+F Repair protein KO #

  DNA Repair and Recombination Proteins - Selenomonas sp. oral taxon 478

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D ADJ74_03270 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E ADJ74_07555 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E ADJ74_05935 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ADJ74_00335 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D ADJ74_10575 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ADJ74_07205 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D ADJ74_03270 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E ADJ74_07555 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E ADJ74_05935 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ADJ74_00450 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E ADJ74_00335 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E ADJ74_01565 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E ADJ74_10245 single-stranded DNA-binding protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E ADJ74_08995 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E ADJ74_06985 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E ADJ74_06980 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E ADJ74_07765 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E ADJ74_08990 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ADJ74_08995 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F ADJ74_03145 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F ADJ74_03140 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F ADJ74_02250 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F ADJ74_07820 RNA polymerase K03048 rpoE; DNA-directed RNA polymerase subunit delta F ADJ74_06415 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F ADJ74_07830 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E ADJ74_02140 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E ADJ74_10010 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E ADJ74_02135 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E ADJ74_10490 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E ADJ74_00095 hypothetical protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E ADJ74_10485 exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E ADJ74_09555 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E ADJ74_06385 DNA polymerase III subunit alpha K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E ADJ74_04230 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E ADJ74_02705 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E ADJ74_06100 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E ADJ74_08275 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ADJ74_05640 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E ADJ74_08995 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E ADJ74_08990 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ADJ74_00670 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E ADJ74_04010 endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E ADJ74_09810 helicase RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E ADJ74_00115 recombinase RecA K03553 recA; recombination protein RecA E ADJ74_09985 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E ADJ74_09980 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ADJ74_09990 crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E ADJ74_10370 DNA replication protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E ADJ74_09005 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E ADJ74_09000 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E ADJ74_00115 recombinase RecA K03553 recA; recombination protein RecA E ADJ74_08185 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E ADJ74_04240 recombinase RecF K03629 recF; DNA replication and repair protein RecF E ADJ74_06805 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E ADJ74_01305 ATPase AAA K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E ADJ74_10245 single-stranded DNA-binding protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E ADJ74_02020 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E ADJ74_05650 recombinase RecR K06187 recR; recombination protein RecR E ADJ74_10460 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E ADJ74_09985 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E ADJ74_09980 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ADJ74_09990 crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E ADJ74_09015 ATP-dependent deoxyribonuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E ADJ74_09010 ATP-dependent deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E ADJ74_09180 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E ADJ74_00545 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E ADJ74_09005 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E ADJ74_09000 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F ADJ74_04345 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F ADJ74_04255 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F ADJ74_08915 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F ADJ74_07840 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F ADJ74_10245 single-stranded DNA-binding protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F ADJ74_02020 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F ADJ74_05650 recombinase RecR K06187 recR; recombination protein RecR F ADJ74_08995 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F ADJ74_03305 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F ADJ74_06985 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F ADJ74_06980 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D ADJ74_08325 type VI secretion protein ImpB K03502 umuC; DNA polymerase V C Other SOS response factors D ADJ74_00115 recombinase RecA K03553 recA; recombination protein RecA D ADJ74_00315 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D ADJ74_10460 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D ADJ74_00670 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D ADJ74_00110 recombinase RecA K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D ADJ74_00415 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D ADJ74_10575 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ADJ74_07205 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D ADJ74_07510 exopolyphosphatase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024