RTO_26270 glycogen/starch/alpha-glucan phosphorylases K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D RTO_05400 Glycosidases K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135] D RTO_02700 Glycosidases K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10] D RTO_06750 Glycosidases K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10] D RTO_32330 Glycosidases K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10] D RTO_00220 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D RTO_00250 PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RTO_30100 PTS system IIA component, Glc family (TC 4.A.1) K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RTO_00210 Metal-dependent hydrolase K06896 mapP; maltose 6'-phosphate phosphatase [EC:3.1.3.90] D RTO_15340 isoamylase K01214 ISA; isoamylase [EC:3.2.1.68] D RTO_17290 Type II secretory pathway, pullulanase PulA and related glycosidases K01214 ISA; isoamylase [EC:3.2.1.68] D RTO_29940 Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RTO_25380 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RTO_18990 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RTO_06830 Sugar kinases, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RTO_29460 Sugar kinases, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rto00520] D RTO_00250 PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RTO_30100 PTS system IIA component, Glc family (TC 4.A.1) K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RTO_11090 PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2) K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D RTO_00320 N-acetylglucosamine 6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D RTO_23870 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D RTO_00330 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D RTO_23790 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D RTO_06830 Sugar kinases, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RTO_29460 Sugar kinases, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RTO_15290 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RTO_14240 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D RTO_26990 hypothetical protein K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D RTO_30290 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RTO_14280 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RTO_23810 Putative N-acetylmannosamine-6-phosphate epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D RTO_23820 Dihydrodipicolinate synthase/N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3] D RTO_08210 Nucleoside-diphosphate-sugar epimerases K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35] D RTO_07670 PTS system IIA component, Glc family (TC 4.A.1)/PTS system IIB component, Glc family (TC 4.A.1)/PTS system IIC component, Glc family (TC 4.A.1) K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D RTO_25380 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RTO_29940 Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RTO_19030 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RTO_17780 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D RTO_17770 UTP-hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D RTO_26890 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RTO_22190 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D RTO_14350 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02795 manY; mannose PTS system EIIC component D RTO_14360 PTS system IID component, Man family (TC 4.A.6) K02796 manZ; mannose PTS system EIID component D RTO_18990 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RTO_22660 Predicted kinase related to galactokinase and mevalonate kinase K25314 FKGP; fucokinase / fucose-1-phosphate guanylyltransferase [EC:2.7.1.52 2.7.7.30] D RTO_03450 glucose-1-phosphate adenylyltransferase, GlgD subunit K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D RTO_03460 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D RTO_14710 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D RTO_14720 ADP-glucose pyrophosphorylase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:rto00620] D RTO_10590 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D RTO_15390 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D RTO_09610 acetaldehyde dehydrogenase/alcohol dehydrogenase AdhE K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D RTO_08790 Aldo/keto reductases, related to diketogulonate reductase K00002 AKR1A1; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D RTO_17680 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D RTO_17670 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D RTO_09020 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D RTO_17540 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RTO_10370 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D RTO_10350 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D RTO_05610 Acylphosphatases K01512 acyP; acylphosphatase [EC:3.6.1.7] D RTO_09170 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D RTO_23200 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D RTO_25900 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D RTO_07190 acetyl-CoA synthetase (ADP-forming) alpha subunit/branched-chain acyl-CoA synthetase (ADP-forming) alpha subunit K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D RTO_28190 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D RTO_15920 Lactoylglutathione lyase and related lyases K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D RTO_22890 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D RTO_07370 Zn-dependent hydrolases, including glyoxylases K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D RTO_17840 Malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D RTO_20170 Pyruvate/oxaloacetate carboxyltransferase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D RTO_20160 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D RTO_00810 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D RTO_00800 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D RTO_04020 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D RTO_08070 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D RTO_09160 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_23180 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_21930 Isopropylmalate/homocitrate/citramalate synthases K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rto00630] D RTO_07040 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RTO_15010 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RTO_14980 Aconitase A K01681 ACO; aconitate hydratase [EC:4.2.1.3] D RTO_09160 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_23180 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_17500 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D RTO_17590 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D RTO_17080 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D RTO_14420 Uncharacterized protein related to glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RTO_29470 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RTO_17970 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RTO_23720 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RTO_06300 tartronate semialdehyde reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D RTO_06360 tartronate semialdehyde reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D RTO_07870 lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77] D RTO_23480 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region K03779 ttdA; L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32] D RTO_23470 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region K03780 ttdB; L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32] D RTO_10960 Entner-Doudoroff aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] C 00640 Propanoate metabolism [PATH:rto00640] D RTO_09170 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D RTO_23200 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D RTO_25900 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D RTO_07190 acetyl-CoA synthetase (ADP-forming) alpha subunit/branched-chain acyl-CoA synthetase (ADP-forming) alpha subunit K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D RTO_17680 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D RTO_17670 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D RTO_09020 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D RTO_15390 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D RTO_10370 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D RTO_10350 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D RTO_28190 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D RTO_21400 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] D RTO_25450 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) K18471 ydjG; methylglyoxal reductase [EC:1.1.1.-] D RTO_27640 Glycerol dehydrogenase and related enzymes K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D RTO_07870 lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77] C 00650 Butanoate metabolism [PATH:rto00650] D RTO_09160 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_23180 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_23190 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RTO_09610 acetaldehyde dehydrogenase/alcohol dehydrogenase AdhE K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D RTO_20160 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D RTO_20150 Biotin carboxyl carrier protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D RTO_28260 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RTO_23520 Aspartate oxidase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RTO_23510 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RTO_15390 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D RTO_10590 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D RTO_27820 Threonine dehydrogenase and related Zn-dependent dehydrogenases K18369 adh2; alcohol dehydrogenase [EC:1.1.1.-] D RTO_20070 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RTO_19390 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RTO_24080 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:rto00660] D RTO_20070 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RTO_19390 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RTO_24080 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RTO_25920 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D RTO_25940 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D RTO_25910 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D RTO_25930 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D RTO_20050 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:rto00562] D RTO_29960 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D RTO_09260 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D RTO_17460 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:rto00190] D RTO_09340 NADH:ubiquinone oxidoreductase 24 kD subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D RTO_09330 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D RTO_09320 hydrogenases, Fe-only K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D RTO_28260 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RTO_23520 Aspartate oxidase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RTO_23510 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RTO_06190 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D RTO_06200 ATP synthase, F1 gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D RTO_06220 ATP synthase, F1 delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D RTO_06180 ATP synthase F1 subcomplex epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D RTO_06250 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D RTO_06240 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D RTO_06000 Archaeal/vacuolar-type H+-ATPase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D RTO_05990 Archaeal/vacuolar-type H+-ATPase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D RTO_23010 Archaeal/vacuolar-type H+-ATPase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D RTO_22950 Archaeal/vacuolar-type H+-ATPase subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D RTO_23020 H(+)-transporting ATP synthase, vacuolar type, subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D RTO_06030 Archaeal/vacuolar-type H+-ATPase subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D RTO_06010 Archaeal/vacuolar-type H+-ATPase subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D RTO_22980 Archaeal/vacuolar-type H+-ATPase subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D RTO_06060 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D RTO_06050 Archaeal/vacuolar-type H+-ATPase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D RTO_22960 Archaeal/vacuolar-type H+-ATPase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D RTO_06040 ATP synthase subunit C. K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K D RTO_22970 ATP synthase subunit C. K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K D RTO_26840 Inorganic pyrophosphatase/exopolyphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] D RTO_24790 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D RTO_26960 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:rto00680] D RTO_17970 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RTO_23720 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RTO_26870 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RTO_14410 fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RTO_23240 ketose-bisphosphate aldolases K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RTO_25570 Uncharacterized protein conserved in bacteria K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D RTO_23100 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RTO_02210 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RTO_06820 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RTO_17680 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D RTO_17670 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D RTO_17480 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RTO_20090 Phosphoglycerate dehydrogenase and related dehydrogenases K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RTO_20080 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D RTO_29950 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39] C 00910 Nitrogen metabolism [PATH:rto00910] D RTO_03680 Nitrogenase subunit NifH (ATPase) K02588 nifH; nitrogenase iron protein NifH D RTO_03610 Mo-nitrogenase iron protein subunit NifH K02588 nifH; nitrogenase iron protein NifH D RTO_27890 hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D RTO_07930 Dioxygenases related to 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D RTO_19900 Glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D RTO_14420 Uncharacterized protein related to glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RTO_29470 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RTO_15840 Glutamate synthase domain 2 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D RTO_06290 NADPH-dependent glutamate synthase beta chain and related oxidoreductases K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RTO_15850 glutamate synthase (NADH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RTO_21770 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RTO_06530 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D RTO_24200 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00920 Sulfur metabolism [PATH:rto00920] D RTO_19530 Exopolyphosphatase-related proteins K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D RTO_18080 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RTO_07320 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RTO_31680 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D RTO_18750 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D RTO_31710 Cystathionine beta-lyases/cystathionine gamma-synthases K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:rto00061] D RTO_10370 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D RTO_10350 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D RTO_17720 acyl carrier protein K02078 acpP; acyl carrier protein D RTO_10420 acyl carrier protein K02078 acpP; acyl carrier protein D RTO_30490 Acyl carrier protein K02078 acpP; acyl carrier protein D RTO_10400 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RTO_10430 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RTO_10380 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RTO_09190 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RTO_09370 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RTO_10390 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RTO_10360 beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RTO_10410 putative enoyl-(acyl-carrier-protein) reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D RTO_30500 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:rto00071] D RTO_09160 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_23180 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_30500 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RTO_09610 acetaldehyde dehydrogenase/alcohol dehydrogenase AdhE K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis [PATH:rto00121] D RTO_16120 Short-chain dehydrogenases of various substrate specificities K23231 E1.1.1.201; 7beta-hydroxysteroid dehydrogenase (NADP+) [EC:1.1.1.201] C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:rto00561] D RTO_08790 Aldo/keto reductases, related to diketogulonate reductase K00002 AKR1A1; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D RTO_27640 Glycerol dehydrogenase and related enzymes K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D RTO_11150 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D RTO_17710 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D RTO_27350 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D RTO_00790 1-acyl-sn-glycerol-3-phosphate acyltransferases K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RTO_14150 1-acyl-sn-glycerol-3-phosphate acyltransferases K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RTO_07690 undecaprenol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D RTO_02770 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RTO_13840 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RTO_25230 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00564 Glycerophospholipid metabolism [PATH:rto00564] D RTO_27360 glycerol 3-phosphate dehydrogenase (NAD(P)+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D RTO_06700 Predicted dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D RTO_27350 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D RTO_00790 1-acyl-sn-glycerol-3-phosphate acyltransferases K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RTO_14150 1-acyl-sn-glycerol-3-phosphate acyltransferases K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RTO_07690 undecaprenol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D RTO_31290 Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RTO_26170 CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D RTO_22620 Phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D RTO_22630 Phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D RTO_27550 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D RTO_23050 cardiolipin synthetase 2 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D RTO_03030 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] D RTO_02990 Phosphatidylglycerophosphate synthase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism [PATH:rto00600] D RTO_20760 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RTO_24980 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RTO_02770 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RTO_13840 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RTO_25230 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:rto00230] D RTO_17360 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D RTO_23410 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D RTO_29940 Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RTO_14670 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RTO_27020 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RTO_17210 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D RTO_05810 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D RTO_05820 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D RTO_18040 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D RTO_05830 phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D RTO_05840 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D RTO_16160 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D RTO_17220 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D RTO_29270 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D RTO_29260 IMP cyclohydrolase-like protein. K11176 purO; IMP cyclohydrolase [EC:3.5.4.10] D RTO_32430 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D RTO_06770 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D RTO_23420 purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D RTO_30220 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D RTO_15710 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D RTO_22240 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D RTO_05690 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D RTO_10910 xanthine dehydrogenase, molybdenum binding subunit apoprotein K00087 ygeS; xanthine dehydrogenase molybdenum-binding subunit [EC:1.17.1.4] D RTO_10920 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs K13479 ygeT; xanthine dehydrogenase FAD-binding subunit [EC:1.17.1.4] D RTO_09240 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs K13479 ygeT; xanthine dehydrogenase FAD-binding subunit [EC:1.17.1.4] D RTO_24190 Cytosine deaminase and related metal-dependent hydrolases K01487 guaD; guanine deaminase [EC:3.5.4.3] D RTO_27520 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D RTO_23620 Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D RTO_26300 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D RTO_05390 hypothetical protein K21138 HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2] D RTO_07380 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D RTO_09410 Uncharacterized protein conserved in bacteria K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5] D RTO_07900 Uncharacterized protein conserved in bacteria K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5] D RTO_25650 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D RTO_18690 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D RTO_23430 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D RTO_09680 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D RTO_06530 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D RTO_24200 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:rto00240] D RTO_26230 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D RTO_27210 Carbamoylphosphate synthase large subunit (split gene in MJ) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D RTO_26220 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D RTO_27450 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D RTO_27440 Aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D RTO_22180 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D RTO_05900 dihydroorotate dehydrogenase (subfamily 1) family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D RTO_05910 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D RTO_05890 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D RTO_05920 orotidine 5'-phosphate decarboxylase, subfamily 2 K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D RTO_26140 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D RTO_06260 MAF protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D RTO_24860 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D RTO_20210 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D RTO_18890 Uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D RTO_32430 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D RTO_06770 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D RTO_23450 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D RTO_23460 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D RTO_23440 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D RTO_26300 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D RTO_00820 Deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D RTO_18780 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RTO_27280 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D RTO_03550 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:rto00250] D RTO_17910 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D RTO_13580 Aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D RTO_15950 aspartate--ammonia ligase, AsnA-type K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D RTO_06950 Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RTO_16880 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RTO_18920 Aspartate/tyrosine/aromatic aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RTO_26370 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RTO_03750 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D RTO_18690 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D RTO_17220 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D RTO_27450 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D RTO_27440 Aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D RTO_15840 Glutamate synthase domain 2 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D RTO_06290 NADPH-dependent glutamate synthase beta chain and related oxidoreductases K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RTO_15850 glutamate synthase (NADH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RTO_21770 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RTO_19900 Glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D RTO_14420 Uncharacterized protein related to glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RTO_29470 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RTO_26230 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D RTO_27210 Carbamoylphosphate synthase large subunit (split gene in MJ) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D RTO_26220 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D RTO_15290 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RTO_17210 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:rto00260] D RTO_19940 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D RTO_21170 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RTO_03760 aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RTO_25640 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RTO_24000 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RTO_29950 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39] D RTO_03780 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D RTO_26860 Threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D RTO_17970 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RTO_23720 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RTO_17480 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RTO_20090 Phosphoglycerate dehydrogenase and related dehydrogenases K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RTO_20080 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D RTO_22620 Phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D RTO_03170 L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D RTO_03180 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D RTO_17760 threonine dehydratase, medium form K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D RTO_07700 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D RTO_07710 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:rto00270] D RTO_18080 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RTO_07320 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RTO_31680 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D RTO_16260 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D RTO_31720 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D RTO_19850 B12 binding domain./Pterin binding enzyme./Homocysteine S-methyltransferase. K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D RTO_30310 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D RTO_08380 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D RTO_17470 methylthioadenosine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D RTO_14860 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RTO_32080 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RTO_14140 LuxS protein involved in autoinducer AI2 synthesis K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D RTO_19940 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D RTO_21170 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RTO_03760 aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RTO_25640 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RTO_24000 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RTO_18750 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D RTO_31710 Cystathionine beta-lyases/cystathionine gamma-synthases K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D RTO_21860 O-acetylhomoserine sulfhydrolase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D RTO_31690 O-acetylhomoserine sulfhydrolase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D RTO_17910 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D RTO_28190 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D RTO_27220 1-aminocyclopropane-1-carboxylate deaminase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D RTO_03170 L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D RTO_03180 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D RTO_20090 Phosphoglycerate dehydrogenase and related dehydrogenases K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RTO_20080 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:rto00280] D RTO_27000 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D RTO_09160 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_23180 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rto00290] D RTO_17760 threonine dehydratase, medium form K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D RTO_25920 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D RTO_25940 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D RTO_25910 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D RTO_25930 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D RTO_20050 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D RTO_20070 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RTO_19390 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RTO_24080 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RTO_19410 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D RTO_20060 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D RTO_10980 Dihydroxyacid dehydratase/phosphogluconate dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D RTO_18920 Aspartate/tyrosine/aromatic aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RTO_21930 Isopropylmalate/homocitrate/citramalate synthases K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:rto00300] D RTO_25640 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RTO_24000 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RTO_19940 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D RTO_21170 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RTO_03760 aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RTO_06340 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RTO_08600 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RTO_25560 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D RTO_14080 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D RTO_26420 acetylornithine and succinylornithine aminotransferases K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D RTO_14640 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D RTO_29580 dipeptidase, putative K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D RTO_29490 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D RTO_17560 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D RTO_26020 diaminopimelate dehydrogenase K03340 dapdh; diaminopimelate dehydrogenase [EC:1.4.1.16] D RTO_10730 UDP-N-acetylmuramyl-tripeptide synthetases K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RTO_06500 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation D RTO_09160 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_23180 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00220 Arginine biosynthesis [PATH:rto00220] D RTO_30390 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D RTO_26370 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RTO_03750 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D RTO_14420 Uncharacterized protein related to glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RTO_29470 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RTO_19900 Glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D RTO_06530 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D RTO_24200 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D RTO_17910 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D RTO_18920 Aspartate/tyrosine/aromatic aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RTO_26400 glutamate N-acetyltransferase/amino-acid acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D RTO_26390 N-acetylglutamate synthase K22477 argO; N-acetylglutamate synthase [EC:2.3.1.1] D RTO_26410 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D RTO_26380 N-acetyl-gamma-glutamyl-phosphate reductase, common form K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D RTO_14080 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D RTO_26420 acetylornithine and succinylornithine aminotransferases K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:rto00330] D RTO_03300 Uncharacterized protein, putative amidase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D RTO_08390 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D RTO_23630 Arginine/lysine/ornithine decarboxylases K01585 speA; arginine decarboxylase [EC:4.1.1.19] D RTO_08370 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D RTO_08380 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D RTO_08350 carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96] D RTO_05600 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D RTO_24740 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D RTO_08530 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D RTO_17910 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:rto00340] D RTO_20620 ATP phosphoribosyltransferase catalytic subunit K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D RTO_20610 ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D RTO_20650 phosphoribosyl-ATP pyrophosphohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D RTO_25600 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D RTO_22300 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D RTO_22330 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D RTO_20640 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D RTO_17920 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RTO_17430 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D RTO_20630 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] C 00350 Tyrosine metabolism [PATH:rto00350] D RTO_17910 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D RTO_17920 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RTO_09610 acetaldehyde dehydrogenase/alcohol dehydrogenase AdhE K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00360 Phenylalanine metabolism [PATH:rto00360] D RTO_23190 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RTO_17910 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D RTO_17920 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00380 Tryptophan metabolism D RTO_09160 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_23180 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rto00400] D RTO_27430 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D RTO_26110 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D RTO_26100 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D RTO_15120 3-dehydroquinate dehydratase, type I K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10] D RTO_32450 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D RTO_30280 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D RTO_04720 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D RTO_20010 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D RTO_07760 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D RTO_07750 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D RTO_07740 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D RTO_07720 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D RTO_07730 Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D RTO_07700 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D RTO_07710 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D RTO_27470 Prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D RTO_04730 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D RTO_17910 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D RTO_17920 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:rto00410] D RTO_02650 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D RTO_02640 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D RTO_03550 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] C 00430 Taurine and hypotaurine metabolism [PATH:rto00430] D RTO_17670 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D RTO_09020 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D RTO_17680 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:rto00450] D RTO_31710 Cystathionine beta-lyases/cystathionine gamma-synthases K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D RTO_16260 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D RTO_31720 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D RTO_19850 B12 binding domain./Pterin binding enzyme./Homocysteine S-methyltransferase. K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D RTO_05590 thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D RTO_24270 putative selenate reductase, YgfK subunit K12527 ygfK; putative selenate reductase [EC:1.97.1.9] D RTO_08590 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs K12529 ygfM; putative selenate reductase FAD-binding subunit D RTO_10040 selenium donor protein K01008 selD; selenide, water dikinase [EC:2.7.9.3] D RTO_31850 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:rto00460] D RTO_25150 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RTO_24470 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RTO_15950 aspartate--ammonia ligase, AsnA-type K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D RTO_17970 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RTO_23720 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:rto00470] D RTO_21890 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RTO_06490 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RTO_23090 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D RTO_16990 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RTO_27220 1-aminocyclopropane-1-carboxylate deaminase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D RTO_29490 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D RTO_17560 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:rto00480] D RTO_20110 isocitrate dehydrogenase, NADP-dependent, eukaryotic type K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D RTO_08380 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:rto00511] D RTO_20760 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RTO_24980 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RTO_10110 Uncharacterised Sugar-binding Domain. K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51] D RTO_27700 hypothetical protein K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51] C 00540 Lipopolysaccharide biosynthesis D RTO_07330 Predicted kinase related to galactokinase and mevalonate kinase K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rto00541] D RTO_26890 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RTO_22190 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D RTO_19030 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RTO_27070 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RTO_27080 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RTO_27100 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D RTO_20670 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D RTO_27090 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D RTO_26990 hypothetical protein K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] C 00550 Peptidoglycan biosynthesis [PATH:rto00550] D RTO_30290 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RTO_14280 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RTO_14700 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D RTO_16990 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RTO_10730 UDP-N-acetylmuramyl-tripeptide synthetases K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RTO_06490 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RTO_06500 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D RTO_26160 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RTO_09570 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RTO_31800 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RTO_16980 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RTO_02260 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D RTO_16960 Cell division protein FtsI/penicillin-binding protein 2 K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D RTO_20390 Cell division protein FtsI/penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A D RTO_01620 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RTO_21940 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RTO_21990 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RTO_21390 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RTO_28150 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D RTO_06150 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 00552 Teichoic acid biosynthesis [PATH:rto00552] D RTO_09570 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RTO_31800 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RTO_07290 bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D RTO_08250 bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D RTO_10290 Teichoic acid biosynthesis proteins K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D RTO_16670 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC K09809 tagF; CDP-glycerol glycerophosphotransferase [EC:2.7.8.12] D RTO_16530 cell envelope-related function transcriptional attenuator common domain K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D RTO_16700 LPS biosynthesis protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:rto00543] D RTO_07270 hypothetical protein K03818 wcaF; putative colanic acid biosynthesis acetyltransferase WcaF [EC:2.3.1.-] D RTO_05490 Predicted membrane protein involved in D-alanine export K19294 algI; alginate O-acetyltransferase complex protein AlgI D RTO_16770 Predicted membrane protein involved in D-alanine export K19294 algI; alginate O-acetyltransferase complex protein AlgI D RTO_03360 Predicted membrane protein involved in D-alanine export K19294 algI; alginate O-acetyltransferase complex protein AlgI D RTO_16600 Predicted membrane protein involved in D-alanine export K19294 algI; alginate O-acetyltransferase complex protein AlgI D RTO_18080 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D RTO_07320 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:rto00730] D RTO_25970 hydroxymethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D RTO_10880 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D RTO_25280 thiamine biosynthesis protein ThiF, family 2 K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] D RTO_15520 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RTO_17400 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RTO_15530 thiazole biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RTO_25300 tyrosine lyase ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D RTO_19730 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D RTO_25290 thiazole-phosphate synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D RTO_00780 Hydroxyethylthiazole kinase, sugar kinase family K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D RTO_00770 thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D RTO_25310 Thiamine monophosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D RTO_10640 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RTO_10620 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D RTO_09680 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:rto00740] D RTO_19550 riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D RTO_00780 Hydroxyethylthiazole kinase, sugar kinase family K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D RTO_17360 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism [PATH:rto00750] D RTO_16170 Pyridoxal/pyridoxine/pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D RTO_20080 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D RTO_03780 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D RTO_03500 pyridoxal phosphate synthase yaaD subunit K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D RTO_03490 pyridoxal phosphate synthase yaaE subunit K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:rto00760] D RTO_13580 Aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D RTO_13570 quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D RTO_13590 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D RTO_23140 putative nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D RTO_23420 purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D RTO_32430 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D RTO_06770 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D RTO_05440 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D RTO_24150 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D RTO_27560 competence/damage-inducible protein CinA C-terminal domain K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D RTO_14050 NAD-dependent protein deacetylases, SIR2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D RTO_19760 Predicted sugar kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:rto00770] D RTO_20070 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RTO_19390 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RTO_24080 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RTO_19410 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D RTO_20060 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D RTO_10980 Dihydroxyacid dehydratase/phosphogluconate dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D RTO_24400 ketopantoate reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D RTO_02640 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D RTO_03440 pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D RTO_03430 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D RTO_20500 pantetheine-phosphate adenylyltransferase, bacterial K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D RTO_17610 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D RTO_11520 Phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D RTO_12290 Phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D RTO_29340 Phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D RTO_03550 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D RTO_02650 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:rto00780] D RTO_10380 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RTO_09190 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RTO_09370 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RTO_10390 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RTO_10360 beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RTO_04560 7-keto-8-aminopelargonate synthetase and related enzymes K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D RTO_04550 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D RTO_04540 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D RTO_05620 iron-only hydrogenase maturation protein HydE K01012 bioB; biotin synthase [EC:2.8.1.6] D RTO_30350 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D RTO_30410 birA, biotin-[acetyl-CoA-carboxylase] ligase region K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism C 00790 Folate biosynthesis [PATH:rto00790] D RTO_04670 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D RTO_04700 dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K13940 sulD; dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.2.25 2.7.6.3] D RTO_04690 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D RTO_24020 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D RTO_08920 folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D RTO_27650 preQ(0) biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D RTO_27660 Organic radical activating enzymes K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D RTO_27670 preQ(0) biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D RTO_27680 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D RTO_15470 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D RTO_15450 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D RTO_27410 Molybdopterin biosynthesis enzymes K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] C 00670 One carbon pool by folate [PATH:rto00670] D RTO_24020 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D RTO_21820 Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D RTO_21810 methenyltetrahydrofolate cyclohydrolase/5,10-methylenetetrahydrofolate dehydrogenase (NADP+) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D RTO_17970 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RTO_23720 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RTO_05820 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D RTO_29270 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D RTO_10700 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D RTO_19850 B12 binding domain./Pterin binding enzyme./Homocysteine S-methyltransferase. K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D RTO_19830 5,10-methylenetetrahydrofolate reductase, prokaryotic form K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:rto00860] D RTO_17240 glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RTO_29530 Cobalamin biosynthesis protein CbiK, Co2+ chelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D RTO_03950 precorrin-2 C20-methyltransferase/cobalt-factor II C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D RTO_03970 precorrin-3 methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272] D RTO_03960 precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D RTO_03920 precorrin-6x reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D RTO_03940 cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D RTO_03980 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit/precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D RTO_04650 Precorrin isomerase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D RTO_03990 cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D RTO_03930 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D RTO_04100 adenosylcobyric acid synthase (glutamine-hydrolysing) K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D RTO_04070 adenosylcobinamide-phosphate synthase K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D RTO_04640 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D RTO_04050 cobalamin-5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D RTO_04040 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D RTO_04060 Fructose-2,6-bisphosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D RTO_06930 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] D RTO_04090 L-threonine O-3-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:rto00900] D RTO_19730 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D RTO_26180 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D RTO_29330 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D RTO_14180 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D RTO_18060 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D RTO_20220 (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D RTO_09160 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_23180 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_19720 Geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RTO_26160 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D RTO_19740 Deoxyxylulose-5-phosphate synthase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RTO_02150 Transketolase, C-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RTO_02160 Transketolase, N-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:rto00523] D RTO_27070 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RTO_27080 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RTO_27100 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D RTO_20670 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D RTO_27090 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:rto01053] D RTO_12320 amino acid adenylation domain K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69] D RTO_11580 amino acid adenylation domain K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69] D RTO_11600 thiazolinyl imide reductase K12241 pchG; pyochelin biosynthesis protein PchG D RTO_12330 thiazolinyl imide reductase K12241 pchG; pyochelin biosynthesis protein PchG D RTO_12300 Peptide arylation enzymes K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-] D RTO_11530 Peptide arylation enzymes K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-] D RTO_12310 amino acid adenylation domain K04784 irp2; yersiniabactin nonribosomal peptide synthetase D RTO_11540 amino acid adenylation domain K04784 irp2; yersiniabactin nonribosomal peptide synthetase C 01055 Biosynthesis of vancomycin group antibiotics D RTO_27080 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:rto00946] D RTO_25150 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RTO_24470 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RTO_25000 Alpha-L-rhamnosidase N-terminal domain./Bacterial alpha-L-rhamnosidase. K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40] D RTO_25170 Alpha-L-rhamnosidase N-terminal domain./Bacterial alpha-L-rhamnosidase. K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:rto00332] D RTO_24740 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D RTO_08530 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:rto00261] D RTO_19940 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D RTO_21170 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RTO_03760 aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RTO_06340 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RTO_08600 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RTO_25560 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:rto00521] D RTO_25380 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RTO_29940 Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RTO_29960 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D RTO_27070 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RTO_27080 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RTO_27100 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D RTO_20670 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D RTO_27090 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D RTO_25380 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:rto00525] D RTO_27070 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RTO_27080 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:rto00401] D RTO_04730 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D RTO_17910 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D RTO_17920 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D RTO_07760 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D RTO_07750 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D RTO_10400 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RTO_09190 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RTO_09370 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RTO_10390 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D RTO_17720 acyl carrier protein K02078 acpP; acyl carrier protein D RTO_10420 acyl carrier protein K02078 acpP; acyl carrier protein D RTO_30490 Acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:rto00999] D RTO_30310 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D RTO_25150 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RTO_24470 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:rto00362] D RTO_28030 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D RTO_20160 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D RTO_20150 Biotin carboxyl carrier protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D RTO_23190 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RTO_09160 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_23180 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation D RTO_05610 Acylphosphatases K01512 acyP; acylphosphatase [EC:3.6.1.7] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:rto00625] D RTO_09610 acetaldehyde dehydrogenase/alcohol dehydrogenase AdhE K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D RTO_03680 Nitrogenase subunit NifH (ATPase) K02588 nifH; nitrogenase iron protein NifH D RTO_03610 Mo-nitrogenase iron protein subunit NifH K02588 nifH; nitrogenase iron protein NifH C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation D RTO_09170 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D RTO_23200 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D RTO_25900 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] C 00791 Atrazine degradation C 00930 Caprolactam degradation D RTO_08790 Aldo/keto reductases, related to diketogulonate reductase K00002 AKR1A1; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:rto00626] D RTO_09610 acetaldehyde dehydrogenase/alcohol dehydrogenase AdhE K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:rto03020] D RTO_14650 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RTO_14660 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RTO_27530 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D RTO_18020 Rad3-related DNA helicases K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:rto03010] D RTO_26820 Ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D RTO_16220 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D RTO_09830 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D RTO_09640 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D RTO_09720 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D RTO_00390 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6 D RTO_09750 Ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D RTO_09900 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D RTO_09650 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D RTO_14810 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D RTO_09660 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D RTO_09760 Ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D RTO_19560 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D RTO_24590 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D RTO_00410 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18 D RTO_09850 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D RTO_19890 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21 D RTO_14610 ribosomal protein L1, bacterial/chloroplast K02863 RP-L1; large subunit ribosomal protein L1 D RTO_09860 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D RTO_09890 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D RTO_09880 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D RTO_09740 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D RTO_14630 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12 D RTO_00430 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9 D RTO_14600 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D RTO_05370 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D RTO_09790 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D RTO_09700 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D RTO_09820 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16 D RTO_09620 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17 D RTO_09730 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D RTO_24630 ribosomal protein L19, bacterial type K02884 RP-L19; large subunit ribosomal protein L19 D RTO_18830 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D RTO_21190 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D RTO_09840 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D RTO_09870 Ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D RTO_09780 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D RTO_00120 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25 D RTO_21210 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27 D RTO_20440 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28 D RTO_09710 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D RTO_17860 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D RTO_17700 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D RTO_02480 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34 D RTO_18820 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35 D RTO_R_32970 16S; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RTO_R_32960 23S; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:rto00970] D RTO_T_32940 RTO_T_32940 K14218 tRNA-Ala; tRNA Ala D RTO_T_32540 RTO_T_32540 K14219 tRNA-Arg; tRNA Arg D RTO_T_32680 RTO_T_32680 K14219 tRNA-Arg; tRNA Arg D RTO_T_32570 RTO_T_32570 K14219 tRNA-Arg; tRNA Arg D RTO_T_32930 RTO_T_32930 K14219 tRNA-Arg; tRNA Arg D RTO_T_32490 RTO_T_32490 K14220 tRNA-Asn; tRNA Asn D RTO_T_32600 RTO_T_32600 K14220 tRNA-Asn; tRNA Asn D RTO_T_32640 RTO_T_32640 K14221 tRNA-Asp; tRNA Asp D RTO_T_32820 RTO_T_32820 K14221 tRNA-Asp; tRNA Asp D RTO_T_32510 RTO_T_32510 K14222 tRNA-Cys; tRNA Cys D RTO_T_32550 RTO_T_32550 K14222 tRNA-Cys; tRNA Cys D RTO_T_32700 RTO_T_32700 K14223 tRNA-Gln; tRNA Gln D RTO_T_32780 RTO_T_32780 K14223 tRNA-Gln; tRNA Gln D RTO_T_32500 RTO_T_32500 K14224 tRNA-Glu; tRNA Glu D RTO_T_32610 RTO_T_32610 K14224 tRNA-Glu; tRNA Glu D RTO_T_32560 RTO_T_32560 K14224 tRNA-Glu; tRNA Glu D RTO_T_32670 RTO_T_32670 K14225 tRNA-Gly; tRNA Gly D RTO_T_32900 RTO_T_32900 K14225 tRNA-Gly; tRNA Gly D RTO_T_32920 RTO_T_32920 K14225 tRNA-Gly; tRNA Gly D RTO_T_32800 RTO_T_32800 K14225 tRNA-Gly; tRNA Gly D RTO_T_32810 RTO_T_32810 K14225 tRNA-Gly; tRNA Gly D RTO_T_32690 RTO_T_32690 K14226 tRNA-His; tRNA His D RTO_T_32770 RTO_T_32770 K14228 tRNA-Leu; tRNA Leu D RTO_T_32580 RTO_T_32580 K14228 tRNA-Leu; tRNA Leu D RTO_T_32650 RTO_T_32650 K14228 tRNA-Leu; tRNA Leu D RTO_T_32720 RTO_T_32720 K14228 tRNA-Leu; tRNA Leu D RTO_T_32710 RTO_T_32710 K14229 tRNA-Lys; tRNA Lys D RTO_T_32880 RTO_T_32880 K14229 tRNA-Lys; tRNA Lys D RTO_T_32890 RTO_T_32890 K14229 tRNA-Lys; tRNA Lys D RTO_T_32860 RTO_T_32860 K14230 tRNA-Met; tRNA Met D RTO_T_32630 RTO_T_32630 K14230 tRNA-Met; tRNA Met D RTO_T_32870 RTO_T_32870 K14231 tRNA-Phe; tRNA Phe D RTO_T_32660 RTO_T_32660 K14232 tRNA-Pro; tRNA Pro D RTO_T_32790 RTO_T_32790 K14232 tRNA-Pro; tRNA Pro D RTO_T_32740 RTO_T_32740 K14233 tRNA-Ser; tRNA Ser D RTO_T_32750 RTO_T_32750 K14233 tRNA-Ser; tRNA Ser D RTO_T_32760 RTO_T_32760 K14233 tRNA-Ser; tRNA Ser D RTO_T_32950 RTO_T_32950 K14233 tRNA-Ser; tRNA Ser D RTO_T_32620 RTO_T_32620 K14234 tRNA-Thr; tRNA Thr D RTO_T_32850 RTO_T_32850 K14234 tRNA-Thr; tRNA Thr D RTO_T_32730 RTO_T_32730 K14234 tRNA-Thr; tRNA Thr D RTO_T_32590 RTO_T_32590 K14234 tRNA-Thr; tRNA Thr D RTO_T_32840 RTO_T_32840 K14236 tRNA-Tyr; tRNA Tyr D RTO_T_32830 RTO_T_32830 K14237 tRNA-Val; tRNA Val D RTO_T_32910 RTO_T_32910 K14238 tRNA-Sec; tRNA Sec D RTO_17240 glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RTO_10200 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RTO_10190 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D RTO_10210 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D RTO_18660 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D RTO_19880 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RTO_15820 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RTO_23940 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RTO_10230 aspartyl-tRNA synthetase, archaeal type K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D RTO_30110 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D RTO_24820 threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RTO_02600 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RTO_18090 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RTO_31850 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RTO_10700 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D RTO_08940 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RTO_26330 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RTO_01610 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RTO_14790 prolyl-tRNA synthetase, family I K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RTO_23930 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RTO_03810 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RTO_03820 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RTO_11080 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RTO_09480 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:rto03060] D RTO_09690 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D RTO_14580 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D RTO_10470 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D RTO_07410 protein translocase subunit secF/protein translocase subunit secD K12257 secDF; SecD/SecF fusion protein D RTO_20040 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D RTO_02510 membrane protein insertase, YidC/Oxa1 family, C-terminal domain K03217 yidC; YidC/Oxa1 family membrane protein insertase D RTO_25610 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RTO_24580 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RTO_17750 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RTO_01680 signal peptidase I, bacterial type K03100 lepB; signal peptidase I [EC:3.4.21.89] D RTO_15200 signal peptidase I . Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89] D RTO_30040 signal peptidase I, bacterial type K03100 lepB; signal peptidase I [EC:3.4.21.89] D RTO_24640 signal peptidase I, bacterial type K03100 lepB; signal peptidase I [EC:3.4.21.89] D RTO_24660 signal peptidase I, bacterial type K03100 lepB; signal peptidase I [EC:3.4.21.89] D RTO_21340 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:rto04122] D RTO_15520 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RTO_17400 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RTO_09980 Predicted redox protein, regulator of disulfide bond formation K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D RTO_17420 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D RTO_15470 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D RTO_15450 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D RTO_27410 Molybdopterin biosynthesis enzymes K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D RTO_15530 thiazole biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RTO_25270 sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein D RTO_25280 thiamine biosynthesis protein ThiF, family 2 K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] C 03050 Proteasome C 03018 RNA degradation [PATH:rto03018] D RTO_20810 Ribonucleases G and E K08300 rne; ribonuclease E [EC:3.1.26.12] D RTO_26870 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RTO_19580 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D RTO_26910 ATP-dependent DNA helicase, RecQ-like K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RTO_17850 transcription termination factor Rho K03628 rho; transcription termination factor Rho D RTO_23100 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RTO_15240 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D RTO_15700 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RTO_24790 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D RTO_26960 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] B B 09124 Replication and repair C 03030 DNA replication [PATH:rto03030] D RTO_03410 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RTO_01860 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RTO_23110 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RTO_02200 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RTO_23610 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RTO_26490 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RTO_02460 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RTO_00440 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D RTO_18850 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RTO_00400 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RTO_01880 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RTO_28820 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D RTO_18280 Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RTO_27420 Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RTO_24670 Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RTO_17600 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RTO_05460 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:rto03410] D RTO_05720 Predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RTO_22340 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D RTO_09530 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D RTO_15800 apurinic endonuclease (APN1) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RTO_17600 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RTO_07400 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RTO_05460 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:rto03420] D RTO_17120 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D RTO_16430 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D RTO_16420 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D RTO_25350 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D RTO_16020 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RTO_17250 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RTO_21760 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RTO_31420 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RTO_17600 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RTO_05460 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RTO_18020 Rad3-related DNA helicases K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03430 Mismatch repair [PATH:rto03430] D RTO_21550 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D RTO_00500 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D RTO_21540 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D RTO_16020 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RTO_17250 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RTO_21760 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RTO_31420 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RTO_19700 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D RTO_19710 Exonuclease VII small subunit. K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D RTO_07400 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RTO_00400 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RTO_01880 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RTO_28820 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D RTO_23110 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RTO_02460 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RTO_02200 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RTO_26490 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RTO_23610 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RTO_03410 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RTO_01860 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RTO_05460 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:rto03440] D RTO_07400 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RTO_00400 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RTO_01880 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RTO_28820 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D RTO_02440 recF protein K03629 recF; DNA replication and repair protein RecF D RTO_02180 recombination protein RecR K06187 recR; recombination protein RecR D RTO_17330 protein RecA K03553 recA; recombination protein RecA D RTO_17600 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RTO_20330 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA D RTO_20340 Holliday junction DNA helicase, RuvB subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RTO_20470 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RTO_28580 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RTO_23110 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RTO_02460 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RTO_02200 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RTO_26490 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RTO_23610 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RTO_03410 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RTO_01860 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:rto02010] D RTO_24320 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D RTO_24330 molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D RTO_24340 ABC-type spermidine/putrescine transport systems, ATPase components K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D RTO_19980 Spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D RTO_20000 spermidine/putrescine ABC transporter ATP-binding subunit K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D RTO_05560 carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-) K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RTO_23570 carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-) K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RTO_25200 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D RTO_25210 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D RTO_25220 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D RTO_22450 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K17318 lplA; putative aldouronate transport system substrate-binding protein D RTO_03560 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein K07335 bmpA; basic membrane protein A and related proteins D RTO_10500 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10439 rbsB; ribose transport system substrate-binding protein D RTO_17280 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10439 rbsB; ribose transport system substrate-binding protein D RTO_00470 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10439 rbsB; ribose transport system substrate-binding protein D RTO_10510 monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) K10440 rbsC; ribose transport system permease protein D RTO_10520 monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D RTO_31280 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D RTO_31260 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D RTO_31270 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D RTO_31250 carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-) K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D RTO_22690 phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1) K02040 pstS; phosphate transport system substrate-binding protein D RTO_22700 phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1) K02037 pstC; phosphate transport system permease protein D RTO_22710 phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1) K02038 pstA; phosphate transport system permease protein D RTO_22720 phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D RTO_09560 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D RTO_09550 amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-) K17077 artQ; arginine/lysine/histidine transport system permease protein D RTO_15130 amino acid/amide ABC transporter membrane protein 1, HAAT family (TC 3.A.1.4.-) K01997 livH; branched-chain amino acid transport system permease protein D RTO_15150 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family (TC 3.A.1.4.-) K01995 livG; branched-chain amino acid transport system ATP-binding protein D RTO_15160 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-) K01996 livF; branched-chain amino acid transport system ATP-binding protein D RTO_10140 ABC-type metal ion transport system, periplasmic component/surface antigen K02073 metQ; D-methionine transport system substrate-binding protein D RTO_10150 ABC-type metal ion transport system, permease component K02072 metI; D-methionine transport system permease protein D RTO_10160 ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein D RTO_24030 ABC-type metal ion transport system, periplasmic component/surface adhesin K09815 znuA; zinc transport system substrate-binding protein D RTO_24050 ABC-type Mn2+/Zn2+ transport systems, permease components K09816 znuB; zinc transport system permease protein D RTO_24040 ABC-type Mn/Zn transport systems, ATPase component K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D RTO_22490 Uncharacterized conserved protein K03523 bioY; biotin transport system substrate-specific component D RTO_28650 ABC-type cobalt transport system, permease component CbiQ and related transporters K16785 ecfT; energy-coupling factor transport system permease protein D RTO_11120 ABC-type cobalt transport system, permease component CbiQ and related transporters K16785 ecfT; energy-coupling factor transport system permease protein D RTO_11640 ABC-type cobalt transport system, permease component CbiQ and related transporters K16785 ecfT; energy-coupling factor transport system permease protein D RTO_11140 ABC-type cobalt transport system, ATPase component K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RTO_11130 ABC-type cobalt transport system, ATPase component K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RTO_11810 hypothetical protein K19310 bcrB; bacitracin transport system permease protein D RTO_11830 ABC-type multidrug transport system, ATPase component K19309 bcrA; bacitracin transport system ATP-binding protein D RTO_31520 hypothetical protein K20491 nisE; lantibiotic transport system permease protein D RTO_31530 hypothetical protein K20492 nisG; lantibiotic transport system permease protein D RTO_31510 ABC-type multidrug transport system, ATPase component K20490 nisF; lantibiotic transport system ATP-binding protein D RTO_07610 ABC-type antimicrobial peptide transport system, permease component K19084 braE; bacitracin transport system permease protein D RTO_07620 ABC-type antimicrobial peptide transport system, ATPase component K19083 braD; bacitracin transport system ATP-binding protein D RTO_10260 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D RTO_10270 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D RTO_11660 ABC-type multidrug transport system, ATPase and permease components K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D RTO_28690 ABC-type multidrug transport system, ATPase and permease components K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D RTO_11670 ABC-type multidrug transport system, ATPase and permease components K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D RTO_28700 ABC-type multidrug transport system, ATPase and permease components K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D RTO_25800 ABC-type multidrug transport system, ATPase and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D RTO_22840 ABC-type multidrug transport system, ATPase and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D RTO_06590 ABC-type multidrug transport system, ATPase and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D RTO_06580 ABC-type multidrug transport system, ATPase and permease components K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D RTO_25810 ABC-type multidrug transport system, ATPase and permease components K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D RTO_22850 ABC-type multidrug transport system, ATPase and permease components K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump C 02060 Phosphotransferase system (PTS) [PATH:rto02060] D RTO_17990 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D RTO_16510 Phosphotransferase System HPr (HPr) Family K02784 ptsH; phosphocarrier protein HPr D RTO_27400 Phosphotransferase System HPr (HPr) Family K02784 ptsH; phosphocarrier protein HPr D RTO_15540 PTS HPr component phosphorylation site. K02784 ptsH; phosphocarrier protein HPr D RTO_31920 PTS HPr component phosphorylation site. K02784 ptsH; phosphocarrier protein HPr D RTO_07670 PTS system IIA component, Glc family (TC 4.A.1)/PTS system IIB component, Glc family (TC 4.A.1)/PTS system IIC component, Glc family (TC 4.A.1) K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D RTO_00250 PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RTO_30100 PTS system IIA component, Glc family (TC 4.A.1) K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RTO_11090 PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2) K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D RTO_13850 PTS system sucrose-specific IIB component, Glc family (TC 4.A.1.2.12)/PTS system sucrose-specific IIC component, Glc family (TC 4.A.1.2.12) K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D RTO_01640 PTS system, glucose subfamily, IIA component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D RTO_23650 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D RTO_27710 PTS system beta-glucoside-specific IIA component, Glc family (TC 4.A.1.2.6)/PTS system beta-glucoside-specific IIB component, Glc family (TC 4.A.1.2.6)/PTS system beta-glucoside-specific IIC component, Glc family (TC 4.A.1.2.6) K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D RTO_30000 Phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D RTO_29980 Phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D RTO_27390 Phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D RTO_29990 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component D RTO_14350 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02795 manY; mannose PTS system EIIC component D RTO_14360 PTS system IID component, Man family (TC 4.A.6) K02796 manZ; mannose PTS system EIID component D RTO_13750 Phosphotransferase system, mannose/fructose-specific component IIA K19506 gfrA; fructoselysine/glucoselysine PTS system EIIA component [EC:2.7.1.-] D RTO_13760 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB K19507 gfrB; fructoselysine/glucoselysine PTS system EIIB component [EC:2.7.1.-] D RTO_14340 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB K19507 gfrB; fructoselysine/glucoselysine PTS system EIIB component [EC:2.7.1.-] D RTO_13770 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K19508 gfrC; fructoselysine/glucoselysine PTS system EIIC component D RTO_13780 PTS system IID component, Man family (TC 4.A.6) K19509 gfrD; fructoselysine/glucoselysine PTS system EIID component D RTO_23250 PTS system, fructose subfamily, IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D RTO_26530 PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4) K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D RTO_23270 PTS system, fructose subfamily, IIA component K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D RTO_26520 fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] C 03070 Bacterial secretion system [PATH:rto03070] D RTO_07410 protein translocase subunit secF/protein translocase subunit secD K12257 secDF; SecD/SecF fusion protein D RTO_14580 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D RTO_10470 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D RTO_09690 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D RTO_20040 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D RTO_02510 membrane protein insertase, YidC/Oxa1 family, C-terminal domain K03217 yidC; YidC/Oxa1 family membrane protein insertase D RTO_25610 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RTO_17750 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RTO_24580 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RTO_00630 Type IV secretory pathway, VirD4 components K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D RTO_02030 Type IV secretory pathway, VirD4 components K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D RTO_21130 Type IV secretory pathway, VirD4 components K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D RTO_30750 Type IV secretory pathway, VirD4 components K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] B B 09132 Signal transduction C 02020 Two-component system [PATH:rto02020] D RTO_22740 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D RTO_11790 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D RTO_22690 phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1) K02040 pstS; phosphate transport system substrate-binding protein D RTO_00510 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D RTO_16840 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D RTO_16100 Osmosensitive K+ channel histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D RTO_16110 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D RTO_22280 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07775 resD; two-component system, OmpR family, response regulator ResD D RTO_02470 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D RTO_07610 ABC-type antimicrobial peptide transport system, permease component K19084 braE; bacitracin transport system permease protein D RTO_07620 ABC-type antimicrobial peptide transport system, ATPase component K19083 braD; bacitracin transport system ATP-binding protein D RTO_07640 histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D RTO_07650 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR D RTO_20890 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. K19077 graS; two-component system, OmpR family, sensor histidine kinase GraS [EC:2.7.13.3] D RTO_22290 Signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D RTO_28150 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D RTO_06150 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D RTO_31550 Signal transduction histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D RTO_31540 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR D RTO_31510 ABC-type multidrug transport system, ATPase component K20490 nisF; lantibiotic transport system ATP-binding protein D RTO_31520 hypothetical protein K20491 nisE; lantibiotic transport system permease protein D RTO_31530 hypothetical protein K20492 nisG; lantibiotic transport system permease protein D RTO_19810 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D RTO_26680 Sporulation initiation factor Spo0A C terminal. K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D RTO_17840 Malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D RTO_12540 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide K07813 agrB; accessory gene regulator B D RTO_02390 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D RTO_02380 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B D RTO_03890 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D RTO_14420 Uncharacterized protein related to glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RTO_29470 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RTO_09160 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_23180 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_14400 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D RTO_03520 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain. K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D RTO_22440 Predicted signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D RTO_22430 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN D RTO_03530 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN D RTO_31910 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN D RTO_22010 Protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D RTO_06620 diguanylate cyclase (GGDEF) domain K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D RTO_16180 FOG: HPt domain K20976 hptB; histidine phosphotransfer protein HptB C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:rto02024] D RTO_14140 LuxS protein involved in autoinducer AI2 synthesis K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D RTO_07760 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D RTO_07750 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D RTO_27430 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D RTO_16110 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D RTO_15130 amino acid/amide ABC transporter membrane protein 1, HAAT family (TC 3.A.1.4.-) K01997 livH; branched-chain amino acid transport system permease protein D RTO_15150 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family (TC 3.A.1.4.-) K01995 livG; branched-chain amino acid transport system ATP-binding protein D RTO_15160 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-) K01996 livF; branched-chain amino acid transport system ATP-binding protein D RTO_30500 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RTO_26430 Uncharacterized protein conserved in bacteria K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D RTO_12540 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide K07813 agrB; accessory gene regulator B D RTO_10100 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RTO_10080 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02033 ABC.PE.P; peptide/nickel transport system permease protein D RTO_10070 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RTO_10090 ATPase components of various ABC-type transport systems, contain duplicated ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein D RTO_02510 membrane protein insertase, YidC/Oxa1 family, C-terminal domain K03217 yidC; YidC/Oxa1 family membrane protein insertase D RTO_07410 protein translocase subunit secF/protein translocase subunit secD K12257 secDF; SecD/SecF fusion protein D RTO_14580 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D RTO_10470 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D RTO_09690 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D RTO_20040 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D RTO_25610 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RTO_17750 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RTO_24580 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RTO_19810 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D RTO_26680 Sporulation initiation factor Spo0A C terminal. K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D RTO_31550 Signal transduction histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D RTO_31540 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR D RTO_31510 ABC-type multidrug transport system, ATPase component K20490 nisF; lantibiotic transport system ATP-binding protein D RTO_31520 hypothetical protein K20491 nisE; lantibiotic transport system permease protein D RTO_31530 hypothetical protein K20492 nisG; lantibiotic transport system permease protein C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis D RTO_10500 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10439 rbsB; ribose transport system substrate-binding protein D RTO_17280 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10439 rbsB; ribose transport system substrate-binding protein D RTO_00470 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10439 rbsB; ribose transport system substrate-binding protein C 02040 Flagellar assembly [PATH:rto02040] D RTO_18860 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D RTO_25580 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D RTO_14400 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D RTO_26870 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D RTO_19850 B12 binding domain./Pterin binding enzyme./Homocysteine S-methyltransferase. K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance D RTO_16410 Predicted transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor C 01502 Vancomycin resistance [PATH:rto01502] D RTO_22290 Signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D RTO_06490 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RTO_21890 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RTO_06500 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D RTO_16980 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RTO_02260 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D RTO_28150 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D RTO_06150 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rto01503] D RTO_14260 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RTO_00510 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D RTO_16840 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D RTO_20890 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. K19077 graS; two-component system, OmpR family, sensor histidine kinase GraS [EC:2.7.13.3] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:rto01000] C 01001 Protein kinases [BR:rto01001] D RTO_10650 PASTA domain./Protein kinase domain. K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RTO_08290 capsular exopolysaccharide family K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D RTO_16100 Osmosensitive K+ channel histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D RTO_20890 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. K19077 graS; two-component system, OmpR family, sensor histidine kinase GraS [EC:2.7.13.3] D RTO_07640 histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D RTO_22290 Signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D RTO_31550 Signal transduction histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D RTO_03520 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain. K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D RTO_22440 Predicted signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D RTO_06620 diguanylate cyclase (GGDEF) domain K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:rto01009] D RTO_23100 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RTO_05530 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG D RTO_10660 Serine/threonine protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:rto01002] D RTO_21340 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D RTO_02330 Type IV leader peptidase family. K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D RTO_19430 GPR endopeptidase K06012 gpr; spore protease [EC:3.4.24.78] D RTO_17030 Sporulation factor SpoIIGA. K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-] D RTO_01530 Cell wall-associated hydrolases (invasion-associated proteins) K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RTO_09590 Uncharacterized protein conserved in bacteria K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RTO_15860 Cell wall-associated hydrolases (invasion-associated proteins) K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RTO_17210 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D RTO_15840 Glutamate synthase domain 2 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D RTO_15290 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RTO_06950 Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RTO_16880 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RTO_25660 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124] D RTO_02070 LPXTG-site transpeptidase (sortase) family protein K07284 srtA; sortase A [EC:3.4.22.70] D RTO_32240 LPXTG-site transpeptidase (sortase) family protein K07284 srtA; sortase A [EC:3.4.22.70] D RTO_30070 sortase, SrtB family K08600 srtB; sortase B [EC:3.4.22.71] D RTO_00370 sortase, SrtB family K08600 srtB; sortase B [EC:3.4.22.71] D RTO_01660 sortase, SrtB family K08600 srtB; sortase B [EC:3.4.22.71] D RTO_30060 sortase, SrtB family K08600 srtB; sortase B [EC:3.4.22.71] D RTO_30810 sortase, SrtB family K08600 srtB; sortase B [EC:3.4.22.71] D RTO_12540 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide K07813 agrB; accessory gene regulator B D RTO_18130 CAAX amino terminal protease family. K07052 K07052; CAAX protease family protein D RTO_15830 Predicted metal-dependent membrane protease K07052 K07052; CAAX protease family protein D RTO_28150 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D RTO_06150 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D RTO_22580 Predicted Zn-dependent peptidases, insulinase-like K06972 PITRM1; presequence protease [EC:3.4.24.-] D RTO_14640 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D RTO_29580 dipeptidase, putative K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D RTO_27870 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D RTO_18930 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D RTO_30250 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D RTO_20180 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D RTO_05850 Leucyl aminopeptidase (aminopeptidase T) K19689 ampS; aminopeptidase [EC:3.4.11.-] D RTO_27840 isoaspartyl dipeptidase IadA K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-] D RTO_19920 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D RTO_24880 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D RTO_26190 RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D RTO_00510 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D RTO_16840 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D RTO_01620 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RTO_21940 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RTO_21990 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RTO_21390 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RTO_25690 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D RTO_18450 Protease subunit of ATP-dependent Clp proteases K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D RTO_18910 ATP-dependent Lon protease, bacterial type K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D RTO_25710 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D RTO_30430 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D RTO_21290 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D RTO_31130 SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D RTO_31480 SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D RTO_28880 Predicted transcriptional regulator K03503 umuD; DNA polymerase V [EC:3.4.21.-] D RTO_01680 signal peptidase I, bacterial type K03100 lepB; signal peptidase I [EC:3.4.21.89] D RTO_15200 signal peptidase I . Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89] D RTO_30040 signal peptidase I, bacterial type K03100 lepB; signal peptidase I [EC:3.4.21.89] D RTO_24640 signal peptidase I, bacterial type K03100 lepB; signal peptidase I [EC:3.4.21.89] D RTO_24660 signal peptidase I, bacterial type K03100 lepB; signal peptidase I [EC:3.4.21.89] D RTO_10240 C-terminal peptidase (prc) K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D RTO_08480 Peptidase E K05995 pepE; dipeptidase E [EC:3.4.13.21] D RTO_19790 stage IV sporulation protein B K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116] D RTO_15620 Collagenase and related proteases K08303 prtC; U32 family peptidase [EC:3.4.-.-] D RTO_20370 Collagenase and related proteases K08303 prtC; U32 family peptidase [EC:3.4.-.-] D RTO_19010 Collagenase and related proteases K08303 prtC; U32 family peptidase [EC:3.4.-.-] C 01003 Glycosyltransferases [BR:rto01003] D RTO_19820 glycogen/starch synthases, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21] D RTO_07290 bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D RTO_08250 bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D RTO_10290 Teichoic acid biosynthesis proteins K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] C 01005 Lipopolysaccharide biosynthesis proteins [BR:rto01005] D RTO_27110 Glycosyltransferase K12996 rgpA; rhamnosyltransferase [EC:2.4.1.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rto01011] D RTO_30290 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RTO_14280 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RTO_14700 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D RTO_16990 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RTO_10730 UDP-N-acetylmuramyl-tripeptide synthetases K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RTO_06490 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RTO_21890 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RTO_23090 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D RTO_16980 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RTO_02260 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D RTO_09570 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RTO_31800 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RTO_16960 Cell division protein FtsI/penicillin-binding protein 2 K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D RTO_20390 Cell division protein FtsI/penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A D RTO_01620 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RTO_21940 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RTO_21990 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RTO_21390 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RTO_28150 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D RTO_06150 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D RTO_01530 Cell wall-associated hydrolases (invasion-associated proteins) K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RTO_09590 Uncharacterized protein conserved in bacteria K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RTO_15860 Cell wall-associated hydrolases (invasion-associated proteins) K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RTO_02070 LPXTG-site transpeptidase (sortase) family protein K07284 srtA; sortase A [EC:3.4.22.70] D RTO_32240 LPXTG-site transpeptidase (sortase) family protein K07284 srtA; sortase A [EC:3.4.22.70] D RTO_30070 sortase, SrtB family K08600 srtB; sortase B [EC:3.4.22.71] D RTO_00370 sortase, SrtB family K08600 srtB; sortase B [EC:3.4.22.71] D RTO_01660 sortase, SrtB family K08600 srtB; sortase B [EC:3.4.22.71] D RTO_30060 sortase, SrtB family K08600 srtB; sortase B [EC:3.4.22.71] D RTO_30810 sortase, SrtB family K08600 srtB; sortase B [EC:3.4.22.71] D RTO_01590 SpoIID/LytB domain K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D RTO_14260 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:rto01004] D RTO_10400 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RTO_10430 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RTO_10380 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RTO_09190 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RTO_09370 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RTO_10390 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RTO_10360 beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RTO_10410 putative enoyl-(acyl-carrier-protein) reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D RTO_12310 amino acid adenylation domain K04784 irp2; yersiniabactin nonribosomal peptide synthetase D RTO_11540 amino acid adenylation domain K04784 irp2; yersiniabactin nonribosomal peptide synthetase D RTO_07190 acetyl-CoA synthetase (ADP-forming) alpha subunit/branched-chain acyl-CoA synthetase (ADP-forming) alpha subunit K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D RTO_30500 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RTO_17710 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D RTO_27350 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D RTO_00790 1-acyl-sn-glycerol-3-phosphate acyltransferases K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RTO_14150 1-acyl-sn-glycerol-3-phosphate acyltransferases K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:rto01008] D RTO_12310 amino acid adenylation domain K04784 irp2; yersiniabactin nonribosomal peptide synthetase D RTO_11540 amino acid adenylation domain K04784 irp2; yersiniabactin nonribosomal peptide synthetase D RTO_12300 Peptide arylation enzymes K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-] D RTO_11530 Peptide arylation enzymes K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-] D RTO_12320 amino acid adenylation domain K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69] D RTO_11580 amino acid adenylation domain K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69] D RTO_11600 thiazolinyl imide reductase K12241 pchG; pyochelin biosynthesis protein PchG D RTO_12330 thiazolinyl imide reductase K12241 pchG; pyochelin biosynthesis protein PchG C 01006 Prenyltransferases [BR:rto01006] D RTO_19720 Geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RTO_26160 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RTO_21530 tRNA isopentenyltransferase (miaA) K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] C 01007 Amino acid related enzymes [BR:rto01007] D RTO_17240 glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RTO_18660 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D RTO_11080 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RTO_09480 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RTO_18090 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RTO_31850 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RTO_01610 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RTO_08940 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RTO_26330 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RTO_23940 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RTO_30110 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D RTO_10230 aspartyl-tRNA synthetase, archaeal type K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D RTO_23930 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RTO_02600 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RTO_14790 prolyl-tRNA synthetase, family I K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RTO_24820 threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RTO_19880 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RTO_15820 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RTO_03810 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RTO_03820 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RTO_17910 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D RTO_18920 Aspartate/tyrosine/aromatic aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RTO_17920 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RTO_04560 7-keto-8-aminopelargonate synthetase and related enzymes K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D RTO_16260 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D RTO_31720 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D RTO_14080 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D RTO_26420 acetylornithine and succinylornithine aminotransferases K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D RTO_04550 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D RTO_20080 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:rto00194] D RTO_06180 ATP synthase F1 subcomplex epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D RTO_06190 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D RTO_06200 ATP synthase, F1 gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D RTO_06220 ATP synthase, F1 delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D RTO_06240 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D RTO_06250 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:rto03000] D RTO_14860 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RTO_32080 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RTO_20750 AraC-type DNA-binding domain-containing proteins K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D RTO_26540 Transcriptional regulators of sugar metabolism K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D RTO_31890 Stage III sporulation protein D. K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D RTO_08830 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RTO_10550 Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RTO_27600 Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RTO_23220 Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RTO_01650 transcriptional regulator, LacI family K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D RTO_06890 transcriptional regulator, LacI family K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D RTO_32300 Transcriptional regulators K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D RTO_25990 Transcriptional regulators K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor D RTO_13730 Transcriptional regulators K03710 K03710; GntR family transcriptional regulator D RTO_07010 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D RTO_11020 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D RTO_03510 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D RTO_18670 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D RTO_08470 Transcriptional regulators K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RTO_15590 Fe2+/Zn2+ uptake regulation proteins K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RTO_28170 Fe2+/Zn2+ uptake regulation proteins K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RTO_01550 Fe2+/Zn2+ uptake regulation proteins K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D RTO_09280 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D RTO_31730 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D RTO_28280 Predicted transcriptional regulators K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D RTO_05430 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D RTO_12360 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D RTO_28220 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D RTO_11180 Predicted transcriptional regulators K10947 K10947; PadR family transcriptional regulator D RTO_06910 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator D RTO_28710 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D RTO_26710 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D RTO_11680 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D RTO_16410 Predicted transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D RTO_30410 birA, biotin-[acetyl-CoA-carboxylase] ligase region K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D RTO_17550 Predicted transcriptional regulators K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D RTO_05570 hypothetical protein K02647 cdaR; carbohydrate diacid regulator D RTO_10280 transcriptional regulator, CdaR family K02647 cdaR; carbohydrate diacid regulator D RTO_06460 Sugar diacid utilization regulator K02647 cdaR; carbohydrate diacid regulator D RTO_15670 Pleiotropic transcriptional repressor K03706 codY; transcriptional pleiotropic repressor D RTO_27730 Predicted transcriptional regulator K07726 K07726; putative transcriptional regulator D RTO_05050 Predicted transcriptional regulator K07727 K07727; putative transcriptional regulator D RTO_31410 hypothetical protein K07727 K07727; putative transcriptional regulator D RTO_32070 Predicted transcriptional regulator K07727 K07727; putative transcriptional regulator D RTO_30860 Predicted transcriptional regulator K07727 K07727; putative transcriptional regulator D RTO_28870 Predicted transcriptional regulators K07729 K07729; putative transcriptional regulator D RTO_04820 Predicted transcriptional regulators K07729 K07729; putative transcriptional regulator D RTO_11100 transcriptional antiterminator, BglG family K03488 licT; beta-glucoside operon transcriptional antiterminator D RTO_07660 transcriptional antiterminator, BglG family K03480 glcT; transcriptional antiterminator D RTO_22160 Uncharacterized protein conserved in bacteria K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D RTO_03910 Uncharacterized protein conserved in bacteria K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D RTO_32170 Regulator of polyketide synthase expression K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D RTO_07450 transcriptional regulator, AbrB family K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D RTO_01720 ParB-like nuclease domain. K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_03060 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_02580 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_30600 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_06660 Glycerol-3-phosphate responsive antiterminator (mRNA-binding) K02443 glpP; glycerol uptake operon antiterminator D RTO_19770 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism D RTO_15220 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D RTO_29410 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D RTO_16930 mraZ protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:rto03021] D RTO_18020 Rad3-related DNA helicases K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RTO_14650 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RTO_14660 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RTO_27530 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D RTO_18860 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D RTO_25580 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D RTO_12830 Sigma-70, region 4. K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RTO_05170 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RTO_04570 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RTO_25850 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RTO_11870 hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RTO_08870 RNA polymerase sigma-F factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D RTO_17040 RNA polymerase, sigma 29 subunit, SigE K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D RTO_17060 RNA polymerase, sigma subunit, RpsG/SigG K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D RTO_18120 RNA polymerase, sigma 30 subunit, SigH K27000 sigH; RNA polymerase sigma-H factor D RTO_14400 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D RTO_19480 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D RTO_19690 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D RTO_14590 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG D RTO_17490 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D RTO_30540 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D RTO_17850 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:rto03019] D RTO_20810 Ribonucleases G and E K08300 rne; ribonuclease E [EC:3.1.26.12] D RTO_17730 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RTO_00520 uncharacterized domain HDIG K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-] D RTO_26910 ATP-dependent DNA helicase, RecQ-like K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RTO_26870 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RTO_19580 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D RTO_17850 transcription termination factor Rho K03628 rho; transcription termination factor Rho D RTO_23100 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RTO_15240 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D RTO_15700 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RTO_24790 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D RTO_26960 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D RTO_14290 Predicted P-loop-containing kinase K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:rto03011] D RTO_26820 Ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D RTO_16220 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D RTO_09830 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D RTO_09640 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D RTO_09720 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D RTO_00390 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6 D RTO_09750 Ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D RTO_09900 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D RTO_09650 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D RTO_14810 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D RTO_09660 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D RTO_09760 Ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D RTO_19560 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D RTO_24590 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D RTO_00410 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18 D RTO_09850 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D RTO_19890 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21 D RTO_14610 ribosomal protein L1, bacterial/chloroplast K02863 RP-L1; large subunit ribosomal protein L1 D RTO_09860 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D RTO_09890 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D RTO_09880 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D RTO_09740 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D RTO_00430 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9 D RTO_14600 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D RTO_14630 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12 D RTO_05370 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D RTO_09790 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D RTO_09700 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D RTO_09820 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16 D RTO_09620 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17 D RTO_09730 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D RTO_24630 ribosomal protein L19, bacterial type K02884 RP-L19; large subunit ribosomal protein L19 D RTO_18830 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D RTO_21190 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D RTO_09840 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D RTO_09870 Ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D RTO_09780 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D RTO_21210 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27 D RTO_20440 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28 D RTO_09710 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D RTO_17860 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D RTO_17700 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D RTO_02480 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34 D RTO_18820 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35 D RTO_00120 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25 D RTO_R_32970 16S; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RTO_R_32960 23S; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:rto03009] D RTO_17730 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RTO_22590 GTP-binding protein Era K03595 era; GTPase D RTO_21220 Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D RTO_19480 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D RTO_19690 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D RTO_14590 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG D RTO_22900 pseudouridine synthase family K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D RTO_20550 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D RTO_15000 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D RTO_10680 ribosomal RNA small subunit methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D RTO_15510 RNA methyltransferase, RsmE family K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D RTO_16940 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D RTO_29880 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D RTO_23580 conserved hypothetical protein TIGR00096 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D RTO_19750 hemolysin TlyA family protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D RTO_18110 rRNA methylase, putative, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D RTO_21750 conserved hypothetical protein TIGR00246 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D RTO_10170 Predicted SAM-dependent methyltransferases K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D RTO_10670 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D RTO_00530 23S rRNA m(5)U-1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D RTO_16040 23S rRNA m(5)U-1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D RTO_20590 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D RTO_14740 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D RTO_22390 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D RTO_21330 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D RTO_24610 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D RTO_27540 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D RTO_15500 [LSU ribosomal protein L11P]-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D RTO_20810 Ribonucleases G and E K08300 rne; ribonuclease E [EC:3.1.26.12] D RTO_15570 conserved hypothetical protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D RTO_18100 Uncharacterized protein conserved in bacteria K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] D RTO_10640 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RTO_27340 ribosome-associated GTPase EngA K03977 engA; GTPase D RTO_24650 ribosome biogenesis GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A D RTO_09390 GTP-binding protein HflX K03665 hflX; GTPase D RTO_00830 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RTO_07380 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D RTO_19520 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D RTO_02450 Uncharacterized conserved protein K14761 rlbA; ribosome-associated protein D RTO_21260 iojap-related protein K09710 ybeB; ribosome-associated protein D RTO_21710 conserved hypothetical protein TIGR00043 K07042 ybeY; probable rRNA maturation factor D RTO_21230 conserved hypothetical protein TIGR00253 K07574 yhbY; RNA-binding protein D RTO_25530 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D RTO_10610 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D RTO_17690 Predicted metal-binding, possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:rto03016] D RTO_29310 RNAse Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D RTO_30130 uncharacterized domain HDIG K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D RTO_04160 Uncharacterized conserved protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D RTO_17240 glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RTO_14790 prolyl-tRNA synthetase, family I K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RTO_01610 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RTO_26330 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RTO_31850 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RTO_18660 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D RTO_23940 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RTO_19880 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RTO_15820 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RTO_30110 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D RTO_24820 threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RTO_02600 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RTO_18090 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RTO_08940 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RTO_23930 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RTO_03810 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RTO_03820 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RTO_11080 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RTO_09480 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RTO_18140 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D RTO_02280 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D RTO_22930 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D RTO_11110 pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D RTO_29420 pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D RTO_24480 Pseudouridylate synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D RTO_19540 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D RTO_15520 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RTO_17400 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RTO_00830 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RTO_21530 tRNA isopentenyltransferase (miaA) K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D RTO_02530 tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D RTO_02540 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D RTO_10040 selenium donor protein K01008 selD; selenide, water dikinase [EC:2.7.9.3] D RTO_02490 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D RTO_32980 Bacterial RNase P class A K01978 rnpB; M1 RNA D RTO_10230 aspartyl-tRNA synthetase, archaeal type K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D RTO_20820 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D RTO_14440 Uncharacterized conserved protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D RTO_06120 Cytosine/adenosine deaminases K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D RTO_30520 tRNA-U20-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D RTO_21660 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D RTO_15550 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D RTO_24620 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D RTO_18870 Predicted SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D RTO_06070 Predicted rRNA methylase (SpoU class) K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D RTO_23590 Predicted O-methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D RTO_30380 rRNA methylase, putative, group 3 K03437 spoU; RNA methyltransferase, TrmH family D RTO_17420 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D RTO_15280 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D RTO_14560 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D RTO_09980 Predicted redox protein, regulator of disulfide bond formation K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D RTO_27670 preQ(0) biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D RTO_27650 preQ(0) biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D RTO_27660 Organic radical activating enzymes K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D RTO_27680 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D RTO_03740 Uncharacterized protein conserved in bacteria K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6] D RTO_20030 tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D RTO_15530 thiazole biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RTO_30210 tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D RTO_29320 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D RTO_29280 conserved hypothetical nucleotide-binding protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D RTO_17660 Predicted nucleotidyltransferase K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-] D RTO_19580 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:rto03012] D RTO_19510 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2 D RTO_18810 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3 D RTO_21920 ATPase components of ABC transporters with duplicated ATPase domains K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D RTO_16230 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D RTO_14840 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D RTO_04740 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D RTO_10020 selenocysteine-specific elongation factor SelB K03833 selB; selenocysteine-specific elongation factor D RTO_17890 bacterial peptide chain release factor 1 (bRF-1) K02835 prfA; peptide chain release factor 1 D RTO_26150 ribosome recycling factor K02838 frr; ribosome recycling factor D RTO_17880 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D RTO_17110 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D RTO_09670 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D RTO_15740 translation elongation factor P (EF-P) K02356 efp; elongation factor P D RTO_25630 bacterial peptide chain release factor 2 (bRF-2) K02836 prfB; peptide chain release factor 2 D RTO_19670 bacterial peptide chain release factor 3 (bRF-3) K02837 prfC; peptide chain release factor 3 C 03110 Chaperones and folding catalysts [BR:rto03110] D RTO_10760 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D RTO_22770 ATPases with chaperone activity, ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D RTO_03840 endopeptidase Clp ATP-binding regulatory subunit (clpX) K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D RTO_25700 endopeptidase Clp ATP-binding regulatory subunit (clpX) K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D RTO_05530 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG D RTO_15240 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D RTO_15700 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RTO_10180 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ D RTO_14540 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ D RTO_15250 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D RTO_22510 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ D RTO_24140 Disulfide bond chaperones of the HSP33 family K04083 hslO; molecular chaperone Hsp33 D RTO_00300 Molecular chaperone (small heat shock protein) K13993 HSP20; HSP20 family protein D RTO_15690 Co-chaperonin GroES (HSP10) K04078 groES; chaperonin GroES D RTO_00510 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D RTO_16840 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D RTO_19920 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D RTO_24880 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D RTO_06250 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D RTO_06610 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D RTO_26690 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D RTO_26700 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D RTO_05540 Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D RTO_17130 PPIC-type PPIASE domain. K07533 prsA; foldase protein PrsA [EC:5.2.1.8] D RTO_05800 thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:rto04131] D RTO_17440 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RTO_17540 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RTO_05530 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system C 03051 Proteasome [BR:rto03051] D RTO_05530 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:rto03032] D RTO_18280 Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RTO_27420 Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RTO_14860 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RTO_32080 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RTO_30150 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RTO_02470 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D RTO_00440 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D RTO_05080 phage DNA replication protein (predicted replicative helicase loader) K02315 dnaC; DNA replication protein DnaC D RTO_11260 phage DNA replication protein (predicted replicative helicase loader) K02315 dnaC; DNA replication protein DnaC D RTO_12990 phage DNA replication protein (predicted replicative helicase loader) K02315 dnaC; DNA replication protein DnaC D RTO_14680 replicative DNA helicase loader DnaI K02315 dnaC; DNA replication protein DnaC D RTO_28460 phage DNA replication protein (predicted replicative helicase loader) K02315 dnaC; DNA replication protein DnaC D RTO_11950 phage DNA replication protein (predicted replicative helicase loader) K02315 dnaC; DNA replication protein DnaC D RTO_18850 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RTO_00400 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RTO_01880 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RTO_28820 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D RTO_23110 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RTO_02460 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RTO_26490 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RTO_23610 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RTO_03410 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RTO_01860 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RTO_02200 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RTO_24670 Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RTO_17600 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RTO_05460 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RTO_02420 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RTO_19460 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RTO_02430 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RTO_19450 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RTO_15660 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D RTO_00720 DNA topoisomerase III, bacteria and conjugative plasmid K03169 topB; DNA topoisomerase III [EC:5.6.2.1] D RTO_26980 Topoisomerase IA K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:rto03036] D RTO_14860 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RTO_32080 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RTO_17730 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RTO_30150 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RTO_02470 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D RTO_17740 condensin subunit Smc K03529 smc; chromosome segregation protein D RTO_21950 segregation and condensation protein B K06024 scpB; segregation and condensation protein B D RTO_10270 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D RTO_21830 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D RTO_16950 hypothetical protein K03586 ftsL; cell division protein FtsL D RTO_17010 hypothetical protein K03589 ftsQ; cell division protein FtsQ D RTO_16890 Bacterial cell division membrane protein K03588 ftsW; cell division protein FtsW D RTO_10260 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D RTO_20350 cell division protein ZapA K09888 zapA; cell division protein ZapA D RTO_14260 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RTO_21440 Septum formation inhibitor K03610 minC; septum site-determining protein MinC D RTO_21430 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D RTO_21420 Septum formation topological specificity factor MinE. K03608 minE; cell division topological specificity factor D RTO_21360 Uncharacterized protein conserved in bacteria K09772 sepF; cell division inhibitor SepF D RTO_16440 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D RTO_21480 Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins D RTO_21470 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D RTO_21460 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D RTO_06900 Bacterial cell division membrane protein K05837 rodA; rod shape determining protein RodA D RTO_01730 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein D RTO_03050 CobQ/CobB/MinD/ParA nucleotide binding domain. K03496 parA; chromosome partitioning protein D RTO_02570 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein D RTO_05350 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein D RTO_09360 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein D RTO_28780 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein D RTO_28490 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein D RTO_01720 ParB-like nuclease domain. K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_03060 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_02580 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_30600 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_02540 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D RTO_23690 Site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD D RTO_32160 Site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD D RTO_25720 ribosome biogenesis GTP-binding protein YsxC/EngB K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:rto03400] D RTO_22340 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D RTO_09530 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D RTO_05720 Predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RTO_18020 Rad3-related DNA helicases K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RTO_32280 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RTO_18650 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RTO_18780 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RTO_15800 apurinic endonuclease (APN1) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RTO_07400 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RTO_05460 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RTO_17600 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RTO_16430 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D RTO_16420 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D RTO_25350 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D RTO_16020 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RTO_17250 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RTO_21760 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RTO_31420 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RTO_14650 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RTO_14660 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RTO_27530 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D RTO_17120 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D RTO_21550 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D RTO_00500 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D RTO_21540 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D RTO_19700 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D RTO_19710 Exonuclease VII small subunit. K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D RTO_23110 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RTO_02460 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RTO_26490 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RTO_23610 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RTO_03410 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RTO_01860 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RTO_02200 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RTO_00400 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RTO_01880 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RTO_28820 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D RTO_14850 T/G mismatch-specific endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] D RTO_17330 protein RecA K03553 recA; recombination protein RecA D RTO_20330 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA D RTO_20340 Holliday junction DNA helicase, RuvB subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RTO_14470 ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50 D RTO_14460 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RTO_22790 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D RTO_02440 recF protein K03629 recF; DNA replication and repair protein RecF D RTO_20470 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RTO_28580 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RTO_02180 recombination protein RecR K06187 recR; recombination protein RecR D RTO_19780 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D RTO_20600 Penicillin-binding protein-related factor A, putative recombinase K03700 recU; recombination protein U D RTO_05780 recombination helicase AddA, Firmicutes type K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D RTO_05790 ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D RTO_02420 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RTO_19460 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RTO_02430 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RTO_19450 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RTO_15660 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D RTO_30150 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RTO_26910 ATP-dependent DNA helicase, RecQ-like K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RTO_10750 Nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D RTO_30950 Nucleotidyltransferase/DNA polymerase involved in DNA repair K03502 umuC; DNA polymerase V D RTO_29380 Nucleotidyltransferase/DNA polymerase involved in DNA repair K03502 umuC; DNA polymerase V D RTO_28880 Predicted transcriptional regulator K03503 umuD; DNA polymerase V [EC:3.4.21.-] D RTO_21290 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D RTO_31130 SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D RTO_31480 SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D RTO_19530 Exopolyphosphatase-related proteins K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:rto03029] D RTO_19510 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2 D RTO_18810 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3 D RTO_16230 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D RTO_14840 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D RTO_04740 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D RTO_22590 GTP-binding protein Era K03595 era; GTPase D RTO_11080 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RTO_26330 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RTO_23940 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RTO_10200 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RTO_10190 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D RTO_10210 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D RTO_00400 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RTO_01880 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RTO_28820 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D RTO_15240 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D RTO_15700 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RTO_15690 Co-chaperonin GroES (HSP10) K04078 groES; chaperonin GroES D RTO_10180 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ D RTO_14540 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ D RTO_15250 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D RTO_22510 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ D RTO_15520 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RTO_17400 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RTO_02510 membrane protein insertase, YidC/Oxa1 family, C-terminal domain K03217 yidC; YidC/Oxa1 family membrane protein insertase D RTO_05530 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:rto02000] D RTO_11660 ABC-type multidrug transport system, ATPase and permease components K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D RTO_28690 ABC-type multidrug transport system, ATPase and permease components K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D RTO_11670 ABC-type multidrug transport system, ATPase and permease components K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D RTO_28700 ABC-type multidrug transport system, ATPase and permease components K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D RTO_25800 ABC-type multidrug transport system, ATPase and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D RTO_22840 ABC-type multidrug transport system, ATPase and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D RTO_06590 ABC-type multidrug transport system, ATPase and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D RTO_06580 ABC-type multidrug transport system, ATPase and permease components K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D RTO_25810 ABC-type multidrug transport system, ATPase and permease components K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D RTO_22850 ABC-type multidrug transport system, ATPase and permease components K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D RTO_24830 ABC-type multidrug transport system, ATPase and permease components K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RTO_24320 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D RTO_24330 molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D RTO_24340 ABC-type spermidine/putrescine transport systems, ATPase components K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D RTO_19980 Spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D RTO_20000 spermidine/putrescine ABC transporter ATP-binding subunit K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D RTO_24370 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D RTO_03720 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D RTO_03730 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D RTO_05560 carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-) K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RTO_23570 carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-) K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RTO_32340 ABC-type sugar transport system, periplasmic component K25086 musE; maltose transport system substrate-binding protein D RTO_03260 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K25086 musE; maltose transport system substrate-binding protein D RTO_22400 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K25086 musE; maltose transport system substrate-binding protein D RTO_22410 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K25087 musF; maltose transport system permease protein D RTO_03280 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K25087 musF; maltose transport system permease protein D RTO_32310 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K25087 musF; maltose transport system permease protein D RTO_03290 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K25088 musG; maltose transport system permease protein D RTO_22420 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K25088 musG; maltose transport system permease protein D RTO_32320 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K25088 musG; maltose transport system permease protein D RTO_25200 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D RTO_25210 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D RTO_25220 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D RTO_22450 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K17318 lplA; putative aldouronate transport system substrate-binding protein D RTO_10500 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10439 rbsB; ribose transport system substrate-binding protein D RTO_17280 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10439 rbsB; ribose transport system substrate-binding protein D RTO_00470 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10439 rbsB; ribose transport system substrate-binding protein D RTO_10510 monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) K10440 rbsC; ribose transport system permease protein D RTO_10520 monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D RTO_06860 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K25670 fusA; fructooligosaccharide transport system substrate-binding protein D RTO_06880 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K25671 fusC; fructooligosaccharide transport system permease protein D RTO_06870 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K25672 fusB; fructooligosaccharide transport system permease protein D RTO_31280 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D RTO_31260 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D RTO_31270 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D RTO_31250 carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-) K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D RTO_03560 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein K07335 bmpA; basic membrane protein A and related proteins D RTO_22690 phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1) K02040 pstS; phosphate transport system substrate-binding protein D RTO_22700 phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1) K02037 pstC; phosphate transport system permease protein D RTO_22710 phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1) K02038 pstA; phosphate transport system permease protein D RTO_22720 phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D RTO_09560 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D RTO_09550 amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-) K17077 artQ; arginine/lysine/histidine transport system permease protein D RTO_15130 amino acid/amide ABC transporter membrane protein 1, HAAT family (TC 3.A.1.4.-) K01997 livH; branched-chain amino acid transport system permease protein D RTO_15150 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family (TC 3.A.1.4.-) K01995 livG; branched-chain amino acid transport system ATP-binding protein D RTO_15160 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-) K01996 livF; branched-chain amino acid transport system ATP-binding protein D RTO_10140 ABC-type metal ion transport system, periplasmic component/surface antigen K02073 metQ; D-methionine transport system substrate-binding protein D RTO_10150 ABC-type metal ion transport system, permease component K02072 metI; D-methionine transport system permease protein D RTO_10160 ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein D RTO_23960 ABC-type uncharacterized transport system, periplasmic component K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D RTO_27320 ABC-type uncharacterized transport system, periplasmic component K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D RTO_23970 ABC-type uncharacterized transport system, permease component K05832 K05832; putative tryptophan/tyrosine transport system permease protein D RTO_27310 ABC-type uncharacterized transport system, permease component K05832 K05832; putative tryptophan/tyrosine transport system permease protein D RTO_23980 ABC-type uncharacterized transport system, ATPase component K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D RTO_27300 ABC-type uncharacterized transport system, ATPase component K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D RTO_17180 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RTO_02660 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RTO_17190 amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-) K02029 ABC.PA.P; polar amino acid transport system permease protein D RTO_17200 amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D RTO_10100 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RTO_10080 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02033 ABC.PE.P; peptide/nickel transport system permease protein D RTO_10070 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RTO_10090 ATPase components of various ABC-type transport systems, contain duplicated ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein D RTO_29900 ABC-type Fe3+-hydroxamate transport system, periplasmic component K25034 btuF; cobalamin transport system substrate-binding protein D RTO_29910 ABC-type Fe3+-siderophore transport system, permease component K25027 btuC; cobalamin transport system permease protein D RTO_29920 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D RTO_24030 ABC-type metal ion transport system, periplasmic component/surface adhesin K09815 znuA; zinc transport system substrate-binding protein D RTO_24050 ABC-type Mn2+/Zn2+ transport systems, permease components K09816 znuB; zinc transport system permease protein D RTO_24040 ABC-type Mn/Zn transport systems, ATPase component K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D RTO_22490 Uncharacterized conserved protein K03523 bioY; biotin transport system substrate-specific component D RTO_11630 conserved hypothetical integral membrane protein TIGR02185 K16926 htsT; energy-coupling factor transport system substrate-specific component D RTO_28640 conserved hypothetical integral membrane protein TIGR02185 K16926 htsT; energy-coupling factor transport system substrate-specific component D RTO_28650 ABC-type cobalt transport system, permease component CbiQ and related transporters K16785 ecfT; energy-coupling factor transport system permease protein D RTO_11120 ABC-type cobalt transport system, permease component CbiQ and related transporters K16785 ecfT; energy-coupling factor transport system permease protein D RTO_11640 ABC-type cobalt transport system, permease component CbiQ and related transporters K16785 ecfT; energy-coupling factor transport system permease protein D RTO_11140 ABC-type cobalt transport system, ATPase component K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RTO_11130 ABC-type cobalt transport system, ATPase component K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RTO_11650 ATPase components of various ABC-type transport systems, contain duplicated ATPase K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RTO_28660 ATPase components of various ABC-type transport systems, contain duplicated ATPase K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RTO_31520 hypothetical protein K20491 nisE; lantibiotic transport system permease protein D RTO_31530 hypothetical protein K20492 nisG; lantibiotic transport system permease protein D RTO_31510 ABC-type multidrug transport system, ATPase component K20490 nisF; lantibiotic transport system ATP-binding protein D RTO_14500 hypothetical protein K25151 gldF; gliding motility-associated transport system permease protein D RTO_11810 hypothetical protein K19310 bcrB; bacitracin transport system permease protein D RTO_11830 ABC-type multidrug transport system, ATPase component K19309 bcrA; bacitracin transport system ATP-binding protein D RTO_07610 ABC-type antimicrobial peptide transport system, permease component K19084 braE; bacitracin transport system permease protein D RTO_07620 ABC-type antimicrobial peptide transport system, ATPase component K19083 braD; bacitracin transport system ATP-binding protein D RTO_18970 ABC-type antimicrobial peptide transport system, permease component K24948 yknZ; antimicrobial peptide resistance transport system permease protein D RTO_10260 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D RTO_10270 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D RTO_12820 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RTO_14960 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RTO_22380 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RTO_22370 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RTO_12810 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RTO_22810 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RTO_07990 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RTO_14950 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RTO_21560 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RTO_28980 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RTO_31070 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RTO_13250 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RTO_28130 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RTO_13400 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D RTO_08710 Predicted permease. K02004 ABC.CD.P; putative ABC transport system permease protein D RTO_12880 ABC-type antimicrobial peptide transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D RTO_12900 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D RTO_16200 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RTO_26660 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D RTO_22150 Predicted permease. K02004 ABC.CD.P; putative ABC transport system permease protein D RTO_28320 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D RTO_20910 Predicted permease. K02004 ABC.CD.P; putative ABC transport system permease protein D RTO_05240 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RTO_13390 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RTO_08720 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RTO_12870 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RTO_12890 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RTO_26670 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RTO_29840 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RTO_22140 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RTO_28330 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RTO_20920 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RTO_12440 ABC-type transport system involved in Fe-S cluster assembly, ATPase component K09013 sufC; Fe-S cluster assembly ATP-binding protein D RTO_29590 sodium/proton antiporter, CPA1 family (TC 2.A.36) K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2 D RTO_09220 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D RTO_15060 putative efflux protein, MATE family K26939 norM; MATE family, multidrug efflux pump D RTO_25480 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_24450 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_14920 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_26640 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_15410 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_24350 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_00230 Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump D RTO_00130 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_12460 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_13450 Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump D RTO_29670 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_14020 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_07090 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_10780 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_00270 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_26630 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_15880 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_14930 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_04110 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D RTO_25410 Sugar phosphate permease K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D RTO_17990 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D RTO_16510 Phosphotransferase System HPr (HPr) Family K02784 ptsH; phosphocarrier protein HPr D RTO_27400 Phosphotransferase System HPr (HPr) Family K02784 ptsH; phosphocarrier protein HPr D RTO_15540 PTS HPr component phosphorylation site. K02784 ptsH; phosphocarrier protein HPr D RTO_31920 PTS HPr component phosphorylation site. K02784 ptsH; phosphocarrier protein HPr D RTO_00250 PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RTO_30100 PTS system IIA component, Glc family (TC 4.A.1) K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RTO_07670 PTS system IIA component, Glc family (TC 4.A.1)/PTS system IIB component, Glc family (TC 4.A.1)/PTS system IIC component, Glc family (TC 4.A.1) K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D RTO_11090 PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2) K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D RTO_13850 PTS system sucrose-specific IIB component, Glc family (TC 4.A.1.2.12)/PTS system sucrose-specific IIC component, Glc family (TC 4.A.1.2.12) K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D RTO_01640 PTS system, glucose subfamily, IIA component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D RTO_23650 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D RTO_27710 PTS system beta-glucoside-specific IIA component, Glc family (TC 4.A.1.2.6)/PTS system beta-glucoside-specific IIB component, Glc family (TC 4.A.1.2.6)/PTS system beta-glucoside-specific IIC component, Glc family (TC 4.A.1.2.6) K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D RTO_23270 PTS system, fructose subfamily, IIA component K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202] D RTO_23250 PTS system, fructose subfamily, IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D RTO_26530 PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4) K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D RTO_30000 Phosphotransferase system cellobiose-specific component IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D RTO_29980 Phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D RTO_27390 Phosphotransferase system cellobiose-specific component IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D RTO_29990 PTS system, lactose/cellobiose family IIC component K02761 celB; cellobiose PTS system EIIC component D RTO_14350 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K02795 manY; mannose PTS system EIIC component D RTO_14360 PTS system IID component, Man family (TC 4.A.6) K02796 manZ; mannose PTS system EIID component D RTO_13750 Phosphotransferase system, mannose/fructose-specific component IIA K19506 gfrA; fructoselysine/glucoselysine PTS system EIIA component [EC:2.7.1.-] D RTO_13760 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB K19507 gfrB; fructoselysine/glucoselysine PTS system EIIB component [EC:2.7.1.-] D RTO_14340 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB K19507 gfrB; fructoselysine/glucoselysine PTS system EIIB component [EC:2.7.1.-] D RTO_13770 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC K19508 gfrC; fructoselysine/glucoselysine PTS system EIIC component D RTO_13780 PTS system IID component, Man family (TC 4.A.6) K19509 gfrD; fructoselysine/glucoselysine PTS system EIID component D RTO_18170 Ion channel. K10716 kch; voltage-gated potassium channel D RTO_10790 Ion channel. K10716 kch; voltage-gated potassium channel D RTO_03900 ammonium transporter K03320 amt; ammonium transporter, Amt family D RTO_07570 ammonium transporter K03320 amt; ammonium transporter, Amt family D RTO_13710 Formate/nitrite family of transporters K21993 fdhC; formate transporter D RTO_24700 Small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel D RTO_24090 Mg2+ transporter (mgtE) K06213 mgtE; magnesium transporter D RTO_24800 Mg2+ and Co2+ transporters K03284 corA; magnesium transporter D RTO_14270 Hemolysins and related proteins containing CBS domains K03699 tlyC; magnesium and cobalt exporter, CNNM family D RTO_26120 Putative effector of murein hydrolase LrgA K06518 cidA; holin-like protein D RTO_02760 sugar (Glycoside-Pentoside-Hexuronide) transporter K11104 melB; melibiose permease D RTO_25160 sugar (Glycoside-Pentoside-Hexuronide) transporter K16248 gutA; probable glucitol transport protein GutA D RTO_29760 Predicted divalent heavy-metal cations transporter K07238 TC.ZIP; zinc transporter, ZIP family D RTO_13510 Predicted membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D RTO_26430 Uncharacterized protein conserved in bacteria K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D RTO_06350 gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family D RTO_07060 K+-dependent Na+/Ca+ exchanger related-protein K07301 yrbG; cation:H+ antiporter D RTO_00310 SSS sodium solute transporter superfamily K11928 putP; sodium/proline symporter D RTO_16150 transporter, NhaC family (TC 2.A.35) K18218 tet35; tetracycline resistance efflux pump D RTO_03850 sodium/proton-potassium antiporter GerN, CPA2 family (TC 2.A.37.2.2) K26730 napA; Na+:H+ antiporter D RTO_04760 Trk-type K+ transport systems, membrane components K03498 trkH; trk/ktr system potassium uptake protein D RTO_16070 Trk-type K+ transport systems, membrane components K03498 trkH; trk/ktr system potassium uptake protein D RTO_30360 Trk-type K+ transport systems, membrane components K03498 trkH; trk/ktr system potassium uptake protein D RTO_04750 K+ transport systems, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein D RTO_16080 K+ transport systems, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein D RTO_30370 K+ transport systems, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein D RTO_02900 Purine-cytosine permease and related proteins K10974 codB; cytosine permease D RTO_04710 Permeases K06901 pbuG; adenine/guanine/hypoxanthine permease D RTO_25500 Chloride channel protein EriC K03281 clcA; chloride channel protein, CIC family D RTO_29860 Chromate transport protein ChrA K07240 chrA; chromate transporter D RTO_29870 Chromate transport protein ChrA K07240 chrA; chromate transporter D RTO_14230 Sulfate permease and related transporters (MFS superfamily) K03321 TC.SULP; sulfate permease, SulP family D RTO_07470 Na+/phosphate symporter K03324 yjbB; phosphate:Na+ symporter D RTO_30120 Na/Pi-cotransporter K03324 yjbB; phosphate:Na+ symporter D RTO_28290 arsenical-resistance protein K03325 ACR3; arsenite transporter D RTO_17380 Membrane protein involved in the export of O-antigen and teichoic acid K06409 spoVB; stage V sporulation protein B D RTO_21700 Membrane protein involved in the export of O-antigen and teichoic acid K06409 spoVB; stage V sporulation protein B D RTO_26620 Predicted permeases K24180 mleP; malate permease and related proteins D RTO_16210 Predicted permeases K24180 mleP; malate permease and related proteins D RTO_32420 Putative threonine efflux protein K11249 eamB; cysteine/O-acetylserine efflux protein D RTO_08420 Predicted branched-chain amino acid permease (azaleucine resistance) K26605 azlC; branched chain amino acid efflux pump D RTO_29510 Predicted branched-chain amino acid permease (azaleucine resistance) K26605 azlC; branched chain amino acid efflux pump D RTO_29500 Branched-chain amino acid transport protein (AzlD). K26606 azlD; branched chain amino acid efflux pump D RTO_08430 Predicted branched-chain amino acid permeases (azaleucine resistance) K26606 azlD; branched chain amino acid efflux pump D RTO_22530 Predicted membrane protein K23675 fmnP; riboflavin transporter D RTO_16890 Bacterial cell division membrane protein K03588 ftsW; cell division protein FtsW D RTO_07070 Predicted membrane protein K23242 mntP; manganese efflux pump family protein D RTO_15990 hypothetical protein K03646 tolA; colicin import membrane protein D RTO_07560 vacuolar-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D RTO_20160 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D RTO_20170 Pyruvate/oxaloacetate carboxyltransferase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D RTO_20130 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3] D RTO_20150 Biotin carboxyl carrier protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D RTO_18950 RND family efflux transporter, MFP subunit K24950 yknX; membrane fusion protein, antimicrobial resistance system D RTO_08290 capsular exopolysaccharide family K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D RTO_08300 Capsular polysaccharide biosynthesis protein K19420 epsA; protein tyrosine kinase modulator D RTO_12470 Fe2+ transport system protein A K04758 feoA; ferrous iron transport protein A D RTO_26720 Fe2+ transport system protein A K04758 feoA; ferrous iron transport protein A D RTO_26730 Fe2+ transport system protein A K04758 feoA; ferrous iron transport protein A D RTO_07080 ferrous iron transporter FeoB K04759 feoB; ferrous iron transport protein B D RTO_12480 ferrous iron transporter FeoB K04759 feoB; ferrous iron transport protein B D RTO_26740 ferrous iron transporter FeoB K04759 feoB; ferrous iron transport protein B C 02044 Secretion system [BR:rto02044] D RTO_02330 Type IV leader peptidase family. K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D RTO_02390 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D RTO_02380 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B D RTO_26440 competence protein ComEA helix-hairpin-helix repeat region K02237 comEA; competence protein ComEA D RTO_00820 Deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D RTO_26480 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D RTO_00630 Type IV secretory pathway, VirD4 components K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D RTO_02030 Type IV secretory pathway, VirD4 components K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D RTO_21130 Type IV secretory pathway, VirD4 components K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D RTO_30750 Type IV secretory pathway, VirD4 components K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D RTO_25610 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RTO_07410 protein translocase subunit secF/protein translocase subunit secD K12257 secDF; SecD/SecF fusion protein D RTO_14580 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D RTO_10470 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D RTO_09690 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D RTO_24580 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RTO_17750 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RTO_20040 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D RTO_02510 membrane protein insertase, YidC/Oxa1 family, C-terminal domain K03217 yidC; YidC/Oxa1 family membrane protein insertase C 02042 Bacterial toxins [BR:rto02042] D RTO_14270 Hemolysins and related proteins containing CBS domains K03699 tlyC; magnesium and cobalt exporter, CNNM family D RTO_06540 channel protein, hemolysin III family K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:rto02022] D RTO_22740 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D RTO_11790 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D RTO_16100 Osmosensitive K+ channel histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D RTO_16110 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D RTO_22280 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07775 resD; two-component system, OmpR family, response regulator ResD D RTO_07640 histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D RTO_07650 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR D RTO_20890 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. K19077 graS; two-component system, OmpR family, sensor histidine kinase GraS [EC:2.7.13.3] D RTO_22290 Signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D RTO_31550 Signal transduction histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D RTO_31540 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR D RTO_12850 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 K02483; two-component system, OmpR family, response regulator D RTO_19810 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D RTO_26680 Sporulation initiation factor Spo0A C terminal. K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D RTO_03520 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain. K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D RTO_22440 Predicted signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D RTO_22430 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN D RTO_03530 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN D RTO_31910 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN D RTO_06620 diguanylate cyclase (GGDEF) domain K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D RTO_16180 FOG: HPt domain K20976 hptB; histidine phosphotransfer protein HptB D RTO_29480 Response regulator with putative antiterminator output domain K22010 pdtaR; two-component system, response regulator PdtaR C 02035 Bacterial motility proteins [BR:rto02035] D RTO_08400 hypothetical protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D RTO_07050 hypothetical protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D RTO_02330 Type IV leader peptidase family. K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D RTO_02390 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins [BR:rto03037] D RTO_29590 sodium/proton antiporter, CPA1 family (TC 2.A.36) K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2 C 04812 Cytoskeleton proteins [BR:rto04812] D RTO_16440 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D RTO_21480 Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins D RTO_21440 Septum formation inhibitor K03610 minC; septum site-determining protein MinC D RTO_21430 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D RTO_21420 Septum formation topological specificity factor MinE. K03608 minE; cell division topological specificity factor D RTO_01730 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein D RTO_03050 CobQ/CobB/MinD/ParA nucleotide binding domain. K03496 parA; chromosome partitioning protein D RTO_02570 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein D RTO_05350 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein D RTO_09360 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein D RTO_28780 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein D RTO_28490 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein D RTO_01720 ParB-like nuclease domain. K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_03060 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_02580 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_30600 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:rto04147] D RTO_05530 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG D RTO_26870 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RTO_17440 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RTO_17450 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RTO_17540 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RTO_15700 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RTO_15240 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D RTO_18990 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RTO_15710 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D RTO_14840 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D RTO_02280 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D RTO_28190 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D RTO_30500 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RTO_09160 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_23180 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RTO_09680 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D RTO_03750 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D RTO_26370 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RTO_03550 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D RTO_17780 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D RTO_31880 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D RTO_11150 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D RTO_14420 Uncharacterized protein related to glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RTO_29470 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RTO_20090 Phosphoglycerate dehydrogenase and related dehydrogenases K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RTO_29270 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D RTO_08790 Aldo/keto reductases, related to diketogulonate reductase K00002 AKR1A1; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D RTO_17460 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:rto02048] D RTO_30930 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D RTO_30880 Restriction endonuclease S subunits K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D RTO_30870 Type I restriction-modification system methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D RTO_31440 DNA modification methylase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D RTO_14860 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RTO_32080 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RTO_31450 Type III restriction enzyme, res subunit. K01156 res; type III restriction enzyme [EC:3.1.21.5] D RTO_18410 HNH endonuclease. K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D RTO_32090 hypothetical protein K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D RTO_06650 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes K07448 mrr; restriction system protein D RTO_30940 Restriction endonuclease K07448 mrr; restriction system protein D RTO_19190 Growth inhibitor K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D RTO_31180 Growth inhibitor K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D RTO_12930 Growth inhibitor K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D RTO_19200 Growth regulator K07172 mazE; antitoxin MazE D RTO_12180 addiction module toxin, RelE/StbE family K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-] D RTO_11910 addiction module toxin, RelE/StbE family K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-] D RTO_02950 addiction module antitoxin, RelB/DinJ family K07473 dinJ; DNA-damage-inducible protein J D RTO_11920 addiction module antitoxin, RelB/DinJ family K07473 dinJ; DNA-damage-inducible protein J D RTO_12170 addiction module antitoxin, RelB/DinJ family K07473 dinJ; DNA-damage-inducible protein J D RTO_16440 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D RTO_21480 Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins D RTO_17240 glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RTO_15520 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RTO_17400 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:rto01504] D RTO_16150 transporter, NhaC family (TC 2.A.35) K18218 tet35; tetracycline resistance efflux pump D RTO_05950 small GTP-binding protein domain K18220 tetM; ribosomal protection tetracycline resistance protein D RTO_16410 Predicted transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D RTO_22290 Signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D RTO_28150 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D RTO_06150 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D RTO_20890 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. K19077 graS; two-component system, OmpR family, sensor histidine kinase GraS [EC:2.7.13.3] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:rto03100] D RTO_T_32940 RTO_T_32940 K14218 tRNA-Ala; tRNA Ala D RTO_T_32540 RTO_T_32540 K14219 tRNA-Arg; tRNA Arg D RTO_T_32680 RTO_T_32680 K14219 tRNA-Arg; tRNA Arg D RTO_T_32570 RTO_T_32570 K14219 tRNA-Arg; tRNA Arg D RTO_T_32930 RTO_T_32930 K14219 tRNA-Arg; tRNA Arg D RTO_T_32490 RTO_T_32490 K14220 tRNA-Asn; tRNA Asn D RTO_T_32600 RTO_T_32600 K14220 tRNA-Asn; tRNA Asn D RTO_T_32640 RTO_T_32640 K14221 tRNA-Asp; tRNA Asp D RTO_T_32820 RTO_T_32820 K14221 tRNA-Asp; tRNA Asp D RTO_T_32510 RTO_T_32510 K14222 tRNA-Cys; tRNA Cys D RTO_T_32550 RTO_T_32550 K14222 tRNA-Cys; tRNA Cys D RTO_T_32700 RTO_T_32700 K14223 tRNA-Gln; tRNA Gln D RTO_T_32780 RTO_T_32780 K14223 tRNA-Gln; tRNA Gln D RTO_T_32500 RTO_T_32500 K14224 tRNA-Glu; tRNA Glu D RTO_T_32610 RTO_T_32610 K14224 tRNA-Glu; tRNA Glu D RTO_T_32560 RTO_T_32560 K14224 tRNA-Glu; tRNA Glu D RTO_T_32670 RTO_T_32670 K14225 tRNA-Gly; tRNA Gly D RTO_T_32900 RTO_T_32900 K14225 tRNA-Gly; tRNA Gly D RTO_T_32920 RTO_T_32920 K14225 tRNA-Gly; tRNA Gly D RTO_T_32800 RTO_T_32800 K14225 tRNA-Gly; tRNA Gly D RTO_T_32810 RTO_T_32810 K14225 tRNA-Gly; tRNA Gly D RTO_T_32690 RTO_T_32690 K14226 tRNA-His; tRNA His D RTO_T_32770 RTO_T_32770 K14228 tRNA-Leu; tRNA Leu D RTO_T_32580 RTO_T_32580 K14228 tRNA-Leu; tRNA Leu D RTO_T_32650 RTO_T_32650 K14228 tRNA-Leu; tRNA Leu D RTO_T_32720 RTO_T_32720 K14228 tRNA-Leu; tRNA Leu D RTO_T_32710 RTO_T_32710 K14229 tRNA-Lys; tRNA Lys D RTO_T_32880 RTO_T_32880 K14229 tRNA-Lys; tRNA Lys D RTO_T_32890 RTO_T_32890 K14229 tRNA-Lys; tRNA Lys D RTO_T_32860 RTO_T_32860 K14230 tRNA-Met; tRNA Met D RTO_T_32630 RTO_T_32630 K14230 tRNA-Met; tRNA Met D RTO_T_32870 RTO_T_32870 K14231 tRNA-Phe; tRNA Phe D RTO_T_32660 RTO_T_32660 K14232 tRNA-Pro; tRNA Pro D RTO_T_32790 RTO_T_32790 K14232 tRNA-Pro; tRNA Pro D RTO_T_32740 RTO_T_32740 K14233 tRNA-Ser; tRNA Ser D RTO_T_32750 RTO_T_32750 K14233 tRNA-Ser; tRNA Ser D RTO_T_32760 RTO_T_32760 K14233 tRNA-Ser; tRNA Ser D RTO_T_32950 RTO_T_32950 K14233 tRNA-Ser; tRNA Ser D RTO_T_32620 RTO_T_32620 K14234 tRNA-Thr; tRNA Thr D RTO_T_32850 RTO_T_32850 K14234 tRNA-Thr; tRNA Thr D RTO_T_32730 RTO_T_32730 K14234 tRNA-Thr; tRNA Thr D RTO_T_32590 RTO_T_32590 K14234 tRNA-Thr; tRNA Thr D RTO_T_32840 RTO_T_32840 K14236 tRNA-Tyr; tRNA Tyr D RTO_T_32830 RTO_T_32830 K14237 tRNA-Val; tRNA Val D RTO_T_32910 RTO_T_32910 K14238 tRNA-Sec; tRNA Sec D RTO_R_32970 16S; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RTO_R_32960 23S; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RTO_32980 Bacterial RNase P class A K01978 rnpB; M1 RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D RTO_13060 Aldo/keto reductases, related to diketogulonate reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D RTO_14130 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D RTO_03150 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-] D RTO_23290 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-] D RTO_08580 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D RTO_10930 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D RTO_09230 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs K07469 mop; aldehyde oxidoreductase [EC:1.2.99.7] D RTO_08360 carboxynorspermidine dehydrogenase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55] D RTO_15320 hydrogenases, Fe-only K18332 hndD; NADP-reducing hydrogenase subunit HndD [EC:1.12.1.3] D RTO_21780 sulfide dehydrogenase (flavoprotein) subunit SudB K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D RTO_28300 Protein-tyrosine-phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D RTO_26320 anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D RTO_09110 glycyl-radical enzyme activating protein family K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D RTO_22230 Predicted N6-adenine-specific DNA methylase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D RTO_12220 Acetyltransferase (isoleucine patch superfamily) K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D RTO_32370 Acetyltransferase (isoleucine patch superfamily) K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D RTO_02870 Acetyltransferase (GNAT) family. K03826 yiaC; putative acetyltransferase [EC:2.3.1.-] D RTO_25330 NCAIR mutase (PurE)-related proteins K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D RTO_10600 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D RTO_07840 Membrane-associated lipoprotein involved in thiamine biosynthesis K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D RTO_20300 Membrane-associated lipoprotein involved in thiamine biosynthesis K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D RTO_22480 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D RTO_16490 conserved hypothetical protein TIGR00159 K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D RTO_08880 anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1] D RTO_25370 Hpr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D RTO_30200 Stage II sporulation protein E (SpoIIE). K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16] D RTO_08310 Capsular polysaccharide biosynthesis protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D RTO_15730 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 K07015 yqeG; putative phosphatase [EC:3.1.3.-] D RTO_27960 Uncharacterized conserved protein K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-] D RTO_00420 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59] D RTO_14990 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D RTO_13830 Glycosidases K01215 dexB; glucan 1,6-alpha-glucosidase [EC:3.2.1.70] D RTO_14380 Protein of unknown function (DUF2961). K27494 exoMA1; D-arabinan exo alpha-(1,3)/(1,5)-arabinofuranosidase (non-reducing end) [EC:3.2.1.225] D RTO_15720 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RTO_10710 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D RTO_29350 N-formylmethionyl-tRNA deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D RTO_17800 Predicted xylanase/chitin deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D RTO_26930 Predicted xylanase/chitin deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D RTO_05630 endoribonuclease L-PSP, putative K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D RTO_06640 Myosin-crossreactive antigen K10254 ohyA; oleate hydratase [EC:4.2.1.53] D RTO_21900 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D RTO_24230 diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15] D RTO_25320 conserved hypothetical protein TIGR00268 K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D RTO_25340 conserved hypothetical protein TIGR00299 K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D RTO_10490 Fucose dissimilation pathway protein FucU K02431 fucU; L-fucose mutarotase [EC:5.1.3.29] D RTO_22540 CoA-substrate-specific enzyme activase, putative K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9] D RTO_10340 acetyl-CoA carboxylase carboxyltransferase subunit alpha K04104 accD3; acyl-CoA carboxylase subunit beta [EC:6.4.1.-] D RTO_20240 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D RTO_15970 4Fe-4S binding domain. K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D RTO_20290 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D RTO_22170 copper-(or silver)-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D RTO_19910 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D RTO_05410 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D RTO_28230 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D RTO_19930 ATPase, P-type (transporting), HAD superfamily, subfamily IC K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-] C 99981 Carbohydrate metabolism D RTO_14310 Phosphotransferase System HPr (HPr) Family K11184 chr; catabolite repression HPr-like protein D RTO_13740 Predicted phosphosugar isomerases K19510 gfrF; fructoselysine-6-phosphate deglycase C 99982 Energy metabolism D RTO_20260 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D RTO_20270 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D RTO_17410 FeS cluster assembly scaffold protein NifU, Clostridium type K04488 iscU; nitrogen fixation protein NifU and related proteins D RTO_03620 Nitrogenase molybdenum-iron protein, alpha and beta chains K02587 nifE; nitrogenase molybdenum-cofactor synthesis protein NifE C 99983 Lipid metabolism D RTO_17650 EDD domain protein, DegV family K25232 fakB; fatty acid kinase fatty acid binding subunit D RTO_06920 EDD domain protein, DegV family K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism D RTO_08440 hypothetical protein K15051 endA; DNA-entry nuclease C 99985 Amino acid metabolism D RTO_13800 Ethanolamine utilization protein K04023 eutH; ethanolamine transporter D RTO_25770 Ethanolamine utilization protein K04029 eutP; ethanolamine utilization protein EutP D RTO_25750 Ethanolamine utilization protein K04031 eutS; ethanolamine utilization protein EutS D RTO_25760 Ethanolamine utilization protein K04031 eutS; ethanolamine utilization protein EutS D RTO_19310 Lactoylglutathione lyase and related lyases K08234 yaeR; glyoxylase I family protein D RTO_21370 pyridoxal phosphate enzyme, YggS family K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D RTO_22610 conserved hypothetical protein K07027 K07027; glycosyltransferase 2 family protein D RTO_08780 Cell Wall Hydrolase. K01449 cwlJ; cell wall hydrolase C 99987 Cofactor metabolism D RTO_07850 Predicted unusual protein kinase K03688 ubiB; ubiquinone biosynthesis protein D RTO_09000 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC K27271 pduS; cobalamin reductase C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D RTO_17980 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D RTO_22460 Transcriptional accessory protein K06959 tex; protein Tex C 99974 Translation D RTO_17050 Predicted exonuclease of the beta-lactamase fold involved in RNA processing K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D RTO_23040 trigger factor K03545 tig; trigger factor D RTO_25680 trigger factor K03545 tig; trigger factor D RTO_10450 SsrA-binding protein K03664 smpB; SsrA-binding protein D RTO_03640 hydrogenase assembly chaperone HypC/HupF K04653 hypC; hydrogenase expression/formation protein HypC D RTO_03650 Hydrogenase maturation factor K04654 hypD; hydrogenase expression/formation protein HypD D RTO_03660 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D RTO_06080 Hydrogenase maturation factor K04655 hypE; hydrogenase expression/formation protein HypE D RTO_03630 [NiFe] hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF D RTO_15640 Mg chelatase-related protein K07391 comM; magnesium chelatase family protein D RTO_24180 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family K07402 xdhC; xanthine dehydrogenase accessory factor D RTO_24290 selenium-dependent molybdenum hydroxylase system protein, YqeB family K07402 xdhC; xanthine dehydrogenase accessory factor D RTO_01500 Negative regulator of genetic competence, sporulation and motility K16511 mecA1_2; adapter protein MecA 1/2 C 99976 Replication and repair D RTO_21490 DNA replication and repair protein RadC K03630 radC; DNA repair protein RadC D RTO_24680 conserved hypothetical protein TIGR00252 K07460 yraN; putative endonuclease D RTO_15650 DNA protecting protein DprA K04096 smf; DNA processing protein D RTO_01160 Phage terminase, small subunit K07474 xtmA; phage terminase small subunit D RTO_01150 phage terminase, large subunit, PBSX family K06909 xtmB; phage terminase large subunit D RTO_17810 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 ycaJ; putative ATPase D RTO_01230 phage/plasmid primase, P4 family, C-terminal domain K06919 K06919; putative DNA primase/helicase D RTO_01700 Transposase and inactivated derivatives, IS30 family K07482 K07482; transposase, IS30 family D RTO_06570 Transposase. K07483 K07483; transposase D RTO_23750 Transposase and inactivated derivatives K07483 K07483; transposase D RTO_02820 Transposase and inactivated derivatives K07493 K07493; putative transposase D RTO_13660 transposase K07496 K07496; putative transposase D RTO_23760 Transposase and inactivated derivatives K07497 K07497; putative transposase D RTO_28420 Site-specific recombinase XerD K14059 int; integrase D RTO_28770 Site-specific recombinase XerD K14059 int; integrase D RTO_30980 Site-specific recombinase XerD K14059 int; integrase C 99979 Viral proteins C 99998 Others D RTO_02190 conserved hypothetical protein TIGR00103 K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D RTO_06410 sugar (Glycoside-Pentoside-Hexuronide) transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D RTO_24970 Na+/melibiose symporter and related transporters K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D RTO_20770 sugar (Glycoside-Pentoside-Hexuronide) transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D RTO_16270 Gamma-aminobutyrate permease and related permeases K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D RTO_14100 Amino acid transporters K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D RTO_16820 Choline-glycine betaine transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family D RTO_24460 Na+/proline symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D RTO_23830 Na+/proline symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D RTO_03320 Na+-dependent transporters of the SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D RTO_03600 Na+-dependent transporters of the SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D RTO_29930 Na+-dependent transporters of the SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D RTO_02730 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D RTO_10120 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D RTO_23070 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D RTO_26290 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D RTO_02630 Predicted Na+-dependent transporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family D RTO_25490 Predicted Na+-dependent transporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family D RTO_03540 Cytosine/uracil/thiamine/allantoin permeases K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family C 99978 Cell growth D RTO_16860 hypothetical protein K06333 cotJB; spore coat protein JB D RTO_16870 Mn-containing catalase K06334 cotJC; spore coat protein JC D RTO_02520 Predicted RNA-binding protein K06346 jag; spoIIIJ-associated protein D RTO_08890 anti-anti-sigma factor K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist) D RTO_19440 Stage II sporulation protein P (SpoIIP). K06385 spoIIP; stage II sporulation protein P D RTO_14200 stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R D RTO_19590 stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA D RTO_19610 stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC D RTO_19630 Stage III sporulation protein AE (spore_III_AE). K06394 spoIIIAE; stage III sporulation protein AE D RTO_19660 hypothetical protein K06397 spoIIIAH; stage III sporulation protein AH D RTO_27370 stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A D RTO_13170 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase D RTO_04890 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase D RTO_05060 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase D RTO_13320 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase D RTO_12950 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase D RTO_11290 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase D RTO_11740 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase D RTO_29090 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase D RTO_29100 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase D RTO_08850 Stage V sporulation protein AA. K06403 spoVAA; stage V sporulation protein AA D RTO_08860 hypothetical protein K06404 spoVAB; stage V sporulation protein AB D RTO_08340 SpoVA protein. K06405 spoVAC; stage V sporulation protein AC D RTO_08330 Stage V sporulation protein AD (SpoVAD). K06406 spoVAD; stage V sporulation protein AD D RTO_08320 stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE D RTO_18790 Bacillus/Clostridium GerA spore germination protein. K06408 spoVAF; stage V sporulation protein AF D RTO_14730 Uncharacterized protein, involved in the regulation of septum location K06412 spoVG; stage V sporulation protein G D RTO_20480 Small, acid-soluble spore proteins, alpha/beta type. K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP) D RTO_26470 Spore germination protein K06298 gerM; germination protein M C 99993 Cell motility C 99995 Signaling proteins D RTO_24440 Carbon starvation protein, predicted membrane protein K06200 cstA; carbon starvation protein D RTO_25540 GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein D RTO_17630 ACT domain-containing protein K07166 K07166; ACT domain-containing protein D RTO_21720 Phosphate starvation-inducible protein PhoH, predicted ATPase K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D RTO_24770 Predicted ATPase related to phosphate starvation-inducible protein PhoH K07175 phoH2; PhoH-like ATPase C 99992 Structural proteins D RTO_15490 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) K07273 acm; lysozyme D RTO_18630 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) K07273 acm; lysozyme D RTO_09380 Ethanolamine utilization protein K27263 pduB; bacterial microcompartment shell protein D RTO_08990 Carbon dioxide concentrating mechanism/carboxysome shell protein K27272 pduT; bacterial microcompartment shell protein C 99994 Others D RTO_22730 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein D RTO_00340 Uncharacterized protein involved in copper resistance K06201 cutC; copper homeostasis protein D RTO_12800 Protein of unknown function (DUF1648). K26996 sdpI; immunity protein, SdpI family D RTO_31610 hypothetical protein K26996 sdpI; immunity protein, SdpI family D RTO_08500 hypothetical protein K26996 sdpI; immunity protein, SdpI family D RTO_02720 Predicted transcriptional regulators K26996 sdpI; immunity protein, SdpI family D RTO_12790 hypothetical protein K26996 sdpI; immunity protein, SdpI family B B 09194 Poorly characterized C 99996 General function prediction only D RTO_09130 Histidinol phosphatase and related hydrolases of the PHP family K04477 ycdX; putative hydrolase D RTO_31230 EMAP domain K06878 K06878; tRNA-binding protein D RTO_31340 EMAP domain K06878 K06878; tRNA-binding protein D RTO_10440 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED K07025 K07025; putative hydrolase of the HAD superfamily D RTO_11030 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E K07025 K07025; putative hydrolase of the HAD superfamily D RTO_24890 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E K07025 K07025; putative hydrolase of the HAD superfamily D RTO_03800 Predicted membrane protein K07058 K07058; membrane protein D RTO_03580 YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain K01421 yhgE; putative membrane protein D RTO_15050 X-X-X-Leu-X-X-Gly heptad repeats K01421 yhgE; putative membrane protein C 99997 Function unknown D RTO_14000 Beta-propeller domains of methanol dehydrogenase type K06872 K06872; uncharacterized protein D RTO_28040 Hydrolases of the alpha/beta superfamily K06889 K06889; uncharacterized protein D RTO_27480 Predicted ATPase (AAA+ superfamily) K06923 K06923; uncharacterized protein D RTO_26900 Uncharacterised protein family (UPF0153). K06940 K06940; uncharacterized protein D RTO_24600 RNA-binding protein (KH domain) K06960 K06960; uncharacterized protein D RTO_10690 Predicted Zn-dependent protease K06973 K06973; uncharacterized protein D RTO_15040 Predicted exporters of the RND superfamily K07003 K07003; uncharacterized protein D RTO_31760 Predicted exporters of the RND superfamily K07003 K07003; uncharacterized protein D RTO_09450 Predicted membrane protein, putative toxin regulator K07035 K07035; uncharacterized protein D RTO_04200 Predicted nucleotidyltransferase K07074 K07074; uncharacterized protein D RTO_11050 Predicted permeases K07090 K07090; uncharacterized protein D RTO_22250 phosphoesterase, MJ0936 family K07095 K07095; uncharacterized protein D RTO_23550 phosphoesterase, MJ0936 family K07095 K07095; uncharacterized protein D RTO_05380 Predicted phosphohydrolases K07098 K07098; uncharacterized protein D RTO_21970 Predicted phosphohydrolases K07098 K07098; uncharacterized protein D RTO_13600 Predicted small molecule binding protein (contains 3H domain) K07105 K07105; uncharacterized protein D RTO_09990 YeeE/YedE family (DUF395). K07112 K07112; uncharacterized protein D RTO_20570 Short-chain dehydrogenases of various substrate specificities K07124 K07124; uncharacterized protein D RTO_13890 Predicted ATPase (AAA+ superfamily) K07133 K07133; uncharacterized protein D RTO_23880 hypothetical protein K07133 K07133; uncharacterized protein D RTO_25740 Uncharacterized FAD-dependent dehydrogenases K07137 K07137; uncharacterized protein D RTO_21500 Uncharacterized FAD-dependent dehydrogenases K07137 K07137; uncharacterized protein D RTO_19350 Uncharacterized Fe-S center protein K07138 K07138; uncharacterized protein D RTO_17830 radical SAM protein, TIGR01212 family K07139 K07139; uncharacterized protein D RTO_02780 Predicted membrane protein K07149 K07149; uncharacterized protein D RTO_02500 conserved hypothetical protein TIGR00278 K08998 K08998; uncharacterized protein D RTO_07590 Uncharacterized conserved protein K09117 K09117; uncharacterized protein D RTO_17640 Uncharacterized conserved protein K09157 K09157; uncharacterized protein D RTO_27930 Uncharacterized conserved protein K09384 K09384; uncharacterized protein D RTO_02890 Uncharacterized conserved protein K09703 K09703; uncharacterized protein D RTO_24570 Uncharacterized protein conserved in bacteria K09787 K09787; uncharacterized protein D RTO_26580 Uncharacterized protein conserved in bacteria K09790 K09790; uncharacterized protein D RTO_23130 Uncharacterized protein conserved in bacteria K00243 K00243; uncharacterized protein D RTO_17900 Uncharacterized conserved protein K01163 K01163; uncharacterized protein D RTO_21200 Predicted ribosomal protein K07584 ysxB; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 11, 2024